Labeo rohita (rohu): 127174936
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Entry
127174936 CDS
T09007
Symbol
rtn1a
Name
(RefSeq) reticulon-1a isoform X1
KO
K20721
reticulon-1
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127174936 (rtn1a)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127174936 (rtn1a)
Membrane trafficking [BR:
lroh04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
127174936 (rtn1a)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
127174936 (rtn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Reticulon
RHD_RETREG1-3
DUF4736
Motif
Other DBs
NCBI-GeneID:
127174936
NCBI-ProteinID:
XP_050981583
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Position
13:complement(22052142..22085236)
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AA seq
808 aa
AA seq
DB search
MSANSSEGPGLDGKWFEEEEEKNGMFGSAGPRFDEMRDDLHSPKQQFHPFEGSGVAMETA
STGDSLSDMFMKSSSGEGDLYTSLLSSKSSSNPFNDGASLFSEGNRSPPAPTGTDSGIGM
TPGDPSDHQTTLQSSHKTDHYSYMDMGDDLCDFGSVGNAKSKQQPPMSGYGDDEDDDEDD
EDDIQDFKPKIHEKESKESSHDPFDLGRYLEKSPLGSEETEVKSQGSAGGQHAFPYVEDP
SDEEMADYRSYRRMETPQSASPVKITVTAESQPERVSPQGGMSERESVLSFGQQGLPTVT
LSEPEDDSAASSANHSPNHSPTGRESPSDVLFQPAGIKSVTPTQDSSNISSHPSIPEVQD
IKSSPKPSSPWAQDLQASGDESGDSEIEQVAEESDSPIHDLTSKTPPAKGGFGQASNPFE
QTSYTSATDKASNPFDKPQTNKVSPSNPFELSGGTKGAFGQSSNPPLYSLLREEREAELD
SDLLIESASEESPKREQEYSAPKPPEISSPLTTSVTSSKPITTTCAMASPFTDPPASTLI
ETEKEKEKEIEKAVPVEKPKPQPEDSWSTKPRPAVMGTSTVTPEQHSSQEKENESKSSVV
SSTTEKEADLSLLIHSINKQKVVDLLHWRDLKQSGLVFGSVLLLLFSLTQFSVVSVIAYL
ALAVLSATISFRVYKSVLQAVQKTDEGHPFKAYLEVEIALSADQISKYVDKTQLYINSTM
KELRRLFLVQDLVDSIKFAVLMWLLTYVGALFNGLTLLILAVVSMFTVPLVYEKYQTQID
QYLGLVRTQVNSIMGKIREKVPGAKKKE
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccaattcgagcgaggggccgggtttggatgggaaatggttcgaggaggaggag
gagaagaacgggatgtttgggagcgcagggccccgtttcgacgagatgcgggacgatctg
cactcgcccaagcaacaattccatccctttgaaggaagcggcgttgccatggaaactgca
tctacaggtgactctctgtctgacatgtttatgaagtcatcctcaggagagggtgatctg
tacacctctctcctttcctcaaagtcctcctccaatcctttcaatgatggtgcctctctc
ttctctgagggtaatcgttccccacctgctcccaccggaactgactccggcattggcatg
accccaggtgacccctcagaccatcaaacaacccttcagagctcacacaagactgaccat
tacagctacatggacatgggggatgacctttgtgatttcggtagtgtgggcaatgccaag
agcaagcagcagcctcctatgtctggctatggagatgacgaagacgatgatgaagatgac
gaagatgacattcaggatttcaaacctaagattcacgaaaaggaaagtaaagaatccagc
catgacccctttgacctgggtcgctacttagagaagagtccacttgggtctgaagagaca
gaggtgaagagtcagggatcggccggtgggcagcacgcatttccatacgtggaggatcct
tcagatgaagagatggcagattaccgatcgtaccgtaggatggaaacgccacagagtgct
agccctgtaaagattactgtcacggcagagtcccagccagagagagtgtctccacaaggg
ggtatgtcagagagggagagcgtgctcagttttggtcagcagggtcttcctacggtaaca
ctgtcagaaccagaggatgacagcgcagcctcctcagctaaccactcccctaaccactcc
cctacaggtcgagagtctccatctgatgtgctgttccagcctgcaggaattaagtctgtc
actcccacccaagattccagcaacatcagctctcatcccagtattcctgaagtccaggac
atcaagagctcacccaaaccctcatccccatgggctcaagaccttcaagccagtggagat
gagtctggagattcagaaattgagcaggtggctgaagaatctgattcgccaatacacgac
ttaacatctaaaaccccacccgcaaaaggtggatttggtcaagcaagcaacccgtttgag
cagaccagctatacatctgctactgataaagctagtaacccatttgacaagccacaaacc
aacaaggtcagtccaagtaacccatttgagctgtctggaggtaccaagggggcctttggt
caatccagcaacccaccactctacagtttgttaagagaggaaagggaggcagagcttgac
agcgacctgctaatcgaatcagcttctgaggagagtcccaagagggagcaggaatattct
gccccaaaacctcctgaaatatcttcccccctgaccacaagcgtcacgtcttctaagccc
atcacgactacctgtgccatggcctctcccttcaccgaccccccagctagcaccttgata
gaaacagagaaagaaaaagagaaggaaatagagaaagcagtacctgttgagaagcccaag
ccgcaaccagaggacagctggtccaccaaacccaggcctgcagtgatgggaacgtctaca
gtgactccagagcagcattccagtcaggagaaggagaatgaaagcaaaagcagtgttgtg
agttccaccacagagaaagaggctgatctgtccttgctcatccatagcatcaacaaacag
aaagtggtagatctgttacattggcgggatttgaagcagtctggactggtgtttggcagc
gtcttgctgctgctgttctctttaacccagttcagcgtggtgagtgttatagcgtacctc
gctctggctgtcctctccgcaaccatcagtttccgagtctacaaatcagtcctgcaggca
gtgcaaaaaaccgatgagggccaccccttcaaggcctatctggaggtggagatcgctctc
tctgcagatcagatcagtaagtatgtggataagactcagctgtacatcaactcaaccatg
aaggagctccgcaggctgttcctggttcaagatctggtcgactccataaagtttgcagtg
ttgatgtggttgttgacctatgttggagctctgtttaatggcctgaccttgttgattctg
gctgtggtttccatgtttactgtgccattggtttacgagaaataccagacacagattgat
caatacttaggactggtgcgcacccaggttaactcgataatgggaaaaattagagaaaag
gttcctggggccaaaaagaaggaataa
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