Labeo rohita (rohu): 127173943
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Entry
127173943 CDS
T09007
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b isoform X1
KO
K06236
collagen type I alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04518
Integrin signaling
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127173943 (col1a1b)
04518 Integrin signaling
127173943 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127173943 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127173943 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127173943 (col1a1b)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127173943 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
127173943
NCBI-ProteinID:
XP_050980005
LinkDB
All DBs
Position
12:complement(30681438..30702999)
Genome browser
AA seq
1443 aa
AA seq
DB search
MFSFVDIRLGLLLAAAVLVVRGQGEDDISFGSCTLDGQNYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTSDCANPEIPDGECCPICPDEPEPTPPDVGPVGPPGDPGPPGPPGRDGIP
GENGLPGPPGPPGTSGLGGGSFLSQMAYGSEKSSGPALPGPPGPMGPRGSAGPPGSPGPQ
GFTGPPGEPGEPGAPGPLGSRGPPGPPGKNGEDGEAGKAGRPGERGAAGPQGARGFPGTP
GLPGIKGHRGFPGLDGAKGDTGPAGPKGEPGVPGESGVAGVMGPRGLPGERGRPGPPGPA
GARGNDGNTGAAGPPGPTGPAGAPGFPGGAGAKGETGPAGGRGSEGPQGARGEPGNPGPA
GAAGPAGAPGADGAPGAKGSPGAAGIAGAPGFPGARGPAGPPGPSGAPGPKGNNGDPGLQ
GPKGDAGPKGEPGPVGPQGLAGPSGEEGKRGARGEPGGAGPVGPPGARGAPGNRGLPGSD
GAPGPGGAPGERGANGPMGPQGATGESGRSGEPGLPGSKGMTGAPGSPGPDGKAGPSGVP
GQDGRPGPPGPAGSRGAPGVMGFPGPKGADGEAGKAGERGVAGPPGALGAPGKDGDVGAP
GAPGPAGPAGEKGEQGSAGPPGFQGLPGPQGATGETGKPGDQGAPGEAGPSGPSGSRGDR
GFPGERGSPGPAGPTGPRGAPGSAGNDGAKGEPGAAGAPGGVGPAGLQGMPGERGAGGMP
GARGDRGDAGPKGPDGAPGKDGLRGLTGPTGPSGPSGAPGEKGETGAIGPPGLTGPRGAP
GERGEVGPPGPAGFAGPPGANGQPGAKGETGDSGPKGDAGAPGPAGPVGAAGPQGPAGAT
GPKGARGGAGPPGATGFPGAAGRVGPPGPSGAGGPPGPTGVAGKEGQRGARGERGPAGRP
GEAGAAGPPGPSGEKGSVGPDGPAGPAGSPGPPGVIGARGIVGLPGQRGERGFGGLPGPS
GEPGKQGPTGPVGERGPPGPMGPPGLGGAPGEAGREGNAGHDGAPGRDGPPGPKGDRGET
GNSGPPGAPGAPGAPGPVGPSGKTGDRGEAGPAGPAGVSGPAGARGAQGPAGPRGDKGEA
GEAGERGMKGHRGFTGMAGVPGPPGAHGDQGPAGPSGPAGPRGSAGSNGLPGKDGMNGLP
GPVGPPGPRGRSGEMGPAGAPGLPGPPGPPGPAGIGEPFLPMPQGEKGPDPLRGGYRADD
ASVRDRDAEVDTTLKSLSQKIENIRSPEGTQANPARMCRDLRMCHPEWKSGSYWVDPNQG
SPLDAIKVFCNMETGETCVSPSQNTIPMKNWYTSKNIREKKHVWFGESMPNGFQFQYGSD
GSDPEDVNIQLTFMRLMSNEASQNITYHCKNSIAYMDEASGNLKKALLLQGSNDIEIRAE
GNSRFTYRVSEDGCTSHTGTWGKTVIDYKTTKTSRLPIIDIAPMDIGAPDQEFGVEVGPV
CFL
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatatccggttagggctgctgctcgccgcagcggtcctcgttgtg
agaggacaaggagaggatgatatctcattcggtagctgcacattggacggtcagaattac
aacgacaaggatgtatggaaacccgagccctgccagatctgcgtctgcgacagcgggacg
gtcatgtgcgacgaggtgatctgcgaggatacatcagactgtgccaatccagagattccc
gacggagaatgctgccccatctgccccgacgaacctgaacctacacctccagatgtgggt
cctgttggtccacctggagacccaggtcctccagggcctcccggcagagacggtattcct
ggagagaacggactccctggacctcctggtcctcctggaacctctggcctcggtggcgga
tctttcctttcccagatggcttacggcagtgagaaatccagcggccctgctctccccgga
ccacctggccccatgggtccccgtggctccgctggacctccaggttcacctggccctcag
ggattcactggccccccaggcgagcctggtgagcccggtgctcctggtccattgggttct
cgcggtcctcctggccctcctggaaagaatggagaggatggtgaagctggcaaagccggt
cgtcccggtgagcgcggtgccgctgggcctcagggtgctcgtggattcccaggaacccct
ggactccccggcatcaagggacacagaggtttccccggtctagatggagctaagggagac
actggacctgctggacctaagggagagcctggtgttcctggtgagagcggtgttgctggt
gtcatgggtcctcgtggtttgcccggtgagagaggtcgccctggtcctcccggccctgct
ggcgcccgcggtaatgatggcaacactggtgctgctggaccacccggacccactggccct
gctggtgctcctggtttccctggtggtgctggtgctaagggagaaaccggccctgctgga
ggtcgtggttcagagggacctcagggagcccgtggtgagcctggtaaccccggacctgct
ggtgctgccggtcctgctggagctcctggtgctgatggtgcccctggtgccaaaggatct
cctggtgctgctggtattgctggcgctcctggtttcccaggtgcccgtggacccgcggga
ccccctggtccttctggtgctcctggccccaagggaaacaacggtgatcctggtctccaa
ggccctaagggagatgccggtcctaagggagaacctggcccagttggaccccagggtctc
gccggaccttctggtgaggaaggaaagagaggagctcgtggtgagcccggtggtgctgga
cctgtcggaccccctggagcccgtggtgcccctggcaaccgtggtcttcctggtagtgat
ggagctcccggacccgggggcgcccctggtgagcgcggtgctaacggaccaatgggacct
caaggagccaccggagagtctggtcgctcaggagagccaggattgcccggatccaagggt
atgactggtgcccctggaagccctggacctgatggcaaagctggaccttctggtgtacct
ggacaagatggtcgtcccggaccccctggacctgctggatctcgtggtgcccctggtgtg
atgggattccctggtccaaagggagctgatggtgaggctggtaaggctggcgagagaggt
gttgctggacctcccggtgctttgggcgctcctggcaaggatggtgatgttggtgctcct
ggtgctcctggacctgctggcccagctggagagaagggagagcagggatccgctggtcct
cctggattccagggtctgccaggtcctcagggtgctactggtgagactggcaaacctggt
gaccagggagctcctggtgaagctggtccttctggtccttctggttcaagaggtgacaga
ggtttccccggtgagcgcggcagccctggacccgctggcccgaccggtcctcgtggagct
cctggctctgctggtaatgatggtgctaagggagagcctggtgctgcaggagcccctggt
ggcgttggtcccgctggactgcagggtatgcctggagagcgcggcgccggcggtatgcct
ggagccagaggagacagaggtgatgctggacccaagggccccgatggagctcctggtaag
gatggtctgcgtggattgactggccctactggaccttctggaccttctggtgctcctggt
gagaagggagagactggtgctattggacctccaggactgactggtcctcgtggtgcccct
ggtgagcgtggtgaggtcggtcctcccggacctgctggttttgctggacctcctggtgcc
aacggacaacctggtgctaagggagagactggtgacagcggacccaagggtgacgctgga
gctcctggacccgctggacccgtcggagccgctggcccacagggacctgctggtgctact
ggacctaagggtgctcgtggtggtgctggacctcctggtgctactggtttccctggtgct
gctggtagagtcggacccccaggtccttctggtgctggcggaccccccggcccaaccggt
gttgccggcaaagaaggacagagaggtgcccgtggtgagagaggacccgctggtcgccct
ggagaggccggtgccgccggacccccaggaccctccggagagaagggtagcgtcggtccc
gacggccctgctggtcccgctggttctcctggacctcctggtgttattggagcccgtggt
attgttggtcttcccggacaaagaggagagagaggtttcggcggtctccccggaccttct
ggagagccaggaaagcagggacccactgggcctgtaggtgagcgtggacctcctggaccc
atgggacctcctggactgggtggagctcctggtgaggctggacgtgagggtaacgctgga
catgatggcgctcctggccgtgatggtccacctggaccaaagggagatcgtggtgagact
ggcaactctggtcctcctggcgcccctggtgctcctggagctcctggccccgttggtcca
tctggcaagactggtgatcgtggagaggctggtcccgctggtcccgctggtgtttccggt
cctgccggtgctcgtggtgcccaaggtcccgctggtccacgtggagacaagggtgaggct
ggagaggctggagagagaggcatgaagggacaccgtggcttcactggaatggctggagtt
cctggacctcccggagcccatggtgaccaaggacccgccggaccatctggccctgctgga
cctcgtggatctgctggctccaatggcctccctggtaaggatggtatgaatggtttgcct
ggacccgtcggacctcctggaccccgtggtcgctctggagaaatgggacctgctggtgct
cctggtcttcctggacccccaggtcctcctggacccgccggcatcggcgagcccttcctt
cccatgccccagggcgagaagggtccagatcctctgcgcggaggctacagagccgacgac
gctagcgttcgcgaccgcgacgctgaggtggacaccaccctgaaatctctgagccagaag
attgagaacatccgcagccccgaaggaacccaggccaaccccgcccgcatgtgccgcgac
ctcaggatgtgccaccccgaatggaagagcggttcctactgggtggatcccaaccagggc
tctcctctggatgccatcaaggtcttctgcaacatggagactggtgagacctgcgtcagc
ccatctcagaacaccattcccatgaagaactggtacactagcaagaacatcagagagaag
aagcacgtctggttcggagagtccatgcccaatggcttccagttccagtatggcagcgat
ggctctgatccagaggatgttaacatccagctgaccttcatgcgcctgatgtccaacgag
gcctctcagaacatcacctaccactgcaagaacagcatcgcctacatggacgaggcctca
ggcaacctgaagaaggctctgctcctgcagggctccaacgacatcgagatcagagcggag
ggcaacagccgcttcacatacagagtcagcgaggacggctgcacgtcacacactggcaca
tggggcaagacagtcattgactataagacaacgaaaacatctcgtctgccaatcattgat
atcgctcctatggacattggtgctcccgatcaggaattcggcgtagaagttggcccagtc
tgcttcttgtaa
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integrated database retrieval system
