Labeo rohita (rohu): 127173317
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Entry
127173317 CDS
T09007
Symbol
cdh4
Name
(RefSeq) cadherin-4 isoform X1
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
127173317 (cdh4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lroh04515
]
127173317 (cdh4)
Cell adhesion molecules [BR:
lroh04515
]
Cadherins
Major cadherins
127173317 (cdh4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_FAT4_N
Cytomega_TRL10
Orf78
Motif
Other DBs
NCBI-GeneID:
127173317
NCBI-ProteinID:
XP_050979076
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All DBs
Position
11:complement(2665995..2928126)
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AA seq
931 aa
AA seq
DB search
MAKMKTGCAILVACALLVGTSWGSHGNVQAIAPCRPGFSQSFYTVFVPRGVLQGLNIHKD
TLLSSGHVKFETCQQIEEFSFESSDPKFSVRPDGSLYAEQDVTNLTEPIQFMVTARDSAG
RYIWETTVKLALVGHLLSPPINQFAGDGVYGGSSHNHYQNPRLITFPRQHQRGSSNGLRR
QKRDWVIPPINVPENSRGPFPQVLVRIRSDQDKEIEIRYSITGAGADQPPNDVYIIDPVT
GKMSVTKPLDREERASYHLRAHAVDINGNQMEPPIDLYIYVIDMNDNRPEFKNQVYNGSV
AEGSKPGTSVMQVTAFDADDSTTANGLVHYRILSQTPHIPIPNMFTINGATGEISTIATG
IDREKVSQYTIIVQATDMEGSLNFGLSNTATALISITDINDNPPELDSKTFLGEVPENAV
GVVVANLTVRDKDQPHTPNWNAVYRITGGDSMGHFAIRTDEITNDGKVIVVKPVDYERND
AFTLMVVVSNQAHLASGIPSSPSSSAAVSIKVLDVNEAPVFPSNPKIIRFEEGVPADTTL
ATFAALDPDRFIQQTIRYSKLSDPANWLKINRTNGRITTTAVLDRESPYMKKNVYEATFL
AVDNGSPPATGTGTLQIYLIDVNDNVPVLVPQEALVCERSRHGYPVNITASDLDSEPNAG
PYVFELPSYPSSARRNWTISRLNGNYAQLKLRIPYLEAGMYRVPILVSDSGNPPLSNTSV
LKVKVCPCDENGDCTVIGAVTVAGLGTGAIITILICIIILLSMVLFFVVWVKRREKERQT
KPLLIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPESLDHIMSKPAGVRRVDERPVI
LESQYPVRPTVPHPGDIGEFIIDGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLDS
SSSGEQDYDYLNDWGPRFKKLADLYGGGGED
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaatgaaaaccggctgcgcgattcttgtggcgtgtgccttacttgtgggcacc
tcttgggggagtcacggaaacgttcaggccatcgctccatgcagaccaggtttctcccag
agtttctacaccgtatttgtccccaggggtgtgctgcaaggcctgaacattcacaaagat
accctgctgtcatctggccatgtgaagttcgaaacctgtcagcaaatagaggagttttct
tttgagagcagtgacccaaagttcagtgttcggccggatggctctctttacgcagagcaa
gatgtgacgaatctaaccgaacccatccagttcatggtgacggccagagacagcgcgggc
aggtatatctgggagaccactgttaaactggccctcgtcggacacctgctatcacctcct
attaaccagtttgctggggatggtgtttatggcggatcctcccacaaccactatcaaaat
cccaggctcattacgtttccacgacaacaccagcgaggctcgtccaatgggctgcggcga
cagaagcgagactgggtcattccaccaatcaacgtgcctgaaaactccagaggacccttc
cctcaagttctcgtcaggattcgatcggaccaggacaaagagattgagatccggtacagt
ataacaggagccggagcagaccagcctcccaacgacgtctacatcattgatcctgtgaca
gggaaaatgtctgtcactaaacctctggacagagaggagagagcctcctaccatctcaga
gcccatgcggtggatattaacgggaaccaaatggagcctcctattgatctgtacatttat
gtcattgacatgaatgacaacagacccgagtttaagaatcaggtctacaacggatcagtc
gctgaagggtccaaaccaggcacttctgtaatgcaggtaacggcctttgacgccgacgac
agcaccacggcaaacggactggtgcactatcgcatcctgagccagacaccacacatcccc
atacctaacatgtttactattaacggagccaccggagagatcagcaccatcgctacgggc
atcgacagagagaaagtgtctcagtacaccatcatagtccaggccaccgatatggagggc
agcctgaacttcggcctgtccaacaccgccacggcccttattagcattactgacatcaac
gacaaccctccggagctggactctaaaactttcctaggagaggtcccagagaacgctgtg
ggtgtggtggtggccaatttgacagttagagacaaggatcagcctcatacacccaactgg
aatgctgtctataggattacaggaggagattcaatgggccatttcgccatacgcactgat
gagatcaccaatgacggcaaggtcatagtggttaagccggtcgactatgagaggaacgac
gccttcacgctgatggtggtggtctcgaaccaagctcacctggccagcgggatcccctcc
tcgccatcgtcctccgctgcggtttcaatcaaagtactggatgtcaacgaggcccccgtc
ttcccgtccaaccctaaaatcatccgttttgaagaaggagtgcctgctgacaccaccctc
gctactttcgctgcactggatccagaccgcttcatccagcagactatcaggtactccaaa
ctgtcagatccagccaactggctgaaaatcaacaggaccaatggaaggattaccaccaca
gcggtgctggaccgtgaatcgccgtatatgaagaagaacgtgtacgaagcaacctttttg
gctgtggacaacggttcccctcctgccacaggaacgggtactctccagatttatttgata
gatgtgaatgacaacgtgcctgtcttagttcctcaagaggctctggtctgcgagaggtca
cgacacggctatccagtcaatatcacagcttcggatttagattcagagcccaacgccggc
ccatatgtcttcgagctgccctcttacccctcttctgcacgccgtaactggaccatttca
cgcctcaatggtaattatgcccagctgaaactgcggatcccgtacctggaggcaggcatg
tacagagttcccattttagtttccgactcaggaaatcctcccctgtccaacacctcggtt
ttgaaggtgaaggtgtgtccctgtgatgaaaacggagactgtactgtgatcggggcagtg
actgtggctgggctgggaactggagccatcatcaccatcctcatctgtatcattatactg
ctcagtatggttctgttctttgtagtgtgggtgaagcgaagggagaaggagcgtcagacg
aaacccttattgatcgaccctgaggatgacgtcagagataatatcctgaagtatgatgaa
gaaggaggaggagaggaagatcaggactatgacctgagtcagctgcagcagcccgagtct
ctagatcacataatgagcaagcctgcaggtgtgcggcgagtggacgagagacccgttatc
ctggaatctcagtaccctgtccggcccacggtaccacacccaggggacatcggggagttc
atcattgacggtctgcgcgcggcagataatgaccccaccgctcctccctacgactccctg
ctggtgtttgactacgagggcagcggctccacagcgggctccgttagctccctggactcc
tccagctccggagaacaggactacgactacctcaacgactggggtcctcgcttcaaaaag
ctggcagacctctacggaggagggggagaggactga
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