Labeo rohita (rohu): 127174131
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Entry
127174131 CDS
T09007
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03430
Mismatch repair
lroh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
127174131 (pms2)
03460 Fanconi anemia pathway
127174131 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127174131 (pms2)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
127174131 (pms2)
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
127174131
NCBI-ProteinID:
XP_050980374
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Position
12:complement(19245924..19252033)
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AA seq
852 aa
AA seq
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MSDSSTGSAGAIKAIDKQSVHQICSGQVVLSLATAVKELVENSIDAGATNVDVKLKDSGT
ELVEVSDNGKGVEEQNFEGLTLKHHTSKLRDFSDLIHVETFGFRGEALSSLCALSDLTVV
TCHESAQIGARLLYDHDGRLTQRVPHPRQHGTTVTLQKLFSTLPVRHKEFQRNIKKEYSK
MIFVLQSYCIISTGVRITCTNQMGQGKRSTVLCTSGSNSMRDNIGAVFGPKQLQSLIPFQ
QISPNESIKEDYGLSGVDVPKDFFIIDGFVSQADHGVGRSATDRQFFFINKRPCDPVKVS
KLVNEVYHMYNRHQYPFVALNITVASDCVDVNVTPDKRQILLQEEKLLLATLKSSLIVMF
ETGVNKISLNHITPAITKLCRPIETSAGSEDREIGSVSEALPDDGPPKTSVNLAGLKAAF
SNHQVPEIGSKQSSHKTACAGPSQKMFSFVSCSKKITDVMRPPSKSNPSFAAVSSIKKST
ACLAKYKSTFDSDAEDSGAANQNSAEDDPEILHTNDSESVLHPSICETDVKAETIDESVD
EKFWSCKPLVPETKSEQHHDRISSPEAKRARHEAEPLKQRCLVDSKNKNASLQLDSPVSM
QKKTVLLQFSLQELSKRIQRLQTQKTENNDQELKYRRFRAKINPGENQSAEDELKKEISK
DMFKHMEIIGQFNLGFIITKLKSDLFIIDQHATDEKYNFEMLQQNTVLKGQRLIVPQSLH
LPAISETVLMENLEIFRKNGFDFLIDEDAQVMQRVKLVSLPTSKNWTFGPSDIEELIFML
SDSPGIMCRPSRVRQMFASRACRKSVMVGTALNTSEMKKLVIHMGEIEQPWNCPHGRPTM
RHLANLDMISHD
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgtcagactcaagcacaggttctgctggagccataaaggcaatagacaagcagtctgtg
catcagatctgctctggacaggtggtgctgagtctggccacagctgtgaaagagctggtg
gagaacagtattgatgctggtgccactaatgttgatgtcaagctaaaagacagtggaaca
gagctggtggaagtttctgataatggaaaaggtgttgaagagcaaaactttgaaggactg
actttaaaacatcacacttctaaactaagagatttttccgacctgatacatgtggagacg
tttggcttccgtggtgaagccctgagctcactttgtgctcttagtgatcttactgttgtg
acctgccatgagagtgctcagattggagctcggctgttgtatgatcatgatggtcgtctc
actcagcgtgtgccgcatccccgccagcatggcactaccgtcactctgcaaaagctcttc
tccacattacctgttcgacacaaggagttccagcgcaacatcaaaaaggaatattccaag
atgattttcgtcttgcagtcctactgcatcatttccactggtgtgcgtattacatgcacc
aaccagatgggacaaggcaagcgctccacagtattgtgcaccagtggcagtaacagcatg
agagacaacattggagctgtgtttggacctaaacagctacaaagcttgattccattccaa
caaatatctcccaatgaatcaattaaggaagactatggtctcagtggggtagatgttccg
aaagactttttcatcattgatgggtttgtgtcacaagcggatcatggtgttggtcgaagt
gctactgacagacagttcttctttatcaataaaagaccctgtgatccagtaaaggtctcc
aagcttgtgaatgaggtgtatcacatgtacaatcggcatcaatacccttttgtcgctcta
aacatcactgttgcttcagactgtgtcgacgtgaatgtgactccagacaaacgtcagatc
ctgctacaagaggagaaactcttgctggcaactctgaaaagctcactcattgttatgttt
gagactggtgtcaataaaatcagtcttaatcacattacgccagcaattaccaagctgtgt
agaccaatcgagacaagtgctggttcagaagatcgggaaataggttctgtctctgaagca
cttccagatgatggacccccaaagacttcagtcaatctagccggacttaaagcagcattt
tcaaaccatcaggttcctgaaattgggtctaagcagtctagccataaaactgcttgtgct
ggtccttctcagaagatgttttcctttgtgagctgctctaaaaaaataacggacgttatg
aggccaccttcaaagtccaatccaagtttcgctgctgtttcttccataaaaaaatcaaca
gcttgtctagctaaatataaaagcacctttgatagtgatgctgaagattctggagctgca
aaccaaaattcagctgaagatgatccagagattctacatacaaatgattcagagtcagtt
ttacaccctagtatatgtgaaactgatgttaaagctgagactattgatgaatctgtagat
gagaagttctggagttgtaaacctttggtgccggagacaaagtcagaacaacaccatgac
agaatttccagtcctgaagctaaaagagctcgacatgaagctgaacctctaaaacaacgc
tgtttggtagactctaaaaacaagaatgcttctctgcagttggattcacctgtcagcatg
cagaagaaaacggtgcttttgcagttttctctgcaggaactttctaaaaggatacagagg
ttacaaactcagaagacagagaacaatgatcaagagctaaaatatagacggttcagggcg
aagattaaccctggtgaaaaccagagtgccgaggacgagcttaagaaagaaataagcaaa
gatatgttcaagcatatggaaatcattggtcagttcaacctgggctttatcatcaccaag
ctgaaatctgaccttttcataattgaccagcatgctacagacgaaaagtacaattttgag
atgctacaacagaatacggtcttaaagggtcagcgactcatagttccacaaagtctccac
ctcccggctatcagtgaaactgtgctcatggaaaaccttgagatcttcagaaagaatggt
tttgacttcctcattgatgaggatgctcaggttatgcagagggtgaagctggtgtcatta
cctacaagcaagaattggacctttggcccaagtgacattgaagaactcatcttcatgctt
agcgacagtcctggaatcatgtgtcgaccttctcgtgtaaggcagatgtttgcatccagg
gcatgtcgcaaatcggtgatggttggcactgccctgaacaccagtgaaatgaagaaactt
gtgattcacatgggggaaattgaacagccctggaattgtccacatggtagacccaccatg
agacacctcgctaatctagatatgatttctcacgactga
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