Labeo rohita (rohu): 127173900
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Entry
127173900 CDS
T09007
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
127173900 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127173900 (msh2)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
127173900 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
127173900
NCBI-ProteinID:
XP_050979922
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Position
12:14874894..14883900
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AA seq
936 aa
AA seq
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MAVQPKQNLSMDSASEHGFLNFYFSMPEKPDTTVRVFDRNDYYTVHGKDAVFAAKEVFKT
NGVIKNLGSGSRRLESVVLSKMNFESFVRDLLLVRQYRVEVYKNASKSSKEHDWQISYKA
SPGNLTQFEEILFGSGGGPGEGAAGVVGVRLGTGADGQRVVGVGYVDSTLRKLGLCEFPD
NDQFSNLEALLVQIGPKECVLPGGDAGGDLGKLKQVVQRGGILLTDRKKSEFSTKDIVQD
LNRLLKARKGETVSSAALPEMEKQIAVSCLQAVIKYLELLSDEANFGSFKITTFDLNQYM
RLDNAAVQALNLFQGSSDDATGTHSLAGLLNKCRTPQGQRLINQWIKQPLIDKNKIEERL
DLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSSNLQDCYRVYQAVGQLPSLVLA
LERYSGKHQVLLHAAFISPLNDLISDFSKFQEMIETTLDMNQIEHHEFLVKPSFDPTLSE
LRENMDRLEKAMQAALNSAARELGLEAAKTVKLESNAQIGYFFRVTCKEEKSLRNNKKFT
TLDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIA
QLDAVVSFAVVSHAAPVPYVRPKILEKGSGRLIVKAARHPCVEAQDDVAFIPNDVTFRRG
EEMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIK
GVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLF
ATHFHELTALAQQVPTVRNLHVTALTTDSTLTMLYKVKKGVCDQSFGIHVAELANFPKHV
IANAREKALELEEFQDISRAGEEAGPEAKKRCLEKQEGEKIIEAFLTKVKSMPVEGMSDE
AVKEELRKLKAEVIGQNNNFVNEIVSHSAKVSLTSA
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacaaaatctgtctatggacagtgcatctgaacatggatttctg
aatttttatttttctatgcccgagaaaccggacaccaccgtgagagtatttgatcgaaac
gattactatacggtgcacggaaaagatgcggtttttgcagccaaggaagttttcaagacg
aatggagtcatcaaaaacctgggctcaggcagtaggaggttggagagtgttgtcctcagt
aagatgaactttgagtcatttgtgagggacctgctgctggtcaggcagtacagggtggag
gtttacaagaatgccagtaagagcagcaaagaacatgactggcaaatatcttacaaggca
tctccaggaaacctgacccagtttgaggagattttatttggcagtggtggagggcccggg
gagggagctgctggtgttgtcggggttcgtcttggcaccggagccgacggacagcgtgtt
gtcggcgttggctacgtggacagcaccctcaggaaactcggcctgtgtgaattcccagac
aacgatcagttttccaatcttgaggctcttctagtgcagatcgggcccaaagagtgtgtg
ctccctggaggagatgcaggtggagaccttgggaaactcaaacaggtggtacagcgtggt
ggcattctgctcacagacaggaagaaatcagagttctcaaccaaagacattgtgcaggat
ctgaatcggctactgaaggcccgtaagggagagactgtgtccagtgctgcacttccagag
atggagaaacagattgcagtgtcttgcttacaagcagtcatcaaatacctggagcttctc
tcggatgaggccaattttggttccttcaagataaccacttttgacctcaaccagtacatg
cgcctggacaatgctgctgtccaggctctgaatctcttccagggttcctctgatgatgct
acaggcacacactctctggcaggcctcttaaacaaatgtcgtaccccacaaggacagcgg
ttgatcaaccagtggatcaaacagcctctcattgacaaaaacaagatagaagaaagattg
gatcttgtggagacttttgtggaggactctgagctgaggaagagttgtcaggaggatctt
ctccgccgttttccagacctgaacagaatggcaaagaagttccagcgtcaaagttctaat
ttgcaggactgttacagagtctatcaagctgtggggcaactgccgagtctggtgctggca
ttggagagatacagtgggaaacatcaggtcctcctgcacgcagcattcatctcgcccctc
aacgacctcatctctgacttctctaaatttcaggagatgattgaaaccacactggacatg
aaccagattgaacatcatgagttcctggtgaaaccctcatttgatcccaccttgagtgag
ctcagagagaacatggatcgtttggagaaagccatgcaggctgccttgaacagtgcagct
cgtgaacttgggctggaagcagctaagactgtaaagcttgaatccaacgcacagattggt
tactttttccgtgtcacatgcaaagaagaaaagagtcttcgcaacaacaagaaattcact
actttagatgttcaaaagaacggagtgcgattcactaacagtaagctaagctctttgaat
gaagaatacactaaaagcagagaagagtatgaagaggctcagaacgccatcgtcaaagag
atcatcagcatagctgcaggctatgtggatccagtacagactctgaatgaggtgatagct
caactggatgctgtagtgagctttgctgtggtgtcccatgctgcaccagtgccgtacgtg
aggcctaaaatactagaaaaagggtcaggtagactcattgtgaaggcggcaagacatccc
tgtgttgaagcccaagatgacgttgctttcattcccaatgacgtcaccttcagaaggggc
gaggagatgtttcatatcatcacaggtccaaatatgggtggtaaatcgacatacatccgt
caagtgggtgtgatcgtgctgatggcacagattggctgttttgtaccatgtgatgaggca
gagctgagtgtggtggattgcgtgcttgctcgagtgggtgcgggagacagccagatcaaa
ggagtgtccacttttatggctgagatgctggagacggctgctattcttcgatcagccaca
gaggattccctcatcattattgatgaattgggccgaggcacatccacatacgatggcttt
ggtctggcctgggcaatctcagagtacatcgccacccgcctcaagtccttctgcttgttt
gctactcacttccatgagctgacggcacttgcacagcaggttcccactgtccgtaacctc
cacgtcactgctttgaccacagacagcactctcacaatgctctacaaggtgaaaaagggc
gtttgtgaccagagctttgggattcatgtggcagagcttgctaacttccccaagcatgtg
attgctaatgcacgggagaaggctctggagcttgaggagttccaggatatctccagagcc
ggggaggaagctggacccgaagccaaaaaacgctgcctggagaaacaggagggggagaag
atcatcgaggctttcctgactaaggttaaatcaatgcctgttgaaggcatgtctgatgag
gctgtcaaagaggagctgcgcaaactcaaggcagaggtcatcggacaaaacaataacttt
gtcaatgagatagtgtcacattccgccaaagtcagtctgacttcagcctga
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