Labeo rohita (rohu): 127175113
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Entry
127175113 CDS
T09007
Symbol
mnat1
Name
(RefSeq) CDK-activating kinase assembly factor MAT1
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03022
Basal transcription factors
lroh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127175113 (mnat1)
09124 Replication and repair
03420 Nucleotide excision repair
127175113 (mnat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127175113 (mnat1)
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127175113 (mnat1)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127175113 (mnat1)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127175113 (mnat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-RING_UBOX
TRAF3_RING
zf-UDP
zf-C3HC4
zf-RING_2
zf-P11
TRAF6_Z2
DUF604
Motif
Other DBs
NCBI-GeneID:
127175113
NCBI-ProteinID:
XP_050981938
LinkDB
All DBs
Position
13:22204820..22232422
Genome browser
AA seq
309 aa
AA seq
DB search
MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVEMLFVRGSGNCVQCNTPLRKSNFRV
QLFEDPAIDKEVEIRKKVLKIYNKRELDFSTLKEYNDYLEQVEDIVFNLTNNVDVERTKQ
IMEQYQRDNKDVIQRNKAKLTREQEELEELLLQEQQNSEQRRLETLQEEQRQLQAKRKNK
QALLDELESSKLPAAVLLAQHKDRAAQLETQIEKQKQNVKPANIFSTGIMMGQTVSFASV
SRVEEVLYVYQPLFIDTYGPPVPELDQLGRLGYLNHVRTASPQDHAGGYTSGLACHRALQ
DAFSGLFPS
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcagggatgcccgaggtgcaagacgaccaaatacagaaacccatctctgaag
ctgatggtgaatgtgtgtggacacacgctgtgtgagagctgtgtggagatgctgtttgtc
cgtggctcaggtaactgtgtgcagtgtaacactcctctcagaaagagtaacttccgcgtg
cagctcttcgaagatccagccatcgataaagaggtggagatccgcaagaaggttctcaaa
atctataataagagggaattagatttttccactctaaaagaatataatgactacctggag
caagtggaggacattgtgtttaacctgacaaataatgtagatgttgaaaggaccaagcag
ataatggaacagtatcagcgagataacaaagacgttatacagagaaacaaagccaaactg
acacgtgagcaggaggagttggaggagctgttgttacaggagcagcagaattcagagcag
aggagactggagaccctgcaggaagaacagagacaactacaggccaaacggaaaaacaaa
caggcccttttggatgaactggaaagttccaagttacctgcggctgtgctgttggcccaa
cataaagatcgagccgcccaactggagacccagatagaaaaacagaagcaaaatgtcaag
ccagcaaacatcttctctactggaataatgatgggtcagactgtgtctttcgcttctgtg
tctcgtgtggaggaagtgttgtacgtctatcagcctctgttcattgacacatacgggccg
cccgttccggaactggatcagttgggccgattagggtatctgaatcatgtgcgcacagcg
tctccgcaggatcatgctggtggttacacatcaggactggcatgtcatcgtgccctccag
gatgctttcagtggcctcttcccctcatga
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