Labeo rohita (rohu): 127173805
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Entry
127173805 CDS
T09007
Name
(RefSeq) LOW QUALITY PROTEIN: integrin alpha-X-like
KO
K06461
integrin alpha M
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04145
Phagosome
lroh04514
Cell adhesion molecules
lroh04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
127173805
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
127173805
09142 Cell motility
04810 Regulation of actin cytoskeleton
127173805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127173805
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127173805
04515 Cell adhesion molecules [BR:
lroh04515
]
127173805
04090 CD molecules [BR:
lroh04090
]
127173805
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127173805
Membrane trafficking [BR:
lroh04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
127173805
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
127173805
Cell adhesion molecules [BR:
lroh04515
]
Integrins
Integrin alpha subunits
127173805
CD molecules [BR:
lroh04090
]
Proteins
127173805
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
127173805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
ITGAX-like_Ig_3
FG-GAP
Integrin_A_Ig_2
VWA_2
Integrin_A_Ig_1
FG-GAP_3
Ploopntkinase3
Motif
Other DBs
NCBI-GeneID:
127173805
NCBI-ProteinID:
XP_050979756
LinkDB
All DBs
Position
12:31279819..31342906
Genome browser
AA seq
1161 aa
AA seq
DB search
MLLFCLCFSSLRKLAPFISPLSLTSIMTMDRDFCLSLYLFCAFQAVLTFNIDPVTWKYFT
RNSDVGFGYRIIQRDTSSLLVSDPLVQNSHNARGQVYSCAISQETCLPVTINVPSEAVNM
SLGLSMIKDTQSFNSVVCGPTIPKDCKVLTTLNGMCFIISRNNAVSAPIPSTLRSCPLEI
DIAFLMDGSESVEDVDFVKMKTFVITIIQSFSKCNSQFAVAQFSTGFEIHSKFEAVNDID
SWRTRIGEIKQQKGMTYTAKAINKLVNELFITEGGARQSAIKILIVITDGRSNDEPHLRG
AVEKAEKKNIIRFAIGIGEAFDDSRTKQQLHVIASAPVAEHVFNVTDFEALDGIVDKLEE
NIAIEGVQSTGDSATMEFAQDGFTAVFTSNVDLIMSSVGAFQWKGGYQEQYHNGHASDFH
VGTEQDSYLGYSMTIATRSKKKFVILGAPRYRHKGQVSISIIGNIATNLLVDSPKPQIGS
YFGAEVCVVDLNSDAKTDLLLISAPTYVDSHSEGRVFVYFYSRQPYFTFSVVLVGMADQR
GRFGSSVASPADLNVDGFMDVLIGAPLEEDGQGSIYIFNGGVDQINPTYSQRIAGSSVCS
GLQFFGQALSQSSLDHSGDSLPDIAVGSKGAVLLLRTRPIVSVDVKVTYSPSKISTSKTN
CTKPLGNTLTVCFNMSGYKHAITDLAANVSYTLKLDAKRYNHRAYFLPKSHVLSDAVNVK
LDEVCKDHPFLIEACTEDYLNPLLNELMFIFEGLPSQSLENLQPVLLPWMNNTTLWTLDY
EMNCGSDNLCVDNLKMNFSFGSTNIEVGIMQKINVTVFVENRGENSYNTHFFLSYPYGLS
YRRIMPRVGRVNCHAKDGMRGISSGETTCQINKPLFTGNASAVFDIIYSINKERYFDQKV
TFSASVTSGNMIHSENSELVKTRNISVKHAIYVTMLRHTDASIYINFTSGKNNLEKTVKQ
ILEVKNEFRELNVTVFIRVPVKLGAENIWTNKNLQIPDCFRERDEWPTSTAFLKVLEKTN
ILNCSVAVCAVFRCDVNLMRNERKFYKISGNVSSGWIEQIGIRSASFQLVSTASLDYDED
KYIYFADSLSSVPVCELNTQVEVYEEPSILKEVIVGVIGGLMIISLITAVLYKSGFFKRK
AKQQIKDPAQEADEVDNLNEI
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgctcttgttctgtctttgtttttcatctctcaggaaattggcacctttcatctcacca
ctgtctctgacctcgataatgaccatggaccgggatttctgcctctctttgtacctgttt
tgtgcatttcaagcagtgctgacattcaatattgatcctgtgacctggaaatacttcaca
agaaacagtgacgttggctttggctatagaataatacagagagatacatctagtttgctt
gtgagtgatcctttagtacaaaacagccataacgcaagaggacaagtttatagctgtgcc
atttcacaggaaacttgcctgccagtgacaattaatgtgccttctgaagctgttaacatg
tctcttggactttctatgattaaggatacacaatcttttaattcagtggtttgtggtcca
accattcctaaggactgcaaagtacttaccaccctcaatggtatgtgctttattatcagc
agaaacaatgcagtgagtgcacctattccaagtactttgagaagctgccctctagaaata
gacatcgcttttctaatggacggctctgagagtgtggaagacgtagatttcgttaaaatg
aaaacttttgtcataacaataatacagagtttttccaaatgcaattctcagtttgctgtt
gcacagttttccactggttttgaaattcactccaagtttgaagcagtcaatgacattgat
tcatggaggacaagaataggagagattaaacagcaaaaaggaatgacctacactgcaaag
gctataaataaactggtgaatgagctgttcataactgaaggaggggcgaggcaatcagca
attaaaatcttaatcgttatcactgatggtagatcaaatgatgaacctcatctcagaggt
gctgttgaaaaggcagaaaagaagaatattatccgatttgctattggcatcggtgaagct
tttgatgattcccgcacaaagcagcagttacatgttattgcatctgctcctgtcgctgaa
cacgtgtttaatgtgactgactttgaagcattggatggcatcgtggacaagctggaagaa
aacattgctattgaaggtgttcagtccaccggtgattctgctacaatggagtttgctcag
gatggatttactgcagtgtttacatccaatgtagacctgatcatgagttctgtgggtgct
ttccagtggaagggtggatatcaggaacaatatcacaatggccatgcatcagactttcat
gtgggaactgagcaagatagttacttaggttattcaatgacaatagcaacacgttcaaaa
aagaagtttgtgattttgggagcaccaagatataggcataaaggacaagtgagcatttca
ataattggaaatattgcaactaacctgcttgtggattcacccaagcctcagattggatca
tactttggagccgaggtgtgtgtggttgatctgaactctgatgcaaaaacagatcttcta
ctaatatctgcaccaacgtatgtagactctcattctgaaggcagagtttttgtgtacttt
tactctcggcagccatacttcactttttctgtggtgctggtaggaatggcggatcagaga
ggtcggtttggctcttctgtggccagtccagcagatctgaatgttgatggttttatggat
gtgctgattggagctcctttagaggaggacggacagggcagcatctacatctttaatgga
ggagtagatcaaataaatcccacatattcacagaggattgctggttcatctgtatgctca
ggtttacagttttttggacaagctctgagtcagtcctccctagatcacagtggagacagt
ctaccagatattgctgttggatcaaaaggagcagttttgcttctcagaactagacccata
gtgtctgtggatgtcaaggtaacctacagtccatccaaaatctcaaccagtaaaacaaac
tgcaccaagccgctgggaaacaccttgacagtatgcttcaacatgagcggatacaaacat
gctataacagatttggctgcaaatgttagttatacattaaagctggatgccaagcgatat
aaccaccgagcatacttcttgcccaaaagtcatgtcctcagtgatgctgtaaatgttaaa
ctagatgaggtgtgcaaagaccatccatttctcatagaggcttgtacagaggattatctc
aacccactgcttaatgaattaatgttcatttttgagggtctgccctcacaaagtctggag
aacttacagcctgttctcttaccatggatgaataacactaccttgtggacgttagattat
gagatgaactgtggatcagacaacctttgtgttgacaacctcaaaatgaacttcagcttt
ggatctactaacatagaggttgggatcatgcagaagatcaatgtgacagtgtttgtagaa
aacagaggagaaaactcatacaacactcacttcttcctcagttacccctatggactttcc
tacaggagaattatgcctcgagtgggcagagtgaattgccatgctaaagatggcatgcga
ggaatatcatcaggggagaccacctgtcagatcaacaaacctctattcacaggaaatgct
tcagctgtgtttgacattatttacagtattaataaagaaaggtattttgaccaaaaggtg
acattcagtgcatctgttaccagtggcaatatgattcactcggaaaacagtgaactggta
aaaacgagaaacatcagtgtaaaacatgctatctatgttaccatgttgagacatacagat
gccagcatttacataaatttcaccagtgggaagaataatcttgaaaaaactgtgaaacag
atattggaggtgaagaatgagtttagagagctaaatgtaacagttttcattagagtacct
gtaaaactgggagccgaaaacatctggactaataaaaacttgcagattccagattgcttc
agggaaagagatgagtggcccacttccactgcttttctgaaagtgctcgaaaagacaaat
atcttgaactgctctgtggcggtgtgtgcagtcttcagatgcgatgtgaatctgatgaga
aatgaaaggaagttctataaaatttctggcaatgtgagctctggatggattgagcagatt
gggattaggtctgcatcttttcagttggtcagtacagcatctctggattatgatgaggac
aaatatatttactttgccgattccctcagctctgttccagtttgcgagttaaacactcag
gtggaggtttatgaggaacccagcatcctaaaggaggtcattgtaggagttattggagga
ctgatgattatctcactcatcacagctgttctctataagtctggctttttcaaaagaaag
gccaagcagcagataaaggatccagcacaagaagctgatgaagtggataatctaaatgaa
atttaa
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