Labeo rohita (rohu): 127173852
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Entry
127173852 CDS
T09007
Symbol
mgrn1a
Name
(RefSeq) probable E3 ubiquitin-protein ligase MGRN1 isoform X1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04120
Ubiquitin mediated proteolysis
lroh04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127173852 (mgrn1a)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
127173852 (mgrn1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lroh04121
]
127173852 (mgrn1a)
Enzymes [BR:
lroh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127173852 (mgrn1a)
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
127173852 (mgrn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
127173852
NCBI-ProteinID:
XP_050979851
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All DBs
Position
12:18498118..18511922
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AA seq
554 aa
AA seq
DB search
MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFTSHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDSDSTPEDTGDPRVLYSV
EFCFDTDARVAITLYCQAFEEFANGMAIYSPKSPSMVSETVHYKRGINQQFSLPSFKIDF
TKWKPEELNFDLDKGVFPLVVQAIVDDGDDVTGHAHVLLAAFERHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENRNNQETKSTEDENSDNSSECVVCLSDLRDTLILPCRHLCLCNAC
ADTLRYQANNCPICRLPFRALLQIRAVRKKTAATLSPVSFSPVLSQSSDHTEHSNADNIP
PGYEPISLLEALNGVQPVSPSIPSAPLYEEIQFSGEMGDPLNLTGRQQSADTTSMKGKGS
KSPDGSTRSPSSPIQEEEDEERMSELSDAQPQSVLPCSLSPTEATAEGVSSKPGFPNSGS
ESRSLGVSVSEILQDCHSERSSLSRTESDPSADLALPGSSESIESLKSQSTSSSSQPLLC
LPSTLRMEDERLTS
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaatattaagcagaaggattgctggagttgaagacatcgatattcaagccaat
tcggcgtacagatatcccccaaaatcaggaaattatttcaccagccattttttcatggga
ggagaaaagtttgacacaccccatccagagggatatctttttggggaaaatatggatttg
aatttcttaggcaacagacctgtgcagtttccctatgtgaccccagctccacatgagcct
gtgaagacgctgcggagtttggtgaacatcaggaaggattctttacgacttgtcaggtat
aaggacgattctgacagcacaccagaggacacgggagatcccagggttctctacagtgtt
gaattctgctttgatactgatgccagagtggctattacattatactgtcaggcctttgag
gagtttgccaatgggatggcaatatacagccccaagagcccttcaatggtgtctgagacg
gtccattataagagaggaataaatcagcaattttctctgccatcctttaagattgatttc
accaaatggaagcctgaagagctgaactttgatttggacaaaggcgttttccctttggtg
gtccaagctattgtggacgatggagatgatgtcaccgggcatgcacatgttctcttggca
gcttttgaaaggcatgttgatggcagtttctcagtgaagcctttaaaacagaagcaaatt
gtggaccgtgtgagctatctcctgcaggagatttacggcattgaaaaccggaacaatcag
gagacaaagtccacagaggatgagaacagtgacaacagcagcgagtgtgtggtttgttta
tcagacctgcgtgacacgctcattctcccttgcaggcacctgtgtctgtgcaatgcctgt
gctgacacactgcgttaccaggccaacaactgccctatctgcagactgccattcagagcc
ctgctccagattcgagccgtgaggaagaaaacagctgccactctctcaccagtttctttt
agcccagtgctgtcccagagctctgaccatactgagcattcgaatgccgacaacatccct
cctggctatgagcccatctctctgctggaagccctgaatggggtgcaacctgtgtcccct
tcaatcccatcagcacctctttatgaggaaatccagttttctggggagatgggggatccc
cttaacctgactggacggcagcagagcgcagataccacatcgatgaagggaaaaggtagc
aagtcaccagatgggtctacacgttctccatcatcccccatacaggaggaggaagatgag
gagaggatgtctgagctctctgatgcccagcctcagtctgttctgccctgtagtctcagc
cccactgaggccacagcagagggtgtgtcttccaaacctggcttcccaaattcaggttca
gagagcagatcgctgggtgtgtctgtgagcgaaatcctacaggactgccacagtgagcgc
agcagcctgagccggacagaaagcgacccctcggcagatctggcactgcctgggtcatca
gagtccatagaaagcctgaagagtcagagcaccagcagctccagtcagcccctgctctgc
ctccccagcaccctgcgcatggaagatgagcgtctcacttcataa
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