Labeo rohita (rohu): 127174213
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Entry
127174213 CDS
T09007
Symbol
smarcd2
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127174213 (smarcd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127174213 (smarcd2)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127174213 (smarcd2)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127174213 (smarcd2)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127174213 (smarcd2)
PBAF complex
127174213 (smarcd2)
GBAF(ncBAF) complex
127174213 (smarcd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
127174213
NCBI-ProteinID:
XP_050980501
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All DBs
Position
12:23832109..23845128
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AA seq
507 aa
AA seq
DB search
MASRSGLPGFPVNPSTPINPGMNPMNPGHSSAMRMGAMPQNSPYRGMGSTPNQYHQRPSM
SPSRGMPMGGMGSMGSPLPGPSYSGAMPMRPGMPQAAMDPARKRLLQQQQQQPGGLMGPR
RGVKRRKMADKVLPQRIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPITQKR
KLRIYISNTYTPAKPEGEEAEKVASWELRVEGKLLEDPGKQKRKFSSFFKSLVIELDKEL
YGPDNHLVEWHRMPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLDPRLARLLGVH
TQTRASIMQALWLYIKNNKLQDCHEKEYINCNRYFRQIFGCPRMRFSDIPMKLASLLQHP
DPIVINHIISVDPNDQKKTACFDIDVEVDDPLKAQMTSFLSSTTNQQEITALEMKIHETI
ESINQLKTQRDFMLSFSNNPQEFIQDWLKSQSRDLKLMTDTVGNPEEERRTEFYHSPWVK
EAVGRYVFSKVQQRRQELEQVLGIRLT
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggcttctagatcgggtttgccaggttttcccgtaaaccccagcaccccaataaacccc
ggcatgaaccccatgaacccgggtcacagcagcgccatgagaatgggagcgatgcctcag
aattcaccctacagagggatgggcagcaccccgaaccaataccaccaacgcccgagtatg
tcacccagccgaggaatgccaatggggggcatggggtctatgggttcccctctacctggt
ccgtcttatagcggagccatgcctatgcgacccggaatgcctcaagccgcgatggaccct
gcccggaagagactccttcagcagcaacaacagcagcctggaggtcttatgggtccaaga
aggggggtgaagaggcgtaagatggctgacaaagtcctcccacaaaggatcagggatctg
gtcccagagtctcaggcttatatggaccttctggccttcgagagaaagctggaccagacc
attgctcgcaaacgaatggagatacaggaggccatcaaaaagcccattacgcaaaagcgc
aaattgaggatctacatttctaacacctacacgcctgccaagccagaaggggaggaggct
gaaaaagtggcatcctgggaacttcgagtggaaggcaaacttctggaggatcctggaaaa
cagaaacgaaagttttcatcttttttcaaaagcctagtcattgaactggacaaagaactt
tatggcccagacaaccacttggtggagtggcacagaatgcctacaactcaggagacagat
ggatttcaggtgaagagaccaggggatgtgaatgtgaaatgtactctccttctcatgcta
gaccaccagcctccgcagtataagctggatccacgtctggctcggctgttgggcgtccac
actcagacccgagccagtatcatgcaggccctgtggctctacatcaaaaacaacaagctc
caagactgccatgagaaagagtacattaactgcaaccggtacttcagacagatttttggc
tgccccaggatgagattttcagatatccccatgaagcttgccagcctccttcagcacccc
gaccccatcgtcatcaatcatatcatcagtgtggatcccaatgatcagaagaagactgca
tgctttgatatcgatgttgaggtagacgaccctctaaaggctcagatgaccagctttctg
tcatccacaaccaatcagcaggaaattactgccctggagatgaagatccatgagactatt
gaatccatcaaccagttgaagacccagagagacttcatgctcagcttcagtaacaacccg
caggagttcatccaggactggctcaagtctcagagccgagacctcaaattaatgacagac
actgtgggaaatccagaggaggagagaagaactgagttttaccactcaccctgggtcaaa
gaagctgttggacgctatgtattttcaaaggtccagcagaggagacaagaattggaacag
gtactgggaatccgactcacttaa
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