Labeo rohita (rohu): 127173321
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Entry
127173321 CDS
T09007
Symbol
hcfc1a
Name
(RefSeq) host cell factor 1a
KO
K14966
host cell factor 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03083
Polycomb repressive complex
lroh04980
Cobalamin transport and metabolism
lroh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
127173321 (hcfc1a)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
127173321 (hcfc1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127173321 (hcfc1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lroh01009
]
127173321 (hcfc1a)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lroh03036
]
127173321 (hcfc1a)
03029 Mitochondrial biogenesis [BR:
lroh03029
]
127173321 (hcfc1a)
Protein phosphatases and associated proteins [BR:
lroh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127173321 (hcfc1a)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
127173321 (hcfc1a)
HMT complexes
COMPASS/SET1 complex
127173321 (hcfc1a)
MLL-HCF complex
127173321 (hcfc1a)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
127173321 (hcfc1a)
Mitochondrial biogenesis [BR:
lroh03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
127173321 (hcfc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_5
Kelch_3
Kelch_1
Kelch_4
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
127173321
NCBI-ProteinID:
XP_050979079
LinkDB
All DBs
Position
11:25276744..25299316
Genome browser
AA seq
1805 aa
AA seq
DB search
MTSPGSVVPGTTGAPLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDEL
HVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWE
WKKLKPKAPKNGAPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELR
PGSNVVGWDIPVTYGVLPPPRESHTAVVYTEKTTKKSRLVIYGGMSGCRLGDLWTLDIDT
LTWNKPAISGAAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACL
NLDSLSWETVLMDTLEDNIPRARAGHCAVAINNRLYVWSGRDGYRKAWNNQVCCKDLWYL
ETERPNPPSRVQLVRANTNSLEVSWGAVSTADMYLLQLQKYDIPSATAATSPALNAAPSL
PGNSPKSPAPAAAAPSAQSLPQSGITLVPQAASPTASILPSTPASPVAASTARGPAILKV
AAPQSGTGTSIVTVRQATQAGKSPVTVTSLPAGVRMVVPTQTTQGTPIGSSPQMSGMAAL
AAAAAATQKIPPSPGATVLNVPAGATIVKTVAVTPGATTLPTTVKVASPVMVSNPATRML
KTAAAQVATPTVSSPTTAARPIITVHKSGTVTVAQQAQVVTTVVGGVTKTITLVKSPLSM
GGNLISNLGKVVSVVQTKPVQTAAVTGQASSNPVTQIIQTKGPLPPGTILKLVTSADGKP
TTIITTSQAGGTGNKPTILGISGMSPTTTKPGTTTIIKTIPMSALQQGAAGVTSSTGVKS
PITIITTKVMTSGTGTPGKIITAVPKIGTAAGQQGLTQVLLKGAPGQPGTILRTVPMGGV
RLVSPVSGVKPTVTTLVVKGTTGVTTLGTVTGTVSTSLAGGSLASANATLATPITTLGTI
ATLSSQVINATAVSAAQSNLTTVSSTMQPTQVTLITTPSGVEAQPGQDLPVSILASPTSE
QPTSTESGAGDASGSVTLVCSNPPCETHETGTTNTATTATANMGAGPAGTVQRVCSNPPC
ETHETGTTNTATTASANMGAVQRVCSNPPCETHETGTTNTATTASANMGTAPAGTVQRVC
SNPPCETHETGTTNTATTASSNMGGNQTGTVQRVCSNPPCETHETGTTNTATTASSNMGI
APAGTVQRVCSNPPCETHETGTTNTATTASSNMGGNQAGTVQRVCSNPPCETHETGTTNT
ATTATCSMETDEGTAQQSSEASESTTSTEGLPSTAAPQSRAITIVTQATPLPGPAVPSIS
SITESSSEAGAEPVVMESSEAESLQTEGQAEAEAVAMQAEFQTAAVAVAMPSDFQAEAAA
LPSDFQGEAVAVAMQAQSQAEEGAVPMEHDASSMAETAQEQLPTAEMEGVEAASASQAEA
LTLPPELMSDGQPTTLMVTGLTPEELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAV
MSSGDAGGDDQQTHTIPIVLTQQELAALVQQQQQLQAAQQQAAAQAALPTEGLAPADSLN
DPSSESNGHNEIAAATTTVVGLLPSTSAETLAPSSTLAPAVVASPAKMQAAAALTEVANG
IEAAKQNPPTVTIKPQVKKENQWFDVGIVKVTNMVVTHFYMPADDSAYVEDDSGTIPDYS
QMKRVDLQPGTAYKFRVAGINTCGRGTFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLT
WEPPSVTSGKITEYSVYLAIQSSQTTEAKPSAPAQLAFMRVYCGPNPSCLVQSSSLSNAH
IDYTTKPAIIFRIAARNEKGYGPATQVRWLQESNKDGLSAKPAPKRAVSSPDTKGIGQKK
ARMDQ
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcccccggttccgttgtgcctggaaccaccggagctccactgcagccgcgatgg
aagcgggttctgggatggtccgggccggtaccccgaccgagacacgggcacagagccgta
gccatcaaggagctgatggtcgttttcggcggaggaaacgaaggaatcgttgacgagttg
cacgtttataatacagcaacaaaccagtggttcataccagctgttcgtggagacattcct
ccaggctgtgcagcttatggatttgtatgtgacggcacacgtctattagtgtttggtgga
atggtggagtatggaaagtacagcaatgacctttatgaattacaggcaagcagatgggaa
tggaaaaaattgaaaccaaaagcccctaaaaatggagcgccaccatgccctcgcctgggc
cacagtttttctcttgtgggcaacaagtgctacctttttggggggcttgccaatgacagt
gaagaccccaagaacaacattcccagatatttgaatgacctttataccctcgagctgcgt
ccgggctctaacgttgtgggctgggatataccagtcacatatggagtactgcctcctcca
agagagagccacactgctgtagtttatacagaaaaaactactaagaagtcccgtcttgtt
atatacggaggaatgagtggttgccgtttgggagatctttggacgttagatattgataca
ctgacctggaacaagcctgcaataagcggcgcagctcccctcccccgtagcctccactca
gccaccactattacaaacaaaatgtatgtttttggtggctgggtccccttggtgatggat
gatgtgaaggtggccacgcatgagaaggaatggaagtgtacaaacacactggcctgcctg
aacttggactccttgtcatgggagaccgttttgatggacactttggaagacaacatacca
cgtgcacgcgcaggacattgcgctgttgctattaacaacagactttatgtttggagtgga
cgtgatgggtaccgcaaagcttggaacaatcaggtgtgctgcaaagacctgtggtacctg
gagacagaacgacctaatcctccttcgcgggtgcagcttgtccgggccaacacaaattct
ttagaggttagctggggagcagtgtctacagcagacatgtacctgcttcagcttcagaaa
tatgatatcccatcagccactgctgccacatcaccagctctcaatgcagctccctccctc
cctggaaactcgcctaagagtccagcacctgctgctgcagctccatctgctcagagtctg
ccacaaagtggcatcaccctcgtgccccaggctgcttctcccacagcctcaatcctgccc
agcacacctgcaagtcctgtggctgcctcaacagcacgtggcccagctattttgaaagtc
gcagcccctcagtcaggcaccgggacgtcgattgtcactgtgcggcaggccacccaggct
ggaaaatccccagtcactgtgacatcacttcctgcaggtgttcgcatggtagtgccaaca
cagaccactcaaggaacgcccattggcagcagccctcagatgagtgggatggcagctttg
gccgcagctgctgcagccacacagaaaatccctccttcccctggagccactgttctcaat
gtgccggctggggccacaattgttaaaacggtagctgtgacacctggggccaccactctc
cccaccacagttaaagtggcatcacctgtcatggtaagcaaccctgccactcgcatgcta
aagactgcggctgcacaggtggccactcctacagtgtccagtcccaccacagctgctcgg
cccatcatcactgtgcacaagtctggcacagttactgtagcccaacaggctcaggtcgtg
actacagtggtgggtggagtcaccaagaccatcactcttgtcaagagcccactttccatg
ggaggaaacctgatctccaacttgggcaaggtggtgtcagtggtacagaccaaaccagtg
cagacagctgctgtgactggacaggcctcctccaacccagtgactcaaattatacagaca
aagggtcccctcccacctggcaccattctgaagctggtaacgtctgcagatggaaaacca
accaccataattaccaccagtcaagcaggaggcacaggaaacaagcccactatcttgggc
atcagtggcatgtcccccactaccaccaaaccaggcaccaccactattattaaaacaatt
cccatgtctgctctacagcagggagctgcaggtgtgactagtagtacaggggtgaagagc
cctattaccattatcaccacaaaggtgatgacatctggaacaggaactcctggcaaaatc
attacagcagtgcctaagattggtacagcagctggtcagcaaggcctaacacaggttctt
ctgaagggagctcctggtcagcctggaactatccttcgcactgtgccgatgggaggagtg
cgtctcgtgtctccagtatctggggtcaagccaactgtaaccacgttggttgtgaaggga
acaactggtgtgacaactcttggcacagtcacaggaacagtttctaccagcttagctgga
ggaagtttagccagtgccaacgccaccctggcaactcccatcaccactctggggacaatt
gccaccctctccagccaggtcattaatgctaccgctgtgtcggctgctcagagcaacctg
accactgtcagctccaccatgcagcccacccaggtgactctcataactacacccagtggt
gtggaggctcagcctggccaagatctgcctgtatccatcctggcctctcccacctctgag
cagcccacctctactgagtctggtgcaggcgacgcttctggcagtgttactttagtgtgc
tccaacccaccctgtgagactcacgagacgggtaccaccaacacggccaccacagcgaca
gcaaatatgggcgctggaccagctggcacagtacagagagtgtgttccaacccgccatgc
gaaacgcatgaaactggtacaacaaacaccgccaccacagcatctgccaacatgggcgct
gtacagagggtctgctcaaacccaccatgcgaaacccacgaaacgggcaccaccaataca
gcaaccacagcatctgcaaatatgggcactgcgcctgctggcactgtccagagggtgtgc
tccaacccaccctgtgagacccacgaaacgggcaccaccaatacagcaaccacagcttca
tccaacatgggcggaaatcaaacgggaacggtgcagagggtctgctcaaacccaccatgt
gagacccatgaaacgggcaccaccaacacagcaaccacagcatcttcaaatatgggcatt
gctcctgctggcactgtccagagggtgtgttccaacccaccctgtgagacccacgagacg
ggcaccaccaacacggcaactacggcttcatctaacatgggcggaaatcaagcgggaacg
gtgcagagggtctgctcaaacccaccatgcgagactcatgaaacgggcacgacaaacacc
gcaacgactgcgacctgcagtatggagacagatgagggaacagcccaacagagtagtgag
gcttcagaatctaccaccagtacggaaggcctgccgtccactgcagcaccacagagcaga
gccattaccatagtcacacaagccacacctctaccaggaccagctgttccgtcgatctct
tcaatcacggagtcatcctcagaggccggagctgaaccagttgttatggagagctcggag
gcagagtctttgcagacagaaggccaggctgaagcggaggcagtcgccatgcaggcagag
ttccagacagcggcagtagcagtagctatgcccagtgacttccaggcagaggctgcggcc
ttgccaagtgacttccagggagaagccgtagcagtagctatgcaggcacagagccaggcg
gaggaaggggcagttcccatggagcatgacgcttctagcatggcagaaacggctcaggag
cagctaccgacagcagagatggagggtgtagaggctgcatcagcatcacaagccgaggcg
ttgacattgccaccagagctgatgtcagatgggcaacccacaacgctgatggtgacagga
ctgaccccagaggagctggccgtcacggcagccgcagaggcagcggcccaggccgcagcg
acagaagaggcccaggccctcgccattcaggctgtactacaagcagcacagcaagctgtt
atgagttcaggtgatgccggaggagacgaccagcaaacccacaccatacccatcgttctg
acccagcaggaactagcggctttggttcagcagcaacagcagctccaggcagcccagcag
caagctgctgcccaggccgcattacccaccgagggcttggctccggctgacagcctaaat
gatccatcctcagaaagcaatggacacaatgagattgccgctgccacaactacagtagtc
ggactgctgcctagcacttcagcagagaccttggctccatccagcacattagcacctgca
gtagttgctagtccagctaagatgcaggcggctgcagctctgactgaagtggccaatggt
atcgaggctgcgaagcaaaaccctcccactgttaccatcaaacctcaagtgaagaaagaa
aaccagtggtttgatgttggcattgtcaaagtgaccaatatggttgtaacgcatttctac
atgcctgcagatgactcagcttatgttgaggatgattctggcacaatcccagactacagc
cagatgaagagggtggaccttcagcccgggacggcctacaaattccgtgtggcgggtata
aacacgtgtggccgtggaaccttttctgaaatatctgctttcaagacctgtttaccgggc
ttcccaggagcaccatgtgccataaaaatcagcaagagtccagacggtgcccaccttaca
tgggagcctccgtccgtgacatcaggaaagatcacggagtactctgtgtatttggccatc
caaagcagccagaccaccgaggcgaaaccctcggccccagcccagcttgccttcatgcgt
gtttactgtgggccaaacccctcctgcctggtccagtcctccagcctgtccaacgcccac
atagactacaccaccaaacccgccatcatcttccgcatcgctgcacgcaacgagaaaggt
tatggcccagctacacaagtgcgatggctgcaagagtctaacaaagatggcctttctgca
aagcctgccccaaaaagagcagtttcttcaccagatacgaaagggattggtcagaagaaa
gcaagaatggaccagtga
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integrated database retrieval system
