Labeo rohita (rohu): 127173806
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Entry
127173806 CDS
T09007
Name
(RefSeq) integrin alpha-X-like
KO
K06461
integrin alpha M
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04145
Phagosome
lroh04514
Cell adhesion molecule (CAM) interaction
lroh04517
IgSF CAM signaling
lroh04518
Integrin signaling
lroh04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
127173806
04517 IgSF CAM signaling
127173806
04518 Integrin signaling
127173806
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
127173806
09142 Cell motility
04810 Regulation of actin cytoskeleton
127173806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127173806
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127173806
04515 Cell adhesion molecules [BR:
lroh04515
]
127173806
04090 CD molecules [BR:
lroh04090
]
127173806
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127173806
Membrane trafficking [BR:
lroh04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
127173806
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
127173806
Cell adhesion molecules [BR:
lroh04515
]
Integrins
Integrin alpha subunits
127173806
CD molecules [BR:
lroh04090
]
Proteins
127173806
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
127173806
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
ITGAX-like_Ig_3
FG-GAP
Integrin_A_Ig_2
VWA_2
Integrin_A_Ig_1
FG-GAP_3
vWA_SIBA-E
Integrin_A_Ig_3
CTXphi_pIII-N1
Motif
Other DBs
NCBI-GeneID:
127173806
NCBI-ProteinID:
XP_050979757
LinkDB
All DBs
Position
12:31346432..31391437
Genome browser
AA seq
1128 aa
AA seq
DB search
MDQNFYIILCILCVSHSVMAFNIDPSTWKTFTSPQNVSFGYKVIQKDTSSLIVSDPLIQI
NQAQRGQIYSCFVTEGTCSPQNIIVPLEAVNMSLGLSMVQDPRSSKLAICGPTISKKCVT
VTTYNGMCFISENNVLKPPIPSVLRDCPDQIDIAFLLDGSGSVGTSNFVTMKTFVVNMIK
RFTERDGQFAIAQYSHNCEIHYNFNNLKIQDSTWESKVKAIPYNGGATYTARAILKLVNE
LFTSAGGARPSAKKILVVITDGVSHDRGSLSYVASQAEAKNIARFAIGVGNAFNDFNAKE
ELKTIASDPDTDHVFKVTDFNALNNILQKLEENIIAIEGTQSSGDSSRMEFAQDGFSTAF
TAYKSVLVSAVGAFQWKGGYQEYFPNSSFRRGIEHESYLGYSMAVATVSSTNYVILGAPR
YKHQGQVLVSQATQYKLLDSPRPQIGSYFGADVCVVDLNSDSDTDLLLISSPTYMHPDRE
GKVFVYIFTSQFVFSDVVLVGMAGQRGRFGSSLASPADLDGDGFRDVLIGAPLEEDGQGS
IYIFNGGVDQINPTYSQRIGGSSVQSGLRFFGISLSQSSLDQSGDRLPDIAVGSMGAVQL
LRSRPIMFLNTQVSYNPSKIPTSVTDCTKPLQNFLTVCFTMSGYKQSLTDLAANINYTIT
LDAKRQKYRAYFPTKNRLLSDVMYIELQEVCKSHAFFIEACPEDALNPLSNQLNFTSEGL
PSKTMQNLRPVFHPEIKTTTEHNVNFEINCGTDNLCVDDLRMDFNFSGSANIEVGIMQEI
NVTVFVENRGENSYNTRFILNYPFGLSYRRITYKQGRVECVSLDGVQGVKLGETTCFISK
PILKDNSQVVFEITFSINKESTLGRNVTFKAEVSSGNDKHSSSRDILKEKAIGVKYAIYT
ALIRHENSTIHINFTSGKKDLMKPVQQIIKIENDLRELNFKVFIRVPVKVGNADIWTNSS
LQISGCKEENIQKPVITNFIDIIKSQHIVNCSVAACVEFSCDVTLLKNERILYNITGNVS
SGWIEQTGLRAAVFQLVSSASLDYDKSKYVFFSSDSQETAPSVQINTQVEVYEEVDLTKE
IIGGVIGGLLLLALITAALYKAGFFKSQYKQMLEEAKGDAGGQPNMPQ
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atggaccagaacttttacatcatactatgcatcctttgtgtgtctcactcggtgatggct
tttaacattgatccttctacctggaaaacgttcacttcaccacagaatgtatcctttggc
tataaggttatacagaaagacacatcaagtctgatcgtgagtgatcctttaattcaaatc
aatcaagctcaaagaggacaaatttatagctgttttgtcactgaaggaacctgctcacca
caaaacattattgtgcctttggaagctgtcaacatgtctcttggactttctatggttcaa
gatccacgttcttcaaagctggcaatttgtgggccaaccatttcaaagaaatgtgtaaca
gttaccacctacaatggcatgtgctttatcagtgaaaacaatgtgttaaagccaccaata
cccagcgttctgagagactgtccagatcagattgacatagcttttttattggatggatct
gggagtgtcgggacttctaattttgtgacaatgaagacatttgtggtaaacatgatcaaa
cgttttactgagcgggatggacagtttgccattgcacagtactcccataattgtgaaatt
cattacaatttcaacaacctcaaaattcaagacagcacatgggagtctaaggtgaaagct
ataccatacaatggaggtgccacttacactgcaagagccatcctaaaacttgtgaatgag
ttatttacatcagctggaggggcaagaccatcagcaaaaaaaatcttggttgttattacg
gatggagtgtcacatgacaggggctcattgtcatatgtagcatcacaggcagaggcaaag
aacatagcacgattcgcaattggggttggcaatgcttttaatgatttcaatgcaaaagag
gagttgaaaacgatcgcttctgatccagatactgatcatgtgttcaaagtgacagatttt
aatgcactgaataatattcttcaaaaattggaagagaatattattgccatagaaggaact
cagtcttcaggtgattcttccagaatggagtttgcacaggatggcttcagcacagccttc
acagcatataaaagcgtgttagtgagtgctgtgggagctttccagtggaaaggtggatat
caggaatattttcccaacagctcctttcgaagaggaattgagcatgaaagctatctaggt
tattcgatggctgttgcaacagtgtcaagcaccaactatgttattctaggagctccaaga
tacaagcatcaaggacaagtccttgtatcacaagccacacaatataaactgctggactct
cccaggcctcagattggctcatattttggagctgatgtttgtgtggtggatttgaacagt
gactccgatacagaccttctcttgatatcttcgccaacatacatgcatcctgatcgggag
ggcaaagtgtttgtttacatttttacaagtcagttcgttttttctgatgtggtactagtg
ggaatggcaggtcagaggggtcgttttggctcttctctagccagtccagcagatctggat
ggtgacggtttcagggatgtgctgattggagctcctttggaggaggatggacagggcagc
atctacatcttcaatggaggagtagatcaaataaatcccacatattcacagaggattggt
ggatcatcggtacaatcaggtttgcgattctttgggatttcactgagtcagtcctctcta
gaccagagcggagacagacttcctgatattgcggttggatccatgggtgcagttcagctt
ctcaggtccagacccatcatgttcttgaacacccaagtaagttacaacccatcaaaaatt
ccaaccagtgtaacagactgcacaaagccattgcaaaacttcctgactgtgtgcttcacc
atgagtggatacaaacaaagcctaacagatttggctgcaaatattaattacactataaca
ctggatgctaagcgacagaaatatcgagcttatttcccaaccaaaaaccgccttctcagt
gatgtgatgtacattgagttgcaggaagtttgcaaaagtcatgctttttttatagaggct
tgtccagaagatgctctgaacccattgtccaatcagttaaattttacatctgagggtctt
ccatctaaaacaatgcaaaacttgagaccagtattccatccggagataaagaccactaca
gaacacaatgtaaattttgagataaactgtggaactgataatttatgtgttgatgacctc
agaatggatttcaatttctctggatctgctaacatagaggttgggatcatgcaggagatc
aatgtgacagtgtttgtagagaacagaggagaaaactcatataacacacgcttcatcctc
aactacccctttggactttcctataggagaatcacatataaacagggcagagtggagtgt
gtgtctctggatggtgtgcaaggagttaaactaggagaaactacctgcttcatcagtaaa
cctatcctcaaggacaactctcaggttgtgtttgagattacattcagtatcaataaagaa
agcacactgggccgaaatgtgacgtttaaggctgaggtctcgagcgggaatgacaaacac
tcgagcagcagggatattttgaaagagaaggctattggtgtcaaatatgccatctatact
gccttgataaggcatgaaaattccaccatccacattaattttacttcagggaaaaaggat
cttatgaaaccagtccagcagataataaagattgaaaatgaccttagagaattaaatttc
aaggttttcatcagagtaccagtgaaagttggtaatgctgacatctggactaattcaagt
ctgcaaatttctggctgtaaggaggagaacattcagaagcctgttatcaccaattttatt
gacattattaaaagtcaacatatagtgaactgctctgtggcggcatgtgtcgagttcagc
tgtgacgtcactctcctaaagaatgaaagaatactctataatataactggcaacgtcagc
tctggatggattgagcagactggactcagagctgctgtttttcagctcgtcagttcagca
tctctggattatgacaagagcaaatatgttttcttttcctctgattctcaagaaactgca
ccatctgtccagattaatactcaagtggaggtctatgaggaggtggacctgactaaagag
atcattggaggagtaataggaggactgctgctactggctctcatcactgctgccctctat
aaggctggattcttcaaaagccagtacaagcagatgctggaggaggcaaaaggggatgca
ggaggacaaccaaacatgccacaataa
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