Labeo rohita (rohu): 127175692
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Entry
127175692 CDS
T09007
Symbol
actn1
Name
(RefSeq) alpha-actinin-1 isoform X1
KO
K05699
actinin alpha 1/4
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04520
Adherens junction
lroh04530
Tight junction
lroh04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127175692 (actn1)
04520 Adherens junction
127175692 (actn1)
04530 Tight junction
127175692 (actn1)
09142 Cell motility
04810 Regulation of actin cytoskeleton
127175692 (actn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127175692 (actn1)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lroh04812
]
127175692 (actn1)
04147 Exosome [BR:
lroh04147
]
127175692 (actn1)
Membrane trafficking [BR:
lroh04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
127175692 (actn1)
Cytoskeleton proteins [BR:
lroh04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
127175692 (actn1)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127175692 (actn1)
Exosomal proteins of colorectal cancer cells
127175692 (actn1)
Exosomal proteins of bladder cancer cells
127175692 (actn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
EFhand_Ca_insen
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
EF-hand_5
Motif
Other DBs
NCBI-GeneID:
127175692
NCBI-ProteinID:
XP_050982886
LinkDB
All DBs
Position
13:complement(25557488..25595252)
Genome browser
AA seq
901 aa
AA seq
DB search
MDHHHHQQQHHHQYDGGENDYMQQEDDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQ
IENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIG
AEEIVDGNAKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHI
SWKDGLGFCALIHRHRPELIDYGKLRKDDPMTNLNTAFDVAEKYLDIPKMLDAEDIVGTA
RPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIR
RTIPWLENRVPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRP
AFMPSEGKMVSDISNAWGGLEGAEKGYEEWLLNEIRRLERLDHLAEKFRQKAAIHEAWTD
GKEEMLQQKDYETASLSDIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELEYYDSPS
VNARCQRICDQWDSLGVLTQKRSEALQRTEKLLETIDQLYLEFAKRAAPFNNWMEGAMED
LQDTFIVHTIEEIQGLSTAHEQFKATLPEADKERQAILGIHNEIAKIVQTYHVNMAGTNP
YTTINPQEINAKWDKVRQLVPQRDQALIEEHARQQNNERLRRQFANQANVIGPWIQTKME
EIGRISIEMHGTLEDQLTHLRQYEKSIVNYKPKIDQLEGDHQLIQEALIFDNKHTNYTME
HIRVGWEQLLTTIARTINEIENQILTRDAKGISQDQMNEFRASFNHFDRDHSGTLGAEEF
KACLISLGFDIGNDAQGEAEFARIMSIVDPNRLGVVTFQAFIDFMSRETADTDTADQVMA
SFKVLAGDKNYILADELRRELPPDQAEYCIARMTPYTGPDAVPGALDYMSFSTALYGESD
L
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccaccaccatcaacaacaacatcatcatcaatatgatggaggagagaacgac
tatatgcaacaggaagatgactgggaccgggatctgctgcttgaccccgcctgggagaaa
caacagcgaaagacgtttactgcatggtgcaattctcatctacgaaaggcagggacgcag
atcgaaaacattgaggaggattttagagacggactcaaactcatgctgctcctagaggtc
atttcaggagaacgcttggccaaaccagagagaggaaaaatgagagtccacaagatctcc
aatgtgaataaggctctggacttcattgccagcaaaggagtcaaactggtttctattgga
gcagaggagattgttgatgggaacgctaagatgactctggggatgatctggaccattatc
ctccgcttcgccatccaggacatctcagtggaggagacctcagctaaagaaggcctgctg
ctgtggtgccagaggaaaacagctccctacaaaaacgtcaacatccagaatttccacatc
agttggaaggatggattgggcttctgtgcactcattcacagacatcgtccagagctcatt
gattatggtaaactgcgcaaggacgacccaatgactaatctgaacaccgcctttgacgtc
gctgagaagtacctggacatccctaagatgctggatgcagaagatattgttggtacggcc
cgtcccgatgagaaggccatcatgacctacgtttctagcttctaccatgccttctctggg
gcgcagaaggccgagacagcagccaatcggatctgcaaagtcctggctgtcaatcaggag
aacgagcaactgatggaagactatgagaaactggccagtgatctcctggagtggattcgc
agaacaatcccatggttggagaaccgcgttccagagaacaccatgcaggccatgcagcaa
aagttagaggatttccgggactaccgacgacttcacaaaccgcccaaagttcaggagaaa
tgtcagctggagatcaacttcaacacactgcagaccaaactccgccttagtaaccggcct
gcgttcatgccctcggagggcaagatggtctcggatatctccaatgcttggggaggtctt
gagggagcagagaagggttacgaagagtggctactgaatgagattcgcagactggagaga
ctcgaccatcttgctgaaaaattccgccagaaagccgctatccatgaggcctggactgat
ggtaaggaggagatgctgcagcagaaagactacgagaccgcatccctctcggacatcaaa
gctttgctgaagaagcatgaggcgtttgaaagtgaccttgcagctcatcaggacagagtg
gaacagattgctgccattgcacaggagctcaatgagttggagtactatgactctcccagt
gtaaatgctcgctgtcagcggatctgtgatcagtgggattcactgggggttttaactcag
aaacgcagtgaggccttgcagaggactgagaaactgttggaaacgattgatcagctgtac
ctggagtttgccaaaagggcggcgccctttaacaactggatggagggagccatggaagac
ctgcaggacacttttatcgtccacaccattgaggagatacagggactcagcacagcccat
gagcagtttaaagccacactgcccgaggcagataaggaacgacaggccatcctgggcatc
cataatgaaattgctaaaattgtgcagacataccacgtcaacatggctggcaccaacccc
tacaccaccatcaacccccaggagatcaatgccaaatgggataaggtgaggcagttggta
ccccagagagatcaggccctgatagaagaacacgctcgtcagcagaataatgagagactg
cgcagacagtttgctaatcaggcaaatgtcattgggccctggatccagaccaagatggag
gaaattggccgaatctctattgagatgcacgggaccctggaggatcagctgacccacctt
cggcagtatgagaagagcattgtaaactacaaaccaaagatcgaccagctagagggagac
catcaactaatacaggaagcacttatttttgacaacaaacacactaactacaccatggag
cacatccgtgtaggctgggagcagctcctcaccaccatcgctcgcaccattaacgagatc
gagaaccagattctgacccgtgacgccaaaggcatcagccaagaccaaatgaacgagttc
agagcctcgttcaaccacttcgatcgagaccactcgggcacactgggcgctgaggagttc
aaagcctgccttatcagtctgggcttcgatatcgggaacgacgcacagggagaggcggag
tttgcccgcatcatgagcattgtggatcctaacagactgggagtggtcacattccaggcc
ttcattgactttatgtctcgcgagacggccgacacagacacagctgatcaggtcatggca
tcctttaaagtccttgctggagacaagaactatatcctggcagatgagctgaggcgtgag
ctcccccctgaccaggccgagtactgcatcgcccgcatgacgccttacaccggccctgac
gccgtcccgggagctctcgactacatgtccttctccaccgccctctatggggagagtgac
ctctga
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