Labeo rohita (rohu): 127173448
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Entry
127173448 CDS
T09007
Symbol
eif4a3
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03013
Nucleocytoplasmic transport
lroh03015
mRNA surveillance pathway
lroh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127173448 (eif4a3)
09122 Translation
03013 Nucleocytoplasmic transport
127173448 (eif4a3)
03015 mRNA surveillance pathway
127173448 (eif4a3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127173448 (eif4a3)
03041 Spliceosome [BR:
lroh03041
]
127173448 (eif4a3)
03009 Ribosome biogenesis [BR:
lroh03009
]
127173448 (eif4a3)
03012 Translation factors [BR:
lroh03012
]
127173448 (eif4a3)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127173448 (eif4a3)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127173448 (eif4a3)
mRNA cycle factors
Stress granule specific factors
127173448 (eif4a3)
Spliceosome [BR:
lroh03041
]
Complex C
Other components
EJC/TREX
127173448 (eif4a3)
Ribosome biogenesis [BR:
lroh03009
]
Eukaryotic type
90S particles
Helicases
127173448 (eif4a3)
Translation factors [BR:
lroh03012
]
Eukaryotic type
Initiation factors
eIF-4
127173448 (eif4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
TniB
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
127173448
NCBI-ProteinID:
XP_050979312
LinkDB
All DBs
Position
11:13029977..13038300
Genome browser
AA seq
406 aa
AA seq
DB search
MAAAAAPVRKRILKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCISVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccgcagctcctgtgaggaagaggatcctgaaggaggaagacatgacgaaa
gtcgagtttgagacgagcgaagaggtggatgtgacgccgacgtttgacacgatgggcctg
agggaagatttactgcgcgggatctacgcgtacggttttgagaaaccatcagccatccag
cagagagccatcaaacagatcatcaagggacgagacgtcatcgcccagtcgcagtctgga
accggtaaaacagccacgttctgtatctcagtgctgcagtgtttggatattcaggttcga
gagactcaagcgctgattttggctccgaccagagagttagcaggacagatccagaaggtg
ctgctggcgttgggcgactacatgaacgttcagtgtcacgcctgtatcggaggcacaaac
gtcggcgaggacatcaggaagctggactacggtcagcatgtagttgctggaacgcccgga
cgagtattcgacatgatccgcaggaggagtttgaggactcgtgccattaagatgctggtg
ttggatgaagcagatgaaatgctcaacaagggttttaaggaacagatctacgacgtgtac
cgatacctgccgcccgccactcaggtgtgtctgatcagcgccacactgccacacgagatc
ctggagatgaccaacaagttcatgaccgaccccatccgcatcctggtcaaacgtgatgaa
ttgacgctggagggtatcaagcagtttttcgtggccgtcgagcgagaggagtggaagttc
gacactctttgtgacctgtacgacacgctgaccatcacacaagccgtcatcttctgcaac
accaaacgcaaggtggactggctgacggagaagatgagggaggcgaatttcacagtgtcg
tcgatgcatggagacatgccacagaaagagcgagagtccatcatgaaggagttcagatct
ggagccagtcgagtgctgatctccacagacgtttgggccagaggtctggatgtgcctcag
gtttctctcatcattaactacgatcttcccaacaacagagagttgtacatccacaggatt
ggtcgatcaggtcgttacggcaggaagggtgtggccatcaacttcgtgaagaacgacgac
atccgtatcctgcgtgatattgagcagtactattccacacagatcgatgaaatgcccatg
aacgtggccgatctgatctga
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