Labeo rohita (rohu): 127173493
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Entry
127173493 CDS
T09007
Symbol
col6a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127173493 (col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127173493 (col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127173493 (col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127173493 (col6a1)
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127173493 (col6a1)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127173493 (col6a1)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127173493 (col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
127173493 (col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
127173493
NCBI-ProteinID:
XP_050979365
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All DBs
Position
11:19520615..19566706
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AA seq
1007 aa
AA seq
DB search
MALNGYILTALCALWAGIIAADDRTPSFRECPVDLFFVLDTSESVALRAKPPEFYINQLK
TFTKNFIDQLKDLRQPCDRDVTWNSGALHYSDDTELVMGLVDLNTKRAELKAAIDKIKYI
GKGTYTDCAIREGISELLRAGSHYHENKYIVVVTDGHPVTGYKEPCGGIQEAANEARQHA
IKVFAVAISPDQEDTRLSIIATDASYRQNFTAADNSRSTQMATIKTIINMITNETKDVCC
SFDCNAPGGPVGPRGDPGQRGEGGRPGMPGEKGDFGPPGSPGDPGPVGYQGMKGDQGIRG
DKGERGHKGFKGDKGQHGLDGVDGRKGEPGFTGLPGCKGSPGPDGLQGEPGPKGDPGPYG
PKGQRGDPGRNGEPGRPGNYGPSGAKGDRGPRGGNGDKGERGDDGPPGPDGPRGERGTPG
EKGEQGSRGNRGPRGDPGEPGPRGEQGREGSAGPNGEPGEPGRAGAPGYRGDEGLTGPEG
PKGPRGIKGAPGDRGLMGERGEDGPQGNGTEGCHGFQGYPGPRGDSGAPGGKGTPGPKGD
DGEPGDPGTDNNRPGPPGPRGPKGHRGREGNPGPPGPPGPQGADECEILDIIMKMCSCCE
CKCGPLDIAFVVDSSESIGASNFAIAKEFIVTLMDRLKMRQFGANESRIGVVQYSGSKAQ
EVVQLGDPNIKTLTDLKQAVKDFHWLAEATYTGEALQFSLNNMINKLRTEKSIVLVLTDG
RSDTSRDNVSLNVLCGKGLKVGGVGVIDYANRNPNPEQIDEIACKNDPRKGFSFILDNFG
ILLDDSFLQNMTEKICEEKKCPNYTCPISFNADTDILIMMDSSASVGSKNFEMTKDFTKM
LAKRFLSAERAGFEVKVGVGQYSNNANLEAEFSTDAAQVVSQITEAKFQNAGTQVTNALN
FAIERFRGGRTRKKKVLVFSDGRSQGVNDIQIKNAVEQVFNAGIELYVLAVGNQVNEEHL
RTLVSRGRPYDNTYAYRHLFKSSDYRSLVTGVFYQTVSRKISLXSRG
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttaatggatatatattgaccgctctgtgcgcactttgggcagggatcatcgct
gcggatgaccgaacaccctcctttagagagtgtcctgtggacttgttctttgtgttggac
acgtctgaaagtgtggccctcagagccaaaccgccagagttttacatcaaccagctcaag
accttcactaagaatttcattgatcagcttaaggacttacgacaaccatgtgatcgcgac
gtgacgtggaactctggagcgctgcactacagtgacgacactgagttggtgatggggttg
gttgacctgaacacaaagcgtgctgaactgaaggctgccatagacaaaatcaaatacatc
ggcaaaggaacatacaccgactgtgccatcagggagggaatctctgagctgctccgagcg
ggctcccattatcatgaaaataagtacattgtggtggtcactgatggtcaccctgtgacc
ggctacaaggagccatgtggtgggatccaggaggccgctaatgaggcacgacagcacgcc
atcaaagtgttcgctgtggccatctcacctgaccaggaggacaccagactttctatcatt
gccacagatgccagctacagacagaacttcaccgctgcagacaactcccgctccacgcag
atggccactataaaaaccatcatcaacatgattacgaatgaaacgaaggacgtgtgctgc
tcctttgactgcaatgctcctggaggccctgtgggaccccgtggtgacccaggacaaaga
ggagagggtggaagaccaggcatgccaggagaaaaaggagattttggtcctccgggaagt
cctggtgatcccggtccagtcggttaccaaggaatgaagggagaccaaggaataagaggc
gataagggagagagaggtcataaaggcttcaagggagacaaaggtcaacatggtcttgat
ggcgtagatggacgcaagggtgagccgggattcactggccttccaggctgcaaagggtca
ccggggccagatggcttgcaaggagaaccaggtcctaaaggagaccccggcccgtatgga
cccaaaggacaaagaggagatcctggcagaaacggtgaaccaggaagacctggaaactat
gggccttcaggtgcgaagggagacaggggtcctcgtggaggcaatggcgataaaggcgag
agaggagatgacggaccacccggaccagatggcccaagaggagagagaggcacacctggt
gagaaaggtgaacaaggttcccgtggtaacagagggcccagaggcgaccctggtgaacct
gggccccggggtgaacaaggacgtgagggatcagcagggccaaacggagagccgggcgag
ccaggaagagcaggggcaccaggttatcgtggcgatgagggtcttactgggccagaggga
cctaaagggcccagaggaatcaaaggggccccgggagacagaggcctgatgggagagagg
ggtgaagatggaccacaaggaaatggaactgagggctgccatggattccagggttatcct
gggcctaggggagattcaggggcacctggtggaaaaggaacccctggacccaagggagac
gatggagagccaggtgatcctggaacagacaataacagaccaggaccacctgggcccaga
ggaccaaaaggtcacagaggacgtgaaggaaatcctggaccaccaggaccacctgggcct
caaggagctgatgaatgtgagattctggatatcatcatgaagatgtgctcttgctgtgaa
tgcaaatgcggacccctggacatcgccttcgttgtggacagctctgagagtattggagct
tctaactttgccatcgctaaagaattcattgtgacgctaatggacagactcaagatgaga
cagtttggtgccaatgagtctcgtattggcgtggtgcaatacagtggttccaaagctcaa
gaggttgtacagcttggtgaccccaacattaagaccctgacggacctaaaacaagctgtg
aaagacttccactggctagctgaagccacgtacactggagaagctctgcagttctcgcta
aacaacatgattaacaagcttagaacggagaagagcatagtccttgtccttactgatgga
cgctctgacacctcaagggacaacgtgtctctaaacgtgctgtgcggcaagggactgaag
gttggcggtgttggagtgatcgattatgcaaataggaatcccaatccagaacagatcgat
gagattgcgtgtaaaaacgatcccagaaaaggcttctccttcatcttagacaactttggt
attcttctggatgacagtttcctccaaaacatgactgagaaaatctgtgaagaaaaaaag
tgtcccaactatacttgtccaatttcatttaatgccgacaccgatatcctcatcatgatg
gacagctcggccagcgtgggctccaagaactttgagatgaccaaggacttcacaaaaatg
ctggctaagcgctttttgtcagcagaaagagcaggcttcgaggtcaaggttggcgttggt
cagtacagcaacaatgccaacttagaagccgaattttccacagatgccgcccaggtggtc
tctcaaatcacagaagccaagttccagaatgccggtactcaagtaacaaacgccctcaac
ttcgccattgagcgcttcaggggcggcaggacgaggaagaagaaggtgctggtgttttca
gacggacgttctcaaggcgtcaacgacatccaaattaaaaacgctgtggagcaagtattc
aatgcaggcatcgagctgtacgtgctggctgtgggcaaccaggtaaacgaagaacacctg
cgcaccttggtgagccgaggccggccctatgacaacacgtacgcctaccgtcaccttttt
aaatcatccgattaccgctcgttggtcactggggtcttttaccaaactgtatcccgcaag
atttccctgtagtcgagggggtga
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