Labeo rohita (rohu): 127175132
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Entry
127175132 CDS
T09007
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lroh03009
]
127175132 (ddx21)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127175132 (ddx21)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127175132 (ddx21)
Ribosome biogenesis [BR:
lroh03009
]
Eukaryotic type
Pre-60S particles
Helicases
127175132 (ddx21)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
127175132 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
DD_DDX21-DDX50
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
127175132
NCBI-ProteinID:
XP_050981984
LinkDB
All DBs
Position
13:complement(358182..372068)
Genome browser
AA seq
716 aa
AA seq
DB search
MSICPTTSKMPSKILAEAEDSILMEDVENGLQLLKKKKKKSKEKLMAEAEECDSPPPKKR
KAEKMLIESPDMNENTDTIQMKVKKKKKTIVEDVMGNGVTDKTYIPAVVDTPAPSSEDSD
SDQDKETPEQKEGAFSNFRISQNTINLLQARGVTYLFDIQVKTFNSVYDGKDLIGQARTG
TGKTFSFAIPLVEKLQSETDDRKRGRCPKVLVLAPTRELAIQVAKDFKDITRKLSVTCFY
GGSSYNPQIDAIRNGIDILVGTPGRIRDHLQNNKLDLSQLKHVVLDEVDQMLDMGFAEQV
EEILSVSYKKDAVEKPQTLLFSATCPSWVYDVAKKYMRSQFIHVDLIGKKTQRAATTVEH
LAITSHWSQRASVIGDVIQVYSGSHGRTIVFCETKKEATELSMNSSIKQNAQVLHGDIPQ
KQREITLKGFRNGTFEVLVATNVAARGLDIPEVDLVIQCSPPNDVESYIHRSGRTGRAGR
TGICICFYQRKEENQLKFVEHKAGITFKRVGVPTANDIIQSSSKDAMRFLDLVPAEAVGY
FREAANELIEKRGAVEALAAALAHISGATTLEQRSLISSEAGFTTMILNCSQEMHNIGYA
WRGLKEQLGEEIDEHIKRMTFLKGKMGVCFDIPINKVKEIQDQWQDGRRWQLSVATELPE
LEQSMRQSGERTSGGFGGRGGGRGRRSFGFKGNNSSGGRRGQGGAQKRNFRQTFDY
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtctatctgccccacaacatctaaaatgccgtctaagatcctggccgaagccgaagac
agcatactcatggaggacgtggagaacggtctgcagctgctgaagaaaaagaagaagaaa
tcaaaagaaaagctgatggcagaggcagaagagtgtgattcaccacctcctaaaaagagg
aaggctgagaagatgctgatcgagtctccagacatgaacgagaacacggacacaatccag
atgaaggtgaaaaagaagaaaaagacaattgtggaggacgtgatgggcaacggagtgact
gataaaacatacataccagctgtagtagacacaccggcaccgtccagcgaggactcagac
agcgaccaggacaaagaaacaccagagcaaaaagaaggagccttttccaacttcaggatc
tcccagaacaccatcaacctgctgcaggcccgtggtgttacgtacctctttgacattcaa
gtgaagacctttaactctgtgtatgatgggaaagatctcattggtcaggcgagaaccggc
acaggaaagaccttttcgttcgctattcctctggtggaaaagctgcagtcggaaacggac
gacaggaaaagaggccgatgcccgaaggtgttggttctggcaccgactcgtgagctcgcc
attcaggtggccaaagacttcaaagacatcacccggaaactgtctgttacatgcttctat
ggaggaagttcatacaacccacaaatcgacgccatccgcaatggcatcgacatactggtg
ggaacgccgggtcgaatcagagaccatctgcagaataacaagctggatctgtctcagctc
aaacacgtggtgctggacgaggtggaccagatgctggacatgggctttgctgagcaggtg
gaggagatcctctctgtgtcttacaagaaagatgccgtggagaaaccacagacgctgctg
ttctcagcgacgtgtccttcctgggtttatgacgtggctaagaaatacatgcgctctcag
ttcatccatgtggatctgatcgggaaaaagacccagagagccgccaccacagtcgagcac
ttggcgatcacgagtcactggtctcagcgggcgtccgtcatcggtgacgtcattcaggtg
tacagcggcagccacggccggaccatcgtcttctgcgagaccaagaaagaggccactgag
ctctccatgaactcatccatcaaacagaacgcgcaggtgctgcacggagacattcctcag
aaacagagagagatcactctcaagggcttcaggaacggcacatttgaggtgttggtggcc
accaacgtggcggcccgcggcctggacatcccagaggtggacctggtcattcagtgctct
cctccaaacgatgtggaatcatatatccaccgatccggaaggactggcagagccggaaga
acaggcatttgcatttgtttctaccagcgcaaggaggagaaccagctcaagtttgtggag
cataaagcgggaatcaccttcaaacgggtcggggtcccaacagcgaacgacatcatccag
tcctccagtaaagatgccatgaggtttttggacttagttccagcagaggcggtgggttat
ttccgtgaggccgcgaacgaactgatcgagaagcgcggggcggtggaggcgctggcggcg
gctctcgctcacatatcgggagccaccaccctggagcagagatctctcatcagctcagaa
gctggattcaccacaatgatactgaactgctctcaagaaatgcacaacataggttacgcc
tggcgcggactgaaggagcagctcggggaggaaattgatgagcacatcaaacgaatgacc
ttcctcaagggcaagatgggtgtgtgtttcgacatccccatcaacaaagtgaaagagatc
caggaccaatggcaggacggccgccgctggcagctgagcgtggccacagagctccccgag
ctggagcagagcatgcgtcagagcggcgagcgcacgtccggcggattcgggggccgcggc
ggtggacgaggacgccgctcatttggcttcaaaggcaataacagttccggtggcagaaga
ggacaaggaggcgctcagaaacgcaacttcagacagacctttgattactga
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