Labeo rohita (rohu): 127175617
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Entry
127175617 CDS
T09007
Symbol
ddx43
Name
(RefSeq) probable ATP-dependent RNA helicase DDX43 isoform X1
KO
K17043
ATP-dependent RNA helicase DDX43 [EC:
5.6.2.7
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lroh03041
]
127175617 (ddx43)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127175617 (ddx43)
Spliceosome [BR:
lroh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
127175617 (ddx43)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_1
MOEP19
ResIII
KH_PNO1_2nd
KH_2
CMS1
KH-I_KHDC4-BBP
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
127175617
NCBI-ProteinID:
XP_050982743
LinkDB
All DBs
Position
13:complement(19411569..19421126)
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AA seq
705 aa
AA seq
DB search
MSDWEDEYDTDGVAISKPLAVQTVSVKSWRPPSPRGAPSRQTTSVGAKFGGDGEQWRNWR
DRDPGSNVYDGATGKNNSYSRSRTGPTGCRGGGDRSGSSPVTLSVENSLVGRIIGRGGAK
IRELEESSGASIKINNGADDAEVLIFGSRDAQFKAKDMIEDLVHGNSVRGSGFGNVQSPG
NGNAGYHNDSCWSAAAVRAAAAAVPAPVPIDWTALRENRDKYEAMKWQDLPPLKKDFYIE
AKSVAARSTEEVKIWRKENNNIFVDDLKDGEKRTIPNPVCTFEEAFAHYPGIMENIVRVG
FKKPTPIQSQAWPIILKGTDLIGIAQTGTGKTLAYLLPGFIHMDEQPVPRDKRDGPGMLV
LTPTRELALQIEAECNKYSYKGFKSICIYGGGDRKAQIKVVTSGVDIVIATPGRLNDLQM
NELISLRSITYLVLDEADRMLDMGFEPQIMKIILDIRPDRQTVMTSATWPTGVRRLAKSY
LKDPMMVYVGTLDLAAVNTVQQTVLFVQEEEKKAFLFDFIDRMESQDKVLIFVGKKVKAD
DLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVATDLASRGLDVHDITHVFN
YDFPRNVEEYVHRVGRTGRAGRSGASVTLVTREDWKIASELITILERSGQDVPEELILMA
ERYEKHQREKAMYAPRGGRGRARGGRDGGGGGWRGSSRGGSDRWF
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactgggaagatgagtacgatacggatggtgtggcgatttcaaagccgttagcc
gttcaaacggtgtcggtaaagtcatggaggcctccatcgcctagaggcgcgccgagtcga
caaaccacgagtgtcggcgcaaagtttggtggagacggcgagcagtggagaaactggagg
gaccgagaccctggatcaaatgtttatgacggagcaaccggtaaaaataacagttacagt
cgttccaggactggacctacggggtgtcgcggtggtggagacagatcaggttcatcaccg
gtaactctcagtgtggaaaactctttggtcgggaggataataggtcgaggtggtgcgaaa
attcgggagcttgaagagagcagtggagcatcgataaagataaacaatggtgcagatgac
gctgaggtgcttatctttggaagccgtgatgctcagttcaaagccaaagacatgattgaa
gatcttgtgcatgggaattctgtcagaggttctggatttggaaatgttcaatctccaggt
aacggcaatgcaggatatcataatgactcctgctggtcagctgctgctgtacgagctgcg
gctgcagctgtcccagcacctgtgccaattgactggactgcgcttagagaaaaccgggac
aaatatgaagctatgaaatggcaagatcttccccctctaaagaaggatttctatattgaa
gcaaaatcagtggctgctcgcagtacagaggaagtcaaaatctggagaaaagagaacaac
aacatctttgtagatgacttgaaagatggggagaaaagaactattcccaatccagtgtgc
acttttgaggaggcttttgctcactatcctggaataatggaaaacattgtcagagtggga
tttaaaaagccaactcccattcagtcacaagcatggccaatcatcctgaaaggaacagat
ctgattggaatagcccagacgggaacaggcaaaactctggcctacctgcttcctggcttt
attcatatggatgagcaacctgttccaagggacaagagagatggccctggcatgttggtt
ttgactcccactcgtgagctggccctacagattgaagctgagtgcaacaaatacagctac
aaagggtttaaaagcatctgtatctatggaggaggtgacagaaaggcccagattaaagta
gtgaccagtggtgtggacatagtcattgccacaccaggacgattaaatgatctgcagatg
aatgagctcatcagcttgcgttccatcacctatttggtgttggatgaagctgatagaatg
ctggacatgggctttgaacctcaaatcatgaaaatcattctggatattcgacctgacaga
caaactgttatgactagtgccacctggccaacaggtgtcagacggctggccaaatcctac
ctgaaagacccaatgatggtttatgtgggcaccttagatctagcggcagtgaacactgtt
cagcagacagttctgttcgtgcaggaggaagagaagaaagcgttcctttttgacttcatc
gaccgaatggagtctcaggacaaagttctaatatttgttggaaaaaaagtaaaagccgat
gacctttccagtgacctgtgtctgcagggtatagcggttcagtctctgcatggagaccga
gagcagtgcgacagggaagaggcactgcaagactttaaagatggtcgtgtgcgtattctg
gtggcgactgacctggcctcacgtggactagacgttcatgacatcacgcatgtttttaac
tacgacttcccacggaatgtggaggagtatgtgcaccgcgtcgggagaacaggtcgagca
gggaggtctggtgcatctgtaaccctggtaacaagggaggactggaaaatagcttctgag
ttaatcaccatcctggagagatctggtcaggatgttccagaagagcttatactgatggct
gaacgttatgaaaaacaccagagggagaaagcaatgtatgcgcccagaggtggaagagga
agagcaagaggaggaagagatggaggaggaggaggatggagaggtagttcaagaggaggc
tcagatcggtggttctga
DBGET
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