Labeo rohita (rohu): 127175257
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Entry
127175257 CDS
T09007
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
127175257 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127175257 (msh6)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
127175257 (msh6)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
127175257
NCBI-ProteinID:
XP_050982172
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All DBs
Position
13:33187867..33201469
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AA seq
1365 aa
AA seq
DB search
MAKQSSLFNFFTKSPPLAVKAKSNPSPVEADAVSRSNTSPKEEAKVNSKKTPPKPAKSQA
KAGHAKLFGEKAATAKESKEQSSIFSAGTLVWAKMEGYPWWPCMVVPQPLTGQQMRGRGR
DQRLHVHFFDEPPTRGWVNTKYIKEYQGSDSADAKSGGVFFSGKPVIRKAMELADVAMKD
SPEKRLKMSICKDPSDDEEENEEDMEVDKSTLSDAEMSEEEAAEKPKPSRRSSRAAAEKG
QKSKRRRIVVASDSDDSGEEFKPDQAGGSSDEDDEEGVSSGAEEEESEPETEPDSPVKPV
KRKRPSEKPAKSKSKPDTPKRAPAVLSSVASDTKSRLSAFSAPDNFESQNGGANGTEGGP
TVWDHEKLDWLQDGKRKDAQRKRQSDENYDPSTLYVPEDFLNRTTPGMRRWWQLKSEMFD
TVLFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPEIGFGRFSDVLVQKGYKVAR
VEQTETPEMMEARCKTMARPTKFDRVVKREVCRIITRGTQTYSVLDGAPSETQSKYLLSI
KEKSEEDSAGHGHIYGVCFIDTSVGRFHIGQFQDDRHCSRLRTLVAHYSPAQVVFEKGNP
SAETLKIFKAVVSSSLQEGLNAGSQFWDAQKTLKVLSEEDYFKESNENGSVLPPTLKAMT
SECDALSLTPKTSYELALSAFGGCIFYLKKCLVDQELLSMGNFEEYVPVDVEMDQAGGAS
CFFAQTRQRMVLDGVTLANLEILQNSSSGGPEGTLLERLDTCCTPFGKRLLKQWVCAPLC
NPSSIGDRLDALEDLMGAPSQATEVTDLLKKLPDLERLLSKIHSMGTPLKGQDHPDTRAI
LYEEVVYSKRKIADFLAALEGFKVMREIVSNMESVADGFKSKLLRQVVLLKTENDDGLFP
DLSPELKRWDTAFDHQKARTTGVITPKAGFDPEYDQALNGIKDCERGLQEYLDRQKKRLG
CKNLSYWGTGRNRYQLEVPDSISERSVPEEYEVRSTKKGWKRYSTKEIEKLFSELQSWED
KRDAALKDCMRRLFYNFDKNYKDWQTAVECMAVLDVLLSMSHYSQSGDGPMVRPEIVLPG
DGSQSRPFLDLRGSRHPCVTKTFFGDDFIPNDIFIACPGGEEEDDDDGKALAPCVLVTGP
NMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFVELS
ETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHYHSLVED
HAQDPAVRLGHMACMVENECEDPSQETITFLYKFIGGACPKSYGFNAARLANIPEEVIQS
GHKKAREFERSTVSLRIFKKLCSFAENPTADREQFTTLVRMIGNL
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagttctctgtttaatttcttcacaaagtcgccgcctctcgcggtaaag
gccaaatctaacccatctccggtggaggcagatgcagtgagcagatccaacacctcaccc
aaggaagaagctaaagtcaacagcaagaaaactccaccaaaacctgccaaatctcaagct
aaagccggacatgcgaaactgtttggagagaaagcagccactgcgaaagagagcaaagag
cagtcatccatatttagtgctggcactctggtctgggccaagatggaaggctatccctgg
tggccctgtatggttgttcctcaacccctcaccggacagcagatgaggggccgtggccga
gaccaaagactccatgttcatttctttgatgaaccaccaacccgaggttgggttaacaca
aaatacataaaagagtatcaaggctctgacagtgcagatgccaaatccggcggcgtgttc
ttcagcggtaaacctgtgatccgtaaagctatggagctggcagatgttgcgatgaaggac
agtcctgagaagagactgaagatgtccatatgtaaggatccttcagatgatgaagaggag
aatgaggaggatatggaggttgataaatcaaccttgtcagatgcagaaatgtctgaggaa
gaggctgcagaaaagccaaagcccagccgacgttcatctcgtgctgcagctgagaaaggt
cagaagtcgaagcgccgacgaatcgtggtggcgtctgacagcgatgactctggcgaagag
ttcaaacctgatcaggcaggaggaagcagcgatgaggatgacgaggagggagtcagtagc
ggagctgaggaagaagaaagcgagccagagactgaaccagacagccctgtcaaaccagta
aagcgcaaacgtccttcagagaagcctgctaaatcaaaaagcaaaccagataccccaaaa
cgagcacctgctgttctttcatctgtggcatctgacaccaaatctcgactgtctgctttc
tccgccccggacaacttcgaaagtcaaaacggcggtgcaaatggaacagaaggaggacca
actgtgtgggaccatgagaaactcgattggctgcaggatggcaaaagaaaagatgctcag
cgtaaacgtcagtcggatgaaaactacgacccttcgactttatacgttcctgaagatttc
ctaaacaggacgacgcctggaatgcgccgatggtggcagctgaagtctgagatgtttgat
accgttctcttttataaagttggtaagttttacgagctctaccacatggacgccgtaatt
ggcgtcaacgaactcggccttaccttcatgaaaggtacatgggcccattccggcttcccc
gaaattggcttcggacgcttctcagacgtcctcgtgcaaaaaggctacaaagtggctcga
gtggaacaaaccgagacgcctgagatgatggaagcacgatgtaagacaatggcgcgtccc
acgaaattcgaccgcgtcgtcaagcgagaggtttgccgaattatcacgcgagggactcag
acgtacagcgtgctcgacggtgccccttctgaaacccaaagcaagtacctgttgagcatt
aaagagaagagcgaggaggacagcgcgggacatggacacatctacggggtgtgttttatt
gacacctcagtggggcgtttccatatcggacaattccaggatgaccgccattgttcgcgt
ttgcgaactctagtggcgcattattctccagcacaggtggttttcgagaagggcaacccg
tcagctgagacgctgaaaatctttaaggctgtcgtgtcgtcatctctacaagaaggcctc
aatgctggttcgcagttttgggatgcccagaagacgctcaaggtcctttcagaggaagac
tactttaaagaaagcaatgaaaatggatcggtgttgcctccgactctaaaagcaatgaca
tccgaatgcgacgctttaagtctcacgccaaaaacaagttatgagcttgctctttctgcc
tttggcggatgcatattctaccttaagaaatgtctagtggatcaggagcttctgtccatg
ggaaactttgaggagtatgttcctgtcgatgtcgagatggaccaggctggaggagcttcg
tgcttctttgcccagactcgtcagcgaatggttttggatggagtgacacttgctaacctt
gagattcttcagaacagctcaagtggaggtcctgagggaaccctacttgagcgactggac
acgtgttgcactcccttcggcaaacggttgctaaaacaatgggtttgcgcccctctttgc
aatccatcctccattggagatcgcctagatgctttggaggacctaatgggtgcgccgtcc
caagcgactgaagttacagacctgctaaagaagcttccggatctcgaaaggctgcttagc
aagattcacagcatgggtactcctttaaaaggacaggaccatccggacacccgagccatt
ttgtacgaagaagtcgtttatagtaaacgcaagattgctgacttcctcgcagcacttgaa
ggctttaaagtcatgagagaaattgtgtcaaacatggagtctgttgctgacggcttcaaa
tcaaaactcttgcgtcaagtggtgcttctcaagactgaaaatgatgatgggcttttcccc
gacctctcgccagagctcaaacgttgggatacggctttcgaccatcagaaagctcgcaca
acaggcgtcatcacaccaaaagccggcttcgatccagaatacgaccaagccttaaatgga
attaaagactgcgagagaggcctgcaggaatatctggaccgacagaagaagcgattgggg
tgtaagaatctgtcttattggggaacgggaaggaaccgctaccaactcgaagttccagac
agtatttccgagagaagcgtgccggaggagtatgaggtgagatccaccaagaagggatgg
aaacgctactcgactaaggagattgagaagctgttttcagagctacagagctgggaagac
aaacgagacgcagcactgaaggactgcatgagaagactcttctacaacttcgacaagaat
tacaaagactggcagacagcggttgagtgcatggctgtacttgatgtgctgttgagcatg
tcccactacagtcagagcggcgacgggcccatggtgagaccggagatagttctcccaggt
gacgggtctcagtcacgcccattcctggatctgagaggctctcgtcacccttgcgtcacc
aagaccttcttcggtgatgatttcatccccaatgacatcttcatcgcctgtcctggtggt
gaagaagaagatgatgacgacggtaaagcacttgctccatgtgtactagtcactgggcca
aacatgggaggcaagtccaccctaatgagacagtgtggtctggtggtgattttggctcag
ctgggctgttacgtacctgctgagagtttgcgtctcactcctgtggatcgagtcttcact
cgtcttggcgcctctgaccgtataatgtccggtgaaagtacattctttgtggagctgagc
gagacggccagcatcctgctgcacgccaccaaccactccctcgtcctgctggatgaactg
ggcagaggtacggccacatatgacggcacagccattgcgagcgcagtggtgaaggagctg
tcagagaagatctgctgccggaccctgttctccactcattaccactcactggtggaggac
cacgcccaggaccccgccgtcagactcggacacatggcctgtatggtggagaacgagtgc
gaggaccccagtcaggagaccatcaccttcctctacaaattcattggtggcgcgtgtccc
aaaagttacggcttcaatgcagctcgcctggcaaacatcccggaggaagtcattcagtct
ggtcataagaaggcccgcgagtttgagaggagcaccgtgtctctcaggattttcaagaag
ttgtgttcctttgcggaaaaccccaccgctgatcgcgagcagttcacgaccttggttcgg
atgatcggcaacctgtga
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