Labeo rohita (rohu): 127174144
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Entry
127174144 CDS
T09007
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lroh03016
]
127174144 (trub1)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
127174144 (trub1)
Transfer RNA biogenesis [BR:
lroh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
127174144 (trub1)
Prokaryotic type
127174144 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
127174144
NCBI-ProteinID:
XP_050980392
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All DBs
Position
12:11550305..11554779
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AA seq
285 aa
AA seq
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MAVQNSSLSKLQSLNGIFAIYKKQGPTSADVLNTLKKALLKEAGVANPNPRKRKKQALKI
GHGGTLDSNASGVLVVGIGEGTKMLTTMLAGSKKYRAVGELGKATDTLDATGNVVEEKSY
DHITKEAFEEKLKQFTGEIMQVPPLYSALKKDGQRMSVLLKQGHEVEAKPARPVTVYSLS
LQDFNPPHFTLDVECGGGFYVRSLVDDLAKALSSCAHIKELTRTKQGQFTLEEHVLKEDR
WTLTDISQALQPCPKPSRQEKNDKKAKSKHNTQPESEGDDGDQND
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atggctgtacagaacagttcactatccaaactgcagtctttgaatggtatatttgccatt
tataagaaacagggtcccacctccgcagatgtgttaaacacactgaagaaggcgctttta
aaagaggcaggggttgcaaatcccaatcctcgcaaaaggaagaagcaagctttaaaaatt
ggccatggcggcaccctggacagcaatgcttctggtgtacttgtggttggaattggtgaa
ggaacaaagatgctcactacaatgcttgcaggatcaaagaaatacagagctgttggagag
ttaggcaaagcaactgatactcttgacgccacaggaaatgttgttgaagagaagagctat
gatcacatcacaaaagaggcttttgaggagaagctgaagcagtttacgggtgaaattatg
caggttccacctttatattcagcactgaagaaggatggccagcgcatgtctgtcctgctc
aagcaaggccatgaggttgaggctaaacctgcacgtccagtcacagtgtacagcctttcc
ttacaagacttcaatcctccgcatttcaccctagatgttgagtgtggaggtgggttttat
gtcagaagcttggttgatgatcttgcaaaagctctatcatcctgtgctcacatcaaggaa
cttactaggaccaaacagggtcagttcacactggaagagcacgtattgaaggaggatcgc
tggacattgacagacatctcacaggctctgcagccctgcccaaagccatcacggcaagag
aagaatgacaagaaagcaaaatcaaagcataacacccaacctgaaagtgagggtgacgat
ggagatcaaaatgattaa
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