Labeo rohita (rohu): 127175777
Help
Entry
127175777 CDS
T09007
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127175777 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127175777 (clp1)
Enzymes [BR:
lroh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
127175777 (clp1)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127175777 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
TniB
MMR_HSR1
CbiA
AAA_16
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
127175777
NCBI-ProteinID:
XP_050982991
LinkDB
All DBs
Position
14:18180450..18184824
Genome browser
AA seq
445 aa
AA seq
DB search
MTAEPSEKSAEEGLSSSGSAGTSGTRFDLEKETELRFEVEAGERAQLELLSGLAEVFGSE
LNRNKKYTFGPGSKIAVFTWQGCSVSLSGKTEVAYISKDTPMLLYLNTHAALEQMRRQAE
KENERGPRVMVVGPTDVGKSTVCRVLLNYAVRLGRRPTLVELDVGQSSVSVPGTMSALCI
ERPADVEEGFSVQAPLVFHFGSTTPGTNIKLYNKLTSSLAEVFSQRCEVNRRASVGGCII
NTCGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVER
SKDCRRESRDEKIREYFYGFRGTSFYPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDD
TQLKLVPVSPGRDLTHHVLSVSSVDDDAEVGAGQSRGILESPVCGFIVVTAVDTQAQVMT
VLSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgactgcagaaccctcagaaaagtcagcggaggagggcctgagttcgtcgggcagcgct
gggacttcaggtacgcgattcgacctggagaaagagacagaactgcgttttgaggtcgaa
gcaggagaacgagcccagctcgagctgttgtccggtctggcagaggtgtttgggtccgaa
ctgaaccgtaataagaagtacactttcgggccaggctctaagattgccgtgttcacctgg
caaggctgcagtgtgtcgctttcaggcaaaacggaggtggcttatatctccaaagataca
cccatgctgctgtatctcaacacccatgcagctctagagcagatgagacgtcaggcagag
aaggagaatgagagaggccctcgggtaatggttgtcggaccaaccgatgtgggaaagtca
acagtatgtcgagtgttactgaactatgctgtgcgactgggacgaagacctacgctagtg
gagctggatgtcggccagagcagcgtctctgtgcctggaactatgtcagctctgtgcatt
gagcgtcccgctgatgtagaagaaggtttctctgtgcaggctccgcttgtctttcacttt
ggctctaccacaccgggaacaaacatcaaactttacaacaagctgacttcaagccttgca
gaagtgttttcccagcgctgtgaggtgaaccgcagggctagtgtgggaggctgtataatc
aacacctgtggctgggtcaaaggttcaggctaccaggctctggtccactgcgcttcagct
ttccaggtggatgttgtcctagtcctggaccaggagcgtctctacaatgagctcaaacgt
gacctgccacactttgtacgtgtcgtccttctgccaaagtctggcggcgtggtggagcgc
tccaaagactgccgccgagagtcccgggacgaaaagatccgggaatacttctacggcttc
cgcgggacttctttttaccctcatgcttttgatgtgcgcttttcagatgtgcgcatttac
aagatcggtgcgccctcgattccagactcctgtctccctctgggtatgtcccaggacgac
acccagctcaaactcgtccctgtcagccctggcagggatttaacccaccatgtgctaagt
gtgagttcggtggatgatgatgcagaggtgggtgcgggacagagcagagggattttagag
agtcccgtgtgtggcttcatagttgtgacagcggtggacacacaagctcaggttatgacg
gtactctcaccagcgcccagaccgctgccgcgacacactctgctcatcatggacattcgt
ttcatcgaccttaagtag
DBGET
integrated database retrieval system
