Labeo rohita (rohu): 127173991
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Entry
127173991 CDS
T09007
Symbol
thbs2b
Name
(RefSeq) thrombospondin-2
KO
K04659
thrombospondin 2/3/4/5
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04145
Phagosome
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127173991 (thbs2b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
127173991 (thbs2b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
127173991 (thbs2b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127173991 (thbs2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127173991 (thbs2b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127173991 (thbs2b)
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127173991 (thbs2b)
Membrane trafficking [BR:
lroh04131
]
Endocytosis
Phagocytosis
Opsonins
127173991 (thbs2b)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127173991 (thbs2b)
Exosomal proteins of colorectal cancer cells
127173991 (thbs2b)
Exosomal proteins of bladder cancer cells
127173991 (thbs2b)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127173991 (thbs2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
CFP_C_TSP1
EGF_3
TSP1_CCN
TSP1_ADAMTS
Laminin_G_3
cEGF
EGF
DUF3972
Motif
Other DBs
NCBI-GeneID:
127173991
NCBI-ProteinID:
XP_050980095
LinkDB
All DBs
Position
12:complement(11097230..11127442)
Genome browser
AA seq
1181 aa
AA seq
DB search
MILRRCLRMLALLLLFTFAKSQDAQLEDETVFDLFETSGISRKTIGVKLFKGLDNDAPAY
RFIRFDQLPSVSSTALQKLLLQIQNNEGFILTATLRQDRTSRGTILALEGPGERRQFEVV
SDGRTNSLDLVYWWADGSRNVISFEDVDLSDSQWKNVTLYVHGETATLYIGCGLIDSFIL
DEPFYEHLSATGGRMYVAKGATRESHFRGLLQNVRFIFDTPLEDILESRGCDLANPVEAN
VVSESAELVEVPSSIATNVIGQNTDVPATSSSELMCERSCEELANLFQELKGLRVVVSNL
IDGLQKVTEENTAMKEALNKMQSLSEQTMCWQDGRMFEDKEDWIVDSCTKCTCQEGKVVC
RQITCPPVACANPSFIDGECCPVCLPMDSDDGWSPWSEWTQCTVTCGSGTQQRGRSCDDT
SNTCSGPSIQTRKCSLGKCDRRVRQDGGWSLWSPWSSCSVTCGEGLITRIRHCNAPVPQR
GGKDCEGEGRETQSCHADPCPIDGGWGPWSPWATCSATCGGGLKSRGRECNSPEPQHGGR
KCLGDAIENEVCNRKECPIDGCLSNPCFSGVECITDSDGSWECGPCPNGYRGNGTSCEDV
NECDMVSDLCHKVGGLQQCVNTDPGFHCLPCPPRYKGTQPYGMGVESAKTNKQVCEPYNP
CKDNSHSCHKYAECIFLSHFSDPMYKCECRIGYAGDGIICGEDFDLDGWPNQDLVCGANA
TYHCKKDNCPTLPNSGQEDFDNDGQGDACDKDDDNDEIVDERDNCPLMYNPRQYDYDKDD
VGDRCDNCPYEHNPAQTDTDNNGEGDACSIDMDGDEILNERDNCPLIYNTDQKDTDLDGV
GDQCDNCPLVHNPQQTDTDNDLIGDQCDDNQDIDEDGHQNNMDNCPYIPNANQADHDGDG
KGDACDFDDDNDGIPDDRDNCRLVSNKDQMDSDGDGRGDACENDFDNDKVPDIFDACPEN
SAISVTDFRKFQMVHLDPKGTTQIDPNWVVRNQGKELVQTANSDPGIAVGFDEFAAVDFS
GTFYVNTDRDDDYAGFVFGYQSSRRFYVVMWKQITQTYWEEKPSKAFGISGVSLKVVNST
TGTGENLRNALWHTGNTKQQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGFIRVVVYEGK
QIMADSGPIYDKTFAGGRLGLFVFSQEAVFFSDLKYECRDN
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgattctccgaaggtgtcttcgaatgttggcccttttgcttctgttcaccttcgcaaaa
tctcaagacgcacaactggaagatgaaaccgtttttgacttgtttgaaaccagtgggatc
tcacgcaagactatcggcgtgaagcttttcaaaggtttggacaacgatgctccagcatac
cgcttcatccgtttcgaccagctcccctcggttagctccacagcgctccaaaagctcctt
ttgcagatacaaaacaatgaaggcttcattctcacagccactctgcgccaggaccgcaca
tcccgcggcaccattcttgcactggaaggccctggagagcgcaggcagtttgaagttgtt
tcggatggaagaaccaactctttagatttggtgtactggtgggccgacggctcacgcaat
gtgatctcctttgaggacgtagacctctccgattcacagtggaagaatgtaacactctat
gtgcatggagagacggcaactttgtacattggttgtgggctcattgatagctttatttta
gacgaacctttctatgaacacctgagcgccacaggtggccgtatgtatgtggccaaaggg
gctacacgagaaagccattttaggggcttgctgcagaatgtacgttttatctttgacacc
ccacttgaggacattctggagagcaggggatgtgatcttgcaaacccagtggaggcgaat
gtagtcagcgagagtgcagagttggtggaggttccatcttccattgccaccaatgtgatt
ggccagaatacagatgttccagcaaccagctcctcagaactgatgtgtgaacgttcctgt
gaggaactggccaaccttttccaggagctcaagggtctcagagttgtcgttagcaacctc
atagatggtctgcagaaagtgacagaagaaaacactgcaatgaaggaggcactaaataag
atgcagagtctttcggagcaaactatgtgttggcaagatggccgtatgtttgaggacaaa
gaggactggattgtggatagctgtactaaatgtacctgccaagaaggaaaagttgtttgc
cgtcagatcacttgccctccagtggcatgtgccaatccatccttcatcgatggcgaatgc
tgtccagtttgccttccaatggacagtgatgacggctggtctccatggtcagaatggact
cagtgcacagtcacatgtggaagtggcactcaacagagggggcgctcttgtgatgacaca
agcaatacatgttccggaccctcgattcagacacgcaagtgcagtttgggaaaatgtgac
cgcagagttcgtcaggacggtggctggagcctatggtctccctggtcgtcctgctcagtg
acgtgtggagagggactgatcactcgcatccgtcactgcaatgctcctgttccacaaaga
ggcggaaaagactgtgaaggtgaagggcgagagacacagagctgccacgcagacccctgt
ccaattgacggtggctggggtccatggtctccttgggcaacatgttcagccacatgcgga
gggggcctgaagagtcgtggtagagagtgtaacagtcctgaaccacagcatggaggaagg
aagtgtcttggagacgccattgaaaatgaagtatgcaaccgaaaggagtgtcccattgat
ggatgtctttcgaacccttgcttctccggagtcgagtgtatcacagattctgatggatcc
tgggaatgtggaccctgtcctaatggttatcgtggcaatggaacttcctgtgaagatgtc
aatgagtgcgatatggtatcagatctgtgtcataaggtgggtggcctacagcaatgtgtg
aatacagaccccggattccattgtctcccctgccccccacgctacaaagggactcagccc
tacggcatgggagtggagtcagctaaaaccaacaaacaggtgtgtgaaccctacaacccc
tgcaaggacaacagccacagttgccacaagtatgctgaatgcatcttccttagtcacttc
agtgacccgatgtacaagtgcgagtgccgtattggctacgctggagacggcatcatctgt
ggagaggactttgatctggatggatggcccaaccaggatcttgtgtgtggagcaaatgcc
acctatcactgcaaaaaggacaactgtccaactttacccaactctggtcaggaggacttt
gacaatgatgggcaaggagatgcttgtgataaagatgatgataatgatgaaattgtggat
gaaagggacaactgccccctgatgtataaccccaggcagtacgactatgacaaggatgat
gtcggagaccgttgtgataactgcccatatgaacacaaccctgctcaaaccgatactgac
aacaatggggaaggagacgcctgttctattgatatggatggagatgagattctaaacgag
cgagacaactgccctctcatttacaacaccgaccagaaagacacagatttagatggtgtc
ggagaccagtgtgataactgccccttagttcacaacccacaacagacggatacagataat
gatctaattggagaccagtgtgatgacaaccaggacatagatgaagatggccatcagaat
aatatggataactgcccgtacatacccaatgctaaccaagccgaccacgacggagacggg
aaaggagatgcttgtgattttgatgatgataatgatggcattcctgatgaccgggataac
tgcagactagtttccaacaaggaccaaatggattctgatggtgatggacgtggcgacgcc
tgcgagaatgatttcgacaacgacaaagtcccggatatcttcgacgcgtgcccggaaaac
agtgccatcagtgttacagatttccggaagtttcaaatggttcacctcgaccccaaggga
accacacaaattgatcccaactgggtggtccgaaaccagggtaaagagcttgtgcaaact
gccaactccgaccctggaattgcagtgggctttgatgaattcgccgccgtggatttcagt
gggaccttctatgtgaatacagacagggatgatgactatgcaggttttgtgtttggatac
cagtctagccgacgcttttacgtagttatgtggaaacagatcacgcagacgtactgggaa
gagaagccttcaaaggcgtttggcatctctggtgtctctctgaaggtggtcaactctacc
acaggcactggggaaaatctacgcaatgcattatggcacacaggcaacactaagcaacag
gtgcgcactctgtggcacgacccaaagaatatcggctggaaagactatactgcctaccgc
tggcatctcatccacagaccgaagactggcttcattagagttgttgtgtatgaaggcaag
cagatcatggcagactcaggccccatttatgacaagacgtttgcaggtggaagactcggg
ttatttgttttctcccaagaggctgtcttcttctctgacctcaaatatgaatgcagagat
aattga
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integrated database retrieval system
