Labeo rohita (rohu): 127175221
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Entry
127175221 CDS
T09007
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127175221
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127175221
09142 Cell motility
04820 Cytoskeleton in muscle cells
127175221
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127175221
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127175221
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127175221
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127175221
Hyaluronan
Extracellular matrix or blood plasma proteins
127175221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_CoxE
PT
Glycos_transf_2
DUF6110
Motif
Other DBs
NCBI-GeneID:
127175221
NCBI-ProteinID:
XP_050982117
LinkDB
All DBs
Position
13:31676614..31725463
Genome browser
AA seq
2837 aa
AA seq
DB search
MEIVVLRSGLLSFYEQFQIFSSSFRVFVVGLIPSMPGLCGTRNSSMEKEWGLLGFLLLSI
CFLVSNGQNIVCTQEMADIVFLVDGSSSIGMENFKEVRQFISSLVDSFDVAPDKVRIGLV
QYSDAPQTEFLLNTYQNKQEILSYIRNLRYKTGGRFTGQGLEFMLNQHFVEKAGSRAQQN
VPQIAIVITDGDSLDEAESKAVELRQRQIKLFAIGIKDANEMLLRQIASEPYDQHVYSVT
DFAALRGISQSVTQKVCTTVEETQKEVIQTARDCNETAQADIVLLVDTSGSIGVSDFEEM
RKFLHSFVDGFNLEPDKVRVGLAQFSDKPYQEFLLGDYFDKNDLRRKLNNLIHYGGGTNI
GLALTFIREKYFSLARQNVPGIAIVITDGNSNDNVEEPSQSLRKLGVSIFVIRVGKGNME
KSHAIANTPHEEFLFGINSYQELQALKESLRNKVCFTVTLQSQAFVPKFADLFILVDSSA
SRQQEQTIRNFLRGLILQLNVGKNANRVGLAQFGENVKEEFLLNTDKSKNEILSSIRSMT
LRFTGERRIGNAIEYAHKNFLTSAAGSRVSEGFKQFLLVIAAGESADGVVQASRQFQKNA
VTVLTAGLGRADEHEHEMECISSPWTNYKLVGNIQQVQQKIKIAIDTWKDAPVSEECMFD
VVADIAFIIDQSSSIKSKNFQIVRDFLMNTIRGLDMSKGNIKIAVVLYSDYPRADVHFNT
FSYKTDVLRYVSSMPYGRGNTYTGAALEFAKNQVFIKARGSRRDQQVQQIAVVITDGKSM
DDVAPAATELRKSGVTVFAVGIKDTKEDELREIASYPHEKFVLSVENFDRLNILSHILTK
TLCNEITNSIIPHRDSHDFGCMQTTKAEIYFLLDESGSILSQEFEDMKNFTRQWLDAFEV
GRNHVRFGLVKFADSATTVFRLNKHNTKAEIRQAVNDLIVMGGGTRTDLGLXEMIPLFEE
AEQTRGEKVRKLLIVLTDGESRNTAEPVEVPAKLLRIEQNVTIYAIGVKNASVPELELIA
GSPKRTFYVKNFDFLNEIKKSIITEICFFEGCEGLFADVVFLLDGSESVDAQDFKKMKEM
MELIIDKFAIGPDKERVAVVQYGTDTNEEFSLNTFDNKATMFEKIRNIKQMNGKTNTGKA
LSKVLQYFENDNGGRVDALKFLIVLTDGESRDDVAKPAKTLRESLINVNAIGMRHANRSQ
ILAIAGSHDGVFFEDAVASLKELTTQVLHKICHTECKTPELVDIIFLVDASGSPNKDGFQ
EMKHLIKHTVSKSVVGEKQVRFGVVTYSNIPRLEFTLKQYYSQDDVLSVISNLKASGGTR
NTARALIDTLSYFDKKHGGRRAKNISQVLFLITDGKVNDLSGLAKWRESLAKSEVNFFPI
GTEDADAEQLKEMVGNKGKVLFANTYKDLHKLHKRVTQELCNLTKPICETEQSDLVFLID
GSESIDEKGWNTIKKTMIEVVKVLNITQDNWRVGVAQFSNILLHQFYLNTYTDLTELAEA
INKIVQWKQGTDIWNALRNVRYYFTRENGSRIDEGIAQNLLLITDGKSDDKKDSNALAFF
RNNEIKITAIGVGKEKDINKFMLLNITGSPDRVLIETIEGLILKKTIKKIINSLCPKKHP
TKDCNIDIAFGFDVSRQANTQSLLRPQEERLVTAAIHRISMMGDLCCVTKDKITTRFGYR
LVSGQDGSVLDDFEFGNYSEDVVKKVMLLRPKATLAFNEFLLDSFRELFKSSKAKAKVLI
IFTDGLDENIQRLKESSEKLRKSGVSALLIVSLXGIIDVQELEFGRGFGYMQPLTINMLN
LGNALMKQIETVALRECCNMSCSCTGVPGPPGHPGLPGQKGNTGQKGHPGYPGDEGVEGD
RGPPGLNGTQGHNGCRGNRGIKGQRGYTGNKGEHGEDGVDGVDGEQGDAGLNGLPGPKGD
LGRAGMKGFRGSPGPKGDIGLRGDPGAPGIDNRIPGPKGEKGDTGLPGDQGLIGPPGRPG
DNGDPGVPGRKGPPGLPGQSSNQKGEAGQPGSPGYPGQVGPPGTKGSKGGNGPPGVPGIQ
GPFGRPGSEGSKGGRGQRGQRGTPGDPGPKGALGPEGFRGPLGQDGRDGYGPAGPKGHRG
STGYFGLPGLQGEDGTKGSSGSKGHKGYRGRPGNAGTRGSQGTPGENGMDGHRGEKGPPG
ISPMPECDLVDYIRKNCPCCSDNGTQCPVHPTDLVIALDMSAGVTPQVFERMRSAALSLL
EDISIAETNCPWGTRVSVISYSSESKNLIRFADHLKKKILLETIRAFALERTTKTRDIGQ
AMSFVARNIFKRSRKGRLMRKVAVFFTNGPSRDELSLATAMLEFKAADIGLGVIALNPAD
DVRRAMQVDDTRSYIIVDGRGVNRIKRCIICFDRCNPDPVCSVILPPPPLLMDLDLSVLL
DSSDKLKTQQYVSAKELLLSLLDHIDVSNEPSRADGKTRVSVYQQSSIYGNSYMNEEFSF
TKFKDRNIMKRHITNTVKQVGGISNPEFALERLITDVILKAERPRSKRMVMAVFCEDSKY
NKAQLEYLSRLCRCQNVVMFILMAGQRFDWTQMEELINSRLEQHLVFLDDRDYGVRYTYA
FLNMLRRGILPRLSLQPRDCVGFVPRPSGPGPQPPDIDILPTEVPTEVPTEEPTEEPTEE
PTEEPTTTEYPPYEYSVMTKNHSWNLMILNDLQKSTKRSKPSPRRLNMYSVAQGNTGMYC
LFPTARCFLEKDVGRVCGSYLSRWYYSQETKKCMHFWYGGCDGNENRFLTEDECAMECVS
TEFENLPKDDSSIKDICELNLDAGLCSNFTVKWYFNTRSGQCILFWYGGCEGNGNRFNTQ
EDCELRCLRAKKVSPNI
NT seq
8514 nt
NT seq
+upstream
nt +downstream
nt
atggaaattgtagtgttgaggagtggcttgttgagtttctatgaacagtttcagattttt
agttcttcattcagagtcttcgtggttggactcatcccatccatgcctgggctctgtgga
acaaggaactcaagcatggagaaggagtggggattacttggcttcctccttctgtcaata
tgttttcttgtcagcaatggccaaaacattgtctgtacacaggagatggctgacattgta
ttcctggtggatggctctagcagtatcgggatggaaaacttcaaagaagtcagacaattc
atctcctcgctcgtagacagctttgatgttgctcctgacaaggtcaggatcggtctggtc
cagtacagtgatgcaccgcaaactgagtttttgctcaacacttaccagaacaaacaggaa
attctcagctacattcgaaatctgcgttataaaaccggtgggaggtttactggccagggt
ttggagttcatgctgaatcaacactttgtggaaaaggccggaagtcgagcgcagcagaat
gttccacagattgccattgttatcacagatggtgattctctagatgaggctgagtcaaag
gctgtagagctgaggcaaaggcaaatcaaattatttgccatagggatcaaagatgcaaac
gagatgttgctgagacagatcgcgagcgagccgtacgatcagcatgtctacagcgtaaca
gactttgcagcactgcggggaatctctcagagtgtaactcagaaggtgtgtaccactgta
gaggaaacgcaaaaagaggtcatccagacggcaagagactgcaacgaaactgctcaggca
gacattgtgctccttgtggacacatctggtagcattggagtgagtgattttgaagaaatg
aggaagttcctgcattcttttgtggacggatttaatctagaacccgacaaggtgagggtg
ggacttgcccagttcagtgataaaccataccaagagttcctgcttggtgactatttcgat
aagaatgacctacgccgaaagttgaataatctcatccattatggaggaggcaccaacatt
ggtctggccctgactttcatccgtgagaaatactttagtctggccagacaaaatgttcct
ggcattgccatagtcatcacagatgggaattcaaatgataatgtggaggaaccttcccag
agtctacgaaaattaggagtttccatctttgtcatcagggtgggaaagggcaacatggaa
aaatcgcatgccattgctaataccccacatgaggagttcttattcggtatcaacagttat
caagaactgcaagctctaaaagagagtctacgcaacaaagtttgctttactgtgacactc
cagtcacaagcttttgtgccaaaatttgctgatctcttcatattggttgatagctcagca
tctagacagcaagagcaaacaataaggaattttctccgaggactgatcttgcagctcaac
gtgggaaagaatgctaatcgtgtcggccttgctcagttcggtgaaaatgtcaaagaggag
ttcctgctaaatactgacaagtccaagaatgagattttgtcatctattcgcagtatgaca
ctgaggtttacaggggagcgacgaattggcaatgcaattgaatatgctcacaaaaatttc
ttaactagtgccgctggaagccgtgtctcggaagggtttaagcagtttctgctggtcatt
gcagctggagaatctgcagatggtgtcgtccaagcatcccgccaattccaaaaaaatgca
gtgactgttttaactgctggcttgggcagagctgatgaacatgaacatgaaatggagtgc
atttctagtccatggacaaactacaagttagtaggtaacatccaacaagtgcaacagaaa
attaagattgccattgacacatggaaagatgctcctgtttcagaagagtgcatgtttgac
gtggtggccgatatcgcttttattattgaccagtccagcagtatcaaatccaaaaacttc
caaattgtgcgtgattttctcatgaacaccatcagaggtctcgacatgagtaagggaaac
attaaaatagctgtggtcctctatagtgactaccctcgagctgatgtgcacttcaacacc
ttcagttataagactgatgtcctgcgctacgtcagtagcatgccatatggtcgtggtaat
acatacactggagctgctctcgagtttgccaaaaaccaggtgtttatcaaagcaagaggc
agcagaagagatcagcaggttcagcagattgctgttgttatcactgatgggaagtcaatg
gatgatgtggccccagctgcgacagaattgcggaaatctggcgtcactgtttttgcggtc
ggtatcaaagacaccaaggaggatgaattgagagagatcgcatcctacccacatgaaaag
tttgtactgagtgtggagaactttgatagactaaatatactttcacatattttaaccaaa
acactttgcaatgaaatcacaaattccattataccccacagagactcacatgactttggt
tgcatgcaaacaaccaaagctgaaatatactttcttctggatgaatctggaagtatactc
tctcaagagtttgaagatatgaagaactttaccaggcaatggcttgatgcatttgaggtt
ggacgtaaccatgtgcgctttgggttggtgaaatttgcagactccgcaaccactgttttc
cgattaaataagcataacacaaaagctgaaatcagacaggcagtgaatgacctcatcgtc
atgggagggggcaccaggactgatctagggttgtgagaaatgatcccgctattcgaagaa
gctgaacaaacacgtggggaaaaggttcggaagctcctgattgtcctcacagatggtgag
tcaagaaatacggcagagccagtagaagttcctgctaaacttctgagaatagaacagaac
gtcaccatttatgccattggtgtgaaaaatgcatctgtgccggagttggaattaatagct
ggcagcccaaaaagaacattttatgtcaaaaactttgatttccttaatgaaatcaagaaa
agcatcattacagaaatatgcttctttgaaggttgtgaaggtctttttgcagatgttgtc
ttcctgcttgatggatcagaaagtgttgatgctcaggactttaaaaaaatgaaggagatg
atggagcttataatagacaagtttgcaattggaccagacaaggagcgtgttgcggttgtt
cagtacggcactgacacaaatgaggagttttccttaaatacgtttgataataaagctaca
atgtttgagaaaattagaaatatcaaacagatgaatggaaaaacaaacactggaaaagca
ctttcaaaagtattgcaatattttgagaatgataatggaggacgcgtcgatgctttaaag
ttcttgatagttcttacagatggagaaagtagggatgatgtagccaagcctgctaaaacc
ttgagagaaagtttaatcaatgttaacgccattggtatgagacatgcaaacagatctcag
attcttgccattgctggatcccatgacggagtgttctttgaagatgcagttgcttccctg
aaagaattaacaactcaggtgcttcacaagatctgccacacagaatgcaagacaccagaa
ctggttgacataattttccttgtggatgcatctggaagtccaaataaagatggtttccag
gaaatgaaacacttaataaaacacacagtcagcaaatctgtggttggagaaaaacaggtg
cgatttggcgttgtcacctactctaacatccctcgtttggagttcacactaaaacagtac
tacagtcaggatgatgttctgagcgttatctcaaatctcaaagcttcagggggaaccaga
aacacggcccgagccctgatcgatacactctcctactttgacaaaaaacatggcggacga
cgagcaaagaacatttcccaagtgctatttctgattacagatggcaaggttaatgactta
agtggtctggcaaaatggcgtgaatcactggccaaatcagaggtcaacttttttcctatt
ggtaccgaagatgcggatgcagaacagcttaaggagatggtgggaaataaaggaaaagtg
ctctttgcaaacacctacaaggatctgcataaactacataaacgggtcacccaagagctc
tgcaatcttaccaaaccaatttgtgagacggagcaatcagaccttgtttttttaattgat
ggatcagagagtattgatgaaaaaggttggaatactatcaaaaaaaccatgattgaggtt
gtgaaagtgctgaatattactcaagacaactggcgagtgggtgttgcccagttcagcaac
atactcctgcatcaattttacctgaacacatacacagatcttacagaattggcagaagct
ataaacaaaattgtacaatggaagcagggtacagatatttggaatgccctaagaaatgtg
agatattacttcactagagagaatggatccagaatagatgaaggaattgctcagaatctc
ctgctgatcacagatggaaaatctgatgataagaaagactcgaatgcattagcgtttttt
agaaacaatgaaataaaaataactgccattggggttggcaaagaaaaggacataaataaa
ttcatgctgcttaatataactggatctcctgatcgggtccttattgagaccattgaaggc
cttatactgaagaaaaccataaagaaaattataaattcactctgtccaaaaaaacatccc
actaaggactgcaatattgacattgcctttgggtttgacgtgtccagacaagcaaacaca
caatctctgttgagacctcaggaggaacggttggttactgcagccatccaccgaatctcc
atgatgggtgatctgtgctgcgttacaaaggacaagattaccactagatttggctatagg
cttgtgtccggacaagatgggagtgttctggatgattttgaatttggcaattacagtgag
gatgtggtcaaaaaagtgatgttattgcgacctaaggcgaccctggctttcaacgagttt
ctattagattccttcagagaactgtttaaatcctctaaagccaaggcaaaggttctgata
atcttcacagatgggctggatgaaaacattcagcgtttaaaggagagttcagagaaactt
aggaaaagtggggtcagcgcactgctgattgtgtctttgnggggaataatagacgttcag
gagctggaatttggcagaggtttcggctacatgcagcctctgacaatcaacatgctgaat
ttaggcaacgctctaatgaaacagatagaaacagtggcgctgagggaatgctgcaatatg
tcttgttcatgcaccggggtacctggaccaccaggacaccctggattgccaggtcaaaag
ggaaatactggtcagaagggtcatcctggatatccaggagatgaaggtgttgagggagac
cgaggaccaccagggctgaatggaactcagggacataacggttgccgtggaaacagagga
atcaagggccagagaggctacactggaaataaaggagaacatggggaggatggggtggat
ggagtggatggagaacagggtgatgctggcctaaatgggcttccaggacctaaaggagac
ctgggcagagctggtatgaaaggtttcagaggcagtcctggacctaagggagacattgga
ttgagaggagatcctggcgcaccaggaatagacaacagaattccaggtccaaaaggcgag
aagggagatactgggctcccgggtgaccaggggctcattggacctcctggcagacctgga
gataatggtgatcctggtgttccaggaagaaaaggcccaccaggattgccgggtcagtct
tcaaatcaaaaaggagaagctggacagccagggtctcctggttatcctggacaagtggga
ccaccaggaacaaaagggtcaaaaggaggcaatggtcctccaggtgtacctggaattcag
ggtccctttggccgacctggatctgaaggttcaaagggaggtcgaggacaaagagggcaa
aggggtacaccaggtgacccagggcccaaaggagcgctgggaccagagggattcagaggg
cctctgggacaagatggaagagatgggtatggacctgctgggcccaaaggacacagggga
agcacaggatactttggcctccctggtttgcagggtgaggatggtaccaaaggatccagt
ggaagtaaaggacataaaggttatcgaggaagaccgggaaacgcaggtactcgcggttct
caaggtactccaggagagaatgggatggacggacacaggggtgaaaaaggacctcctgga
atcagtccaatgcctgaatgcgacctggtcgattacatacgcaaaaactgtccttgctgc
tccgataatggtacccagtgtccagttcaccccacagacctggtgatagcattagacatg
tctgcaggtgtaactcctcaagtgttcgagcgcatgcgatctgctgctctatccttactg
gaagacatttccattgccgaaacaaattgtccatggggaacacgagtgtctgtgatctcc
tacagcagcgagtccaagaacctgatccgtttcgcagaccaccttaagaagaagatcctt
ttggaaactataagagcattcgctctagagagaaccacaaaaaccagagacatcggacaa
gccatgagcttcgtggcccggaacatcttcaaacgttcccgaaagggcaggcttatgagg
aaagtggccgtgttcttcacaaatgggccatcgagggatgaattaagccttgcaacagcc
atgctggagttcaaggctgcagacattggccttggagtgatcgccttaaatcctgctgat
gatgtgaggcgagcaatgcaggttgacgacacacgaagctacattattgttgatggcaga
ggagtaaatcgcattaaacggtgcatcatttgttttgatcgttgtaacccagacccagtg
tgtagtgtaattttgccgcctccacccctgctgatggatttggacctgtctgtgctgctg
gatagctctgataaactgaagactcaacagtatgtaagcgcaaaggagcttctgctgtct
ctgttggaccacattgatgtcagcaacgagccgagccgagcggatggtaaaaccagagtg
tccgtctaccagcagagctccatttacggcaactcttacatgaacgaggagttcagcttc
actaaatttaaagatcgcaatatcatgaagaggcatatcactaatacagtaaagcaagta
ggcgggatatccaatcctgagtttgctttggagaggctaattactgatgttatccttaaa
gcagaaagaccacgaagcaaacgaatggtcatggctgttttttgtgaagactctaagtac
aacaaagctcagcttgaatatttgtctagactgtgtcggtgtcagaatgtcgttatgttt
atcctcatggcgggacagagatttgactggacacagatggaggagctcatcaactctcgt
ctggagcagcacctggtattcttggatgacagagattatggcgtacgctacacttacgcc
tttctgaatatgctccgcagaggaatcttaccccggttatcactacaacctcgtgactgt
gttggttttgtgccgaggcccagtggacctggaccacaacccccagacatagatattctt
cccactgaagtccccactgaagtccccactgaagagcccactgaagagcccactgaagag
cccactgaagagcccaccacaacggagtaccctccgtatgagtatagtgtgatgacaaag
aaccattcatggaacttgatgatactgaacgatttacagaagagcacgaagaggtccaaa
ccaagccctcgaagactgaacatgtattcagtggcgcaaggaaatactggaatgtactgt
ttgtttccaacagcacgatgcttccttgagaaagatgttggccgtgtgtgtggatcgtat
ctgtccagatggtactacagccaggagactaagaaatgcatgcacttctggtatggcggt
tgtgatggaaatgaaaaccgattcctgacagaagacgagtgcgcgatggaatgcgtgtct
acagaatttgaaaaccttccaaaagatgattccagtatcaaggacatttgcgaactcaat
ctcgatgcggggctttgctcaaactttacagtgaaatggtatttcaacacccgtagtggc
caatgcatccttttctggtacggaggctgtgaaggaaacggcaacaggttcaacactcag
gaggactgtgagcttcgctgtcttagagccaaaaaagtatctccaaacatctaa
DBGET
integrated database retrieval system
