KEGG   Labeo rohita (rohu): 127174470
Entry
127174470         CDS       T09007                                 
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 1 isoform X1
  KO
K17908  autophagy-related protein 18
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh04136  Autophagy - other
lroh04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    127174470
   04136 Autophagy - other
    127174470
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lroh04131]
    127174470
   03029 Mitochondrial biogenesis [BR:lroh03029]
    127174470
Membrane trafficking [BR:lroh04131]
 Autophagy
  Autophagosome formation proteins
   Atg18-Atg2 complex
    127174470
Mitochondrial biogenesis [BR:lroh03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    127174470
SSDB
Motif
Pfam: PROPPIN Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st Beta-prop_EML_2 Beta-prop_WDR5 WD40_CDC20-Fz WD40_WDHD1_1st WD40 BCAS3_WD40 WD40_Prp19 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_Vps41 Beta-prop_WDR3_2nd Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_Aladin EIF3I Beta-prop_WDR35_TULP_N WD40_Gbeta WD40_MABP1-WDR62_1st RMC1_N Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 127174470
NCBI-ProteinID: XP_050980874
LinkDB
Position
12:complement(28923434..28933446)
AA seq 451 aa
MIEPIPEFRTGEKVRRSGSSSPDRERSDGSPKLQRLLCASFNQDTTSLTVGGKNGYRLFS
LSSVDRMDCIHQGVESPDVYIAERLFSSSLMVVVSRSTPFRMNIYHFKKGTEICNYSYSN
NILAVKLNRQRLVVCLEEALYIHNIKDMKLLKSLLNTPPNPKGLCALSVNHSNSYLAYPG
SFTAGEITLYDAMNLNTVTVISAHASHVAAVAFNASGTSLASASEKGTVIRVFSVPDGVK
LFEFRRGMKRYVSISSLSFSADAQFLCASSNTETIHIFKLEHHSPSKESPSWSAYMGKMF
SAASTYLPSQVSDMMHQDRAFATVRLSVAGWRNIAALSTIQKVPRLLVASLDGHLYIYNV
DPQEGGDCHLVEKHRLFDSDDETELEAGNPSYAETVATSTNPDSPSSSSLTGYSEDVGEK
RGELIPEHEFADGPVRLDDEQEFPPVSFQNS
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgatcgaaccaatcccagagttccgaaccggagagaaggtgcgaagatccggctcttct
tccccggacagagagagatctgatggatctccgaaacttcagcgactgctctgcgcttcc
ttcaaccaggacacaacgtctttgactgttggtggtaagaatggctacaggcttttctct
ctgtcctctgttgacagaatggattgcattcatcaaggagttgaaagccctgacgtgtac
atagcagagcggctcttctccagcagtctgatggtggttgtgagcagatcgacacccttt
agaatgaacatctaccattttaagaaaggcacggagatctgtaactacagctactccaac
aacatcctcgctgtcaaactcaaccgacagaggcttgtagtttgtctggaggaggccctg
tacatccataacatcaaggacatgaaacttctcaaatctcttctcaacacaccaccaaac
cccaaaggtctctgtgcactttctgtcaatcattccaactcatatctggcatatcctggg
agcttcaccgctggagaaattactttgtatgatgctatgaatctgaatacggtgaccgtg
atctcggctcacgccagtcatgtggctgccgtcgcatttaatgcttcaggaaccagtctg
gccagcgcttcagaaaaaggcactgttataagagttttcagcgtacctgatggagtcaaa
ctgtttgaattccgcagagggatgaagaggtatgttagcatcagttccctgtcgttcagt
gccgacgcacagtttctctgtgcctccagtaacacagaaaccattcacatctttaaactg
gagcaccacagtcccagtaaggagtctccatcctggtctgcatatatggggaagatgttt
tcagcggccagcacctaccttccctctcaggtgtcagatatgatgcatcaggacagagcg
tttgccactgttcgcctcagtgtggccggttggaggaacatagcggctctttccacgatc
cagaaggttccacgtcttctggtggcctcattagatggtcatctttacatctacaatgta
gatcctcaggaaggaggagactgtcatttagtggagaagcacagactgtttgacagcgat
gatgaaacagaactggaggccggcaatccatcttacgcagaaactgttgccacaagcaca
aatccagactctccatcttctagttccctcacaggttactctgaggatgttggtgagaag
agaggagagctgatccccgaacatgagtttgcggatggacccgtccgtctggacgatgaa
caggagtttcctccggttagctttcagaacagctga

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