Labeo rohita (rohu): 127174924
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Entry
127174924 CDS
T09007
Symbol
btaf1
Name
(RefSeq) TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127174924 (btaf1)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
127174924 (btaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
HEAT_GCN1_C
HEAT_MROH2B_C
Vac14_Fab1_bd
HEAT_GCN1
TPR_Trm732_C
HEAT_2
TOR1L1_N
HEAT_GCN1_C_2
HEAT_EZ
ARM_ECM29
Arm
Motif
Other DBs
NCBI-GeneID:
127174924
NCBI-ProteinID:
XP_050981567
LinkDB
All DBs
Position
13:complement(29373557..29402517)
Genome browser
AA seq
1862 aa
AA seq
DB search
MAVSRLERLFILLDTGTTPVTRKAAAQQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPAPKPKDEVCAEDMSPEDNSSDRLSFYRFDISRLLKHGASLLG
SAGAEFELQDDKSGETDPKERLARQRKQLQKKLGLDMGAAIGMDTEELFNDEDLEDACAS
STNRSQPGKSLGCHFSRNHLPAAELIDSEFRPGMSNRQKNKAKRMAKLVAKQRSRDVDTN
EKSNDSFEGEPEEKRRKTTNVVIEQPATDNKVLIDNVPDNTSLFEETQEWPLESFCDELC
NDLFNPSWEIRHGAGTGLREVLKCHGTGGGKTVGSTAEQMERQHQEWLEDLVIRLLCVFA
LDRFGDFVSDEVVAPVRETCAQTLGVALRHMANSGVAMTVDILLKLLTEDQWEVRHGGLL
GIKYALAVRQDLIAELLPRVLPAITEGLRDLDDDVRAVAAAALIPVVDGLVQLQPAKVPF
IVDTLWNALLELDDLTASTNSIMTLLSSLLTYPQVRQCSAQQSLTVLVPRVWPFLRHTIA
SVRRAALETLFTLLSKADQSCAVWLNPIMQDMLRHIFQSCILESNQEILELIQKAWGELL
RQAPQQYVVAASCPWMGAWLCLMMQASHIPIDPNMLLEVKARLKEKATGKTRQGSVPVKE
TVQEYIGGAETITEDPATRDYVVTRARLMAAKLLGALCSCICDPRLNSSSQELRPAESLA
QLLLFHLNSKSALQRIAVSMVICEWAGLQKECELLSSVVQPRLLVILTEQLYYDEIAIPF
TRMQNECKQLIALMADAHIDVRERINSTVFTIDQANELVTTIFSECTSSLNLKSRQFQPL
DSKRLQARSTVCETSAEWQQLQIRVHTFTACAVVGLAMLPDKLNPVVRPLMEAARREENT
LVQGYAASNIARLLQLCAARSPCPNAKIVKNLCSSVCVDPLLTPSAACPVPPASTPAIQE
SSKASVAEKDAMHHMVNKTKGIITLYRHQKAAFAITSKRGPTPKAPKTTNNDVPLGGSIT
TETDESKKPCLIQRRGAEFCLMTVARHFSKELTQTLPYLWESMTGPLRNALDARGFDSSQ
LLKQGDSVAQELVNSLQVLEVTAGAMSQELIPLLMEQLPLLCACLQHPYTAVRHMAARCV
GVLSKIATMETMNVFLEHVLPWLGAIDDNTKQEGAIEALACVMEQLDVDIVPYIVLLVVP
VLGRMSDPCDSVRFMATQCFATLIRLLPLEAGIPDPPSMSEDLIRQKARERHFLEQLLDG
RKLENYKIPVPIKAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHF
LRAQEYARTKAPDCCPLPSIVVCPPTLTGHWVDEVGKFCSKEYLNPLHYTGPPTERAWLQ
HQVKKHNLVVASYDVVRNDIDFFRDIKFNYCILDEGHVIKNGKTKLSKAIKQLTANYRII
LSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAME
ALHRQVLPFLLRRMKDDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVNVDDVIST
ASMQEEEEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEYKHITEQLNNQHTSLRDI
QHAPKLSALKQLLLDCGLGSAGASDGGTEAVVAQHRILIFCQLKSMLDIVEQDLLKAQLP
TVTYLRLDGSVQAGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNP
MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMTIANTVISQDNASMQSMG
TEQLLNLFTLDKDDKAEKSDAAASSSSGKASMKSVLDGLGDLWDQQQYENEYNLDSFMHS
LK
NT seq
5589 nt
NT seq
+upstream
nt +downstream
nt
atggctgtttcaaggttggaacgtctgtttatcttactggatacaggtacaactcctgtt
acccgtaaagcagctgctcagcagttgggagatgttgttaagcttcacccacacgagctt
aataacctgctatcaaaagttttaacatacttaagaagtccaaattgggatacacgaatc
gcagcgggacaagctgtcgaagccatagtgaagaatattccagaatggaacccagctcca
aagccaaaagacgaggtgtgtgcagaagatatgtctccagaggacaactcctcagacaga
ctgagtttctacaggttcgatatctcccgtctgctcaagcacggagcatcgctgctcggc
tctgcaggtgctgaatttgagctgcaagatgacaagtcaggtgagacagatcccaaagag
cgtttggcccggcagaggaagcagttacaaaagaagttgggattggatatgggtgctgcg
atcggcatggacaccgaggagctttttaatgacgaggacctggaagacgcttgtgcctcc
agtaccaacagatcacagcctggtaaaagcctgggctgtcatttctcacgcaaccatttg
ccggctgcggagctcatagattcagagtttcgtccaggcatgagtaatcgacagaagaac
aaggcaaagaggatggcaaaacttgtggcaaagcagagatccagagacgtggatactaat
gagaagagcaatgacagttttgagggagagccagaggagaagcgccggaaaaccacaaat
gtagtcattgagcagccagcgaccgataacaaagtcttaattgataatgttccggataac
accagtttatttgaggagactcaggaatggcccctggaaagcttctgtgatgaactgtgc
aatgatctcttcaacccatcgtgggagattcgccacggtgccggcacaggattgagggaa
gtgctgaagtgtcacggtactggtggaggaaagactgttgggagtacagcagaacagatg
gagcgacaacaccaggagtggctggaggatttggtcatccggcttttgtgcgtctttgct
ctggacagatttggagactttgtgtcagatgaggtggttgcacctgtcagagagacttgt
gcccagactctgggtgtggccttgaggcacatggcgaacagtggcgttgcaatgactgtg
gacattctgctcaagctgctaactgaagaccagtgggaggttcgacatggaggcctgctg
ggcatcaaatacgctcttgcagtcagacaggatttgatcgcagagctgttgccccgggtt
cttcctgccattacagaaggtctgcgggatctggatgatgatgttcgtgcagtggcagca
gcagctttgatcccagtggtggatggattggttcagttacagcctgctaaggttcccttc
attgtggacacactgtggaatgccctgctggagctggatgatctcacagcttcaacaaac
agcatcatgacccttttgtcctccttgctcacttacccacaggtccgccagtgcagtgcg
caacagtctctcacagtgttggttcctcgagtatggccgttcctgagacacacaatcgct
tctgttcgtcgggctgcactagagaccctctttacattgctttccaaagctgaccagagt
tgtgcagtgtggctgaatcccatcatgcaggacatgttaaggcacatctttcagtcctgc
atcctggagagcaatcaggagatcctagagctcatacagaaggcatggggggagttgttg
cgacaggctccacagcagtatgtggtggcggccagctgtccttggatgggtgcctggctc
tgtttgatgatgcaagcgtcacacatcccaatcgaccccaacatgctgctggaagtaaaa
gcccgcttaaaggagaaggctactggaaagacacgacagggatctgttccagttaaggaa
acggtccaggagtacatcggtggagcggagacgattaccgaagatcctgccacacgagac
tatgtggtgacacgtgcacgtctaatggctgcaaagctgttgggggcgctgtgcagttgt
atatgtgacccacggttgaatagctcttctcaggaactccggcctgcagagtctttagca
caacttttactcttccatctcaattccaaatcggccctgcagcggattgcggtttccatg
gtgatctgtgagtgggcaggccttcagaaggagtgtgagctgctgtccagcgtggttcag
ccccgattactggtcattctcacagagcaactctactatgacgagatcgccattcctttt
actcgcatgcagaatgaatgtaaacagctcatagcgttgatggctgatgcccacattgat
gtgagagaacgaatcaactccactgtattcaccatcgatcaggctaatgagctggtgacc
accatcttctcagaatgcacctcctctctgaacctcaagtcacgtcagttccagccgctg
gacagcaagaggctgcaggctcgttccactgtgtgcgagaccagtgctgagtggcaacag
ctgcagataagagttcacaccttcactgcctgcgctgtggtgggactggccatgctgccg
gataaactcaatcctgttgtcaggcccttaatggaggcggctcgccgtgaagagaataca
ctcgtccagggttatgcagcctccaacattgcccgcctgctgcagttgtgtgctgccaga
tctccctgtccgaatgccaagatcgtgaagaatctctgcagctctgtttgtgtagatcca
ttgctaacccctagtgctgcatgtccggtcccgccagccagcactccagcaatacaagaa
agcagtaaagcatctgtggcagagaaggatgctatgcatcacatggtgaacaagacaaag
ggcatcatcaccctttaccggcatcagaaagcagcttttgcaattaccagtaagagagga
cccacacccaaagcccccaaaactaccaacaatgacgtgcccctcggtggcagcattacc
acagaaacagatgagagcaagaagccatgtcttatccagaggagaggggcagagttctgc
ttaatgacagttgccaggcatttcagtaaggaattgacacaaactttgccatatctgtgg
gagtccatgactggtccgctgaggaatgcactggatgctcggggatttgattccagccag
ttgttaaagcagggagactctgttgctcaggagcttgtgaactctctgcaggtgctggag
gtcacagcgggagccatgtcccaagagctcatccctttactgatggagcagttgcctctc
ctgtgcgcatgtctgcagcatccttacacagccgtacgtcacatggccgcacgctgtgtg
ggtgtgctcagcaagatcgctactatggagaccatgaatgtgttcctggaacatgtgctt
ccctggttgggtgccattgatgacaacaccaagcaggagggagccattgaagccctggcc
tgtgtgatggagcagttagatgtggatattgtgccctacatcgtgctgttggtggtccct
gtgttgggccgtatgagtgacccctgcgacagcgtgagattcatggccacgcagtgcttt
gcaaccctgatccgactgcttcctcttgaggctggaatcccagacccgccgtctatgtct
gaagatctcattcgacagaaggccagagaaaggcacttccttgagcagctgcttgatgga
aggaaactggaaaattataagattcctgtgcccatcaaagcagagctcaggaaataccaa
caggatggagtgaactggctggcatttttgaacaagtacaagcttcatgggatcttgtgt
gatgatatgggtctgggtaagaccttgcaatccatctgtattctggcaggtgatcatttc
ctcagggctcaggaatacgccaggacaaaggctcccgactgttgccctttgccctccata
gtagtgtgtccgcctaccctgacgggacactgggtggatgaggttgggaagttctgctct
aaagagtatctcaatcctctgcactatactggcccccctacggaaagagcatggttgcag
caccaggtgaagaaacacaatctcgttgttgcctcatatgatgttgttaggaatgacatt
gactttttcagggatattaaatttaattactgtatccttgacgagggtcacgtcattaag
aatggaaagaccaaactgtctaaagcaatcaaacagttaactgccaactacagaataatc
ctctcaggaacacccattcagaacaatgttctggagttgtggtctctatttgacttcctg
atgccaggttttcttggtactgagcgtcagtttgctgcccgctacgggaagcccattctc
gctagtcgagatgctaaaagttcgtcacgtgagcaggaagcaggtgtgctggcaatggaa
gcactgcatagacaggttctgcccttcttactgaggagaatgaaggatgatgtgcttcaa
gatctgccacccaagatcatacaagattactattgcaaccttagtcctctacaggttcaa
ctgtacgaggacttcgcaaagtctcgcgcgaaggtgaacgtggatgatgttatttccaca
gcgtctatgcaagaagaggaagagaagcccaaattaaaggccacaggacacgtcttccag
gctctgcagtatctgaggaagctgtgtaatcacccagcgctggtgctgacccctcaacat
ccagagtacaaacacatcacagaacaactgaacaaccagcacaccagcctcagagacatt
cagcacgccccaaaactgtcagccctcaaacagctgctgttggactgtggactgggttct
gccggagcatctgatggtggcacagaggctgtggtggcccagcaccgcattctgatcttc
tgccagctgaagagcatgctggatatcgtggagcaggatctgctcaaagcacagctgccc
acagtcacctacctcaggctggatggaagcgttcaggccggccttagacactccatagtc
tctaggttcaataatgacccgtccatagatgttctgctgctcactacccatgtgggtgga
ctgggtttgaatctgactggagcagataccgtggtgtttgtggagcacgactggaacccc
atgagagacttgcaggccatggatcgagctcacagaataggacagaaacgtgtggtgaat
gtgtatcgtctcatcacacggggaacactggaggagaagatcatgggtctgcagaaattt
aagatgaccattgcaaatacagtcatcagccaagataacgccagtatgcagagcatgggc
acagaacagctgctcaacctcttcacactggacaaggatgataaagcagagaagagcgat
gcagcagcgtcgtcgtcctctggtaaagccagtatgaagtctgttctggacgggctaggt
gacctgtgggaccagcagcagtacgagaacgaatacaacctggacagcttcatgcactcg
cttaaatga
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