Labeo rohita (rohu): 127175022
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Entry
127175022 CDS
T09007
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b isoform X1
KO
K08131
collagen type IX alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127175022 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127175022 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127175022 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lroh00535
]
127175022 (col9a1b)
Proteoglycans [BR:
lroh00535
]
Extracellular matrix (ECM) proteoglycans
Others
127175022 (col9a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
127175022
NCBI-ProteinID:
XP_050981781
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Position
13:complement(27348041..27379938)
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AA seq
922 aa
AA seq
DB search
MIWREVCLYLLCNVFKLCFSTGLHAHIMPFSSMSHLQTDQTLCPQTKDGNGLFPGFYIMT
QFNIAELARRGTVKKVPGTTSQHTAYKIGPEFNFRINTRSAFPMGLPEELAFSATYRMSG
NTPNKSWNLWQMQDLNGNEQLAVRLNGEALSVEFSYRTQENRLMTALFPYQTLLFNSQWH
KILLLVKKGSVSLITDCTATDSQQLAPRGQVNLDGFTHIGKLKDNSAIAVPFELQSMLIH
CNLNIPQRDTCGDLPARREISEAEFQRAGAGPPGPPGVPGIDGIAGERGDPGEEGSAGPD
GDPGKPGSAGLPGLPGADGLTGPIGEPGLDGPQGQKGEPGKPGPRGEAGIGPDGAIGPPG
PGGLPGELGKVGPPGAMGVRGPQGPRGPTGPRGAAGMLGGSMELCPNACPAGAPGHPGLP
GMKGHKGVKGEVGEPGKQGHKGEEGDQGAPGEVGAQGPTGPQGIRGATGMIGSKGEMGSR
GVDGDPGPQGVAGATGDQGQRGVVGEAGPKGEQGPQGPRGNTGLPGPKGDGGLPGVDGRE
GIPGMPGAKGAGGKPGSPGEVGLQGIPGLPGSPGPKGGAGEKGSSGQPGLIGTMGSAGKP
GERGEQGEVGPIGPIGQPGDRGEQGPPGPMGKHGARGPKGDLGLPGLPGPPGLPGIKGDR
GEAGEPGPKGEQGAQGDEGTSGDKGEVGDSGQTGAKGEVGNQGDPGNRGPEGARGQPGIE
GPPGSPGPRGMQGNRGAPGPRGTQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPES
GAVGLPGRAGPPGPPGPPGDSGFPGHAGARGLPGLKGPPGLLGLKGPKGEMGDRGDRGPT
VRGPKGMPGPPGLPGEPGKPGYGQDGRDGERGPPGASGQPGVPGPPGSAGPPGYCDPSAC
NLSAGAVHQSLKDSSMKGPGGN
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgatctggagggaagtttgtctctacctgttgtgtaatgtattcaaactatgcttttcc
actggtcttcatgcacacatcatgccattttccagtatgagtcacctgcagacggaccaa
actctctgtcctcagactaaagatgggaatggcttatttccaggattttacataatgact
cagttcaacattgctgagttggccaggagagggacggtgaagaaggtgcctggaacaaca
tctcagcatactgcatataagattggccctgagttcaactttaggataaacaccagatct
gcgtttcccatggggcttcctgaggaacttgcattttctgcaacctatcgaatgagtgga
aatacaccaaataagagttggaatttgtggcaaatgcaagacctgaatggaaatgaacag
cttgcagtcagactcaacggagaggccctgtctgtggagttttcctacagaacccaagag
aatagactgatgacagctttattcccttaccaaacactcctcttcaattctcagtggcac
aagattttattgcttgtcaaaaaaggttctgtgagcctgataacagactgtacagcaaca
gattcacagcagctggcacccagaggacaagtaaacctagatggattcacgcatattgga
aaactgaaggacaattcagcaatagctgtgccgtttgagcttcagtcaatgctgatccac
tgtaacttaaacatcccgcagagagacacatgtggtgaccttcctgcaaggagagagata
tccgaggcagagtttcagagggctggagccggccctccaggtcctccaggtgtgcctggg
atagatggcattgctggcgagagaggtgaccccggtgaagagggttcggctggtcctgat
ggagatcctggaaaacctggttctgctggacttcctggattgcctggagctgatggattg
actggccccataggagaaccaggcctcgatggcccccaaggacaaaagggagaacctggc
aaacctggaccaagaggagaggcgggtattggacctgatggagcaattggaccaccagga
ccaggaggacttccgggtgagctgggaaaagtgggaccccctggagccatgggtgtgaga
gggccgcagggaccccgtggaccaacaggcccccgtggtgctgccgggatgctgggcgga
tcaatggaactgtgccctaatgcatgcccagctggtgctcctggtcatcctggcttgcct
ggaatgaagggtcataaaggggtgaaaggagaagttggagagcctggtaaacaaggacac
aagggagaagagggagatcagggggcacctggagaggttggagctcaaggcccaactgga
ccgcagggaattcgaggtgccactggtatgattggctccaaaggagaaatggggtctcga
ggtgttgatggagacccaggtcctcagggtgttgcaggggccacgggggatcaaggccaa
agaggagtagtgggagaagctggccctaaaggcgaacagggacctcaagggccaagaggc
aatactggtcttccagggccaaagggagatggtggtttgccaggtgtggatggacgtgag
ggaatcccaggcatgccaggtgcaaagggtgctggtggaaaacctggaagccctggggaa
gttggccttcaaggaattcctggtttaccaggaagcccaggaccaaaaggtggagctgga
gagaagggtagttcaggacaaccaggcctcattggtactatgggatctgcaggtaaaccg
ggtgagcgtggagaacaaggagaagtcggacccattgggcctattggacagcctggagac
cgaggagagcaggggccacctggaccgatgggaaaacacggagccagaggtcctaaaggt
gacttgggcttgcctggacttcctggaccaccgggcctgccaggaataaaaggtgatagg
ggtgaagcaggcgaacctggaccaaagggagaacagggagctcaaggtgacgagggaaca
tcaggagacaaaggagaagttggtgactctggccaaactggagctaaaggcgaagttggt
aaccagggggatccgggtaacagaggaccagagggtgcccgtgggcagcctggcattgag
gggcctcctggtagccctggaccacgtggcatgcaggggaacagaggagctccaggacct
cgtggcacccagggaccagcgggtaaagaaccaagcgatcaacacatcagacaagtgtgc
atgcgcgttatgcaggagcagctggcccagttggctgccagtctgaggagaccagagtct
ggcgcagtcggattgccaggcagagccggtccccccggtcctcccggacccccaggtgac
agcggctttcctgggcatgctggtgcaagaggacttccgggactcaaagggcctccggga
cttctgggtctcaaaggcccgaaaggcgagatgggagacagaggggacaggggacctaca
gtccgtggacccaaaggaatgccgggacctcctggactaccaggtgaacctggaaaacca
ggatacggtcaagatgggcgtgatggagaacggggtccacctggtgcctcgggtcagccg
ggcgttcccggacctcctggttcagctggaccacccggttactgcgatccttcggcctgt
aatctgagcgcaggtgccgtccatcagtctctcaaagactctagcatgaaaggaccaggc
ggaaactaa
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