Labeo rohita (rohu): 127173850
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Entry
127173850 CDS
T09007
Symbol
ercc4
Name
(RefSeq) DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03420
Nucleotide excision repair
lroh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
127173850 (ercc4)
03460 Fanconi anemia pathway
127173850 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lroh03032
]
127173850 (ercc4)
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127173850 (ercc4)
DNA replication proteins [BR:
lroh03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
127173850 (ercc4)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
127173850 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
Motif
Other DBs
NCBI-GeneID:
127173850
NCBI-ProteinID:
XP_050979848
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All DBs
Position
12:18411175..18421320
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AA seq
894 aa
AA seq
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MASPLLEYETEMFLSLFSTDGLLITAEGLGIDRILLHFMKVYSEEGSLVLLLNTTTPEQE
YFTEQLRAEGVSHLPQTVTSDVHSNDRYNVYTKGGVLFVTSRILVVDFLTDRIPANLITG
ILVYRAHKIIESCQEAFILRLYRQKNKTGFIKAFTDKATSFSSGFCKVERVMRNLFVKKL
FLWPRFQASVNTTLEKHKPDVVELHVSLTPAMRAIQSSILDIMNACLKELKRYNPTLEAE
DLSLENSLGTSFEKTIRHYLDPLWHQLGSRTKSLVQDLKILRTLLLYLTQYDCVTFLNLL
ESLRTSQKSFGSNSGWLFLDSSTSMFVNARSRVYHIQESKKKLKVGETDQKQSALAPPKR
ELVLEKNPKWEALTEVLQEIEKENSSSEHEPGRVLICASDDRTCAQLKEYIQKGAEHLLN
RLYSRTIGKEDLQPDLLKLDKGWPKKDSARSKGKNGRPKKNKTNLKRPAKAERPSRISQM
ERQEDGAEKDLTENSEDERGLTEEVEEEEEEEILLDVSSDDYYGILKEPLTVIHPLKGCS
DPYSLTRVLHEVDPMFVVLYDAELSFVRQLEIYKGSRPGKPLRVYFLIYGGSTEEQRYLT
VLSKEKQAFEHLIREKASMVVPEEREGREDTNLDLVRSHEPASATTDTRKAGGREEVKEP
QRIIVDMREFRSELPSLLHQRGLDIDPVTLEVGDYILTSEICVERKSVSDLIGSLQSGRL
YTQCLSMSRFYRRPVLLIEFDPAKSFSLVARSDFRQEISASDITSKLTLLTLHFPRLRLL
WCPSPYVTAELFQELKQGRPEPDAATAQAVTAESETVMESADLYNPGPYDFLLRMPGVNV
KNFKSLIKHASCLADLLTFSQEKLSEILGSSSNARQLYEFLHNPMNVVPAQKNK
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcccgctgctggagtatgaaacggagatgtttcttagtctgttcagcacagac
ggactgctcattacagccgaggggctcggaatcgaccgcattctcttacacttcatgaaa
gtatattcagaggagggcagtctggtgcttttattaaacacaaccactcctgaacaggaa
tattttacagagcagctccgtgctgaaggagtgagccatcttccccagactgtgactagt
gatgtgcatagcaatgacagatataatgtgtacactaaaggaggagttctctttgtgacc
agccgcatcctagtggtggacttccttacagacagaattcctgctaaccttataacagga
atcctggtgtatcgtgcgcataagatcattgagtcttgtcaggaggcttttattctgaga
ctttatcggcagaaaaacaagaccgggttcatcaaggcctttacggacaaagccacatcc
ttctcttccggcttctgtaaagtcgagcgtgtcatgagaaacctgtttgtgaagaagctc
tttctttggccaagatttcaagcatcagtaaacacaacgctggaaaaacataagccagat
gtggtggagctgcatgtgtctctgactccagcgatgagagccattcagagctctattctg
gacatcatgaacgcctgcttgaaagagctgaagcgctacaatcccactctggaagcagaa
gacctctctctggagaacagcctgggcacttcctttgagaaaacaattcgacattatctt
gacccactgtggcatcagctggggtccagaaccaaatctctcgttcaagacctgaagatt
ttaagaacccttcttctctacctcactcaatatgactgtgtcaccttcctcaatctcctg
gagtctttgagaaccagccagaaaagctttggtagtaattcaggttggttattcttggac
tcaagcacatcaatgtttgtaaatgctcgcagccgtgtgtatcacattcaggagtcaaag
aagaaactgaaagttggagagactgaccagaaacaaagtgccctagcccctccaaaaaga
gagcttgtgcttgagaaaaatccaaagtgggaagctctaacagaggtgctacaggagatt
gaaaaagaaaacagcagctctgagcatgaaccaggccgtgtgttgatatgcgcgagtgat
gacagaacgtgcgctcagctgaaggaatatatccagaaaggagcagaacacctactgaat
cgcctttattcacgaaccattggaaaagaagatcttcagcctgatttactgaagcttgac
aaaggctggcctaagaaagactctgctaggagcaaagggaagaatgggcggccgaaaaaa
aacaaaaccaacttgaagagaccagcaaaggctgagagaccatcacgaatctctcagatg
gagaggcaggaagatggagctgaaaaggacctaactgagaacagtgaagatgaaagaggg
ctgactgaagaggtggaggaggaggaagaagaagagattcttcttgatgtttcttccgat
gactactatggcattcttaaagagccactgactgtcattcacccactgaagggatgcagc
gacccctacagtttgacacgggtgttgcatgaggttgacccgatgtttgttgttttgtat
gatgcagaactcagttttgtccggcagcttgagatttacaaaggcagcaggccaggaaaa
cctctccgtgtgtattttctaatatatggaggctcgacagaagaacaaaggtatcttaca
gtcctgagcaaagaaaaacaagcattcgagcacctcataagggaaaaggccagcatggtt
gtgccggaagagagagagggtagagaagacaccaacctagatcttgtccgcagtcatgaa
cctgccagtgccaccacagacacccgcaaagcagggggtcgtgaagaggttaaagagcca
cagcgaattatagtcgacatgcgggagttccgcagcgagcttccttcccttctgcatcaa
cgcggtctcgacattgacccggtcaccttagaggttggcgactacatattgacttctgag
atctgcgtagagcgcaaaagtgtcagcgacctcattggttccctgcaaagtgggcgtctt
tacacacagtgcctctctatgagtcgattctatcgccgccccgtgctacttatcgagttt
gaccccgcaaagtccttctccttggtggcccgcagtgactttcggcaggagatctctgcc
agtgacatcacctccaaactgactctcctcaccctgcatttcccccgcctgaggctgctc
tggtgcccgtctccttatgtgacagcagagctgtttcaagagctcaaacaaggccgtccg
gagcctgacgctgccacagctcaggccgttactgcagaatcggagacggtgatggaatca
gcagatctgtacaaccccggaccttacgacttcttgctacgtatgcctggagtcaatgtg
aaaaacttcaagagccttataaaacatgcttcctgtcttgctgatcttctaacatttagt
caggaaaagctaagtgagatattgggcagcagcagcaatgccaggcagctttatgaattc
ctacacaatcccatgaatgtggtgccggctcagaaaaacaagtag
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