Labeo rohita (rohu): 127175873
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Entry
127175873 CDS
T09007
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh02010
ABC transporters
lroh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
127175873 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
127175873 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lroh02000
]
127175873 (abca1b)
Transporters [BR:
lroh02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
127175873 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
MukB
AAA_23
Motif
Other DBs
NCBI-GeneID:
127175873
NCBI-ProteinID:
XP_050983128
LinkDB
All DBs
Position
14:20829714..20872975
Genome browser
AA seq
2282 aa
AA seq
DB search
MSVFTQLGLLLWKNFTYRRRQTLQLLTEIVWPLFIFFILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIVCNANNPCFRHPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDK
SLDGFKELINAVKVMQNNTAGFKLKDFLRENETLSTFLQQNASFSHNYVQNILEADVNLE
KVLIKGFGVHLRDMCSTTTLEDFVTIPDKRVARFTQNVICSSPNSWLDQAEKHFKSNLDF
LKPIRSDIRTNATDVRLVAKATDNLLESLGSLAVELASMRSWSDLRNEILFLTENATDSP
SLMYQAVSRIVCGHPEGGGLKIKSLNWYEDSNFQALFGSHNDSDDEPVSVYDNTTTPYCN
NLMKNMEASPISRMIWRALKPLLMGKILYTPHNPATQKIIHEVNKTFQELGILRDLGGMW
EEARPKVWNFMENSEEVNLMRTLLRNNATANFFSTQLAGTQWSVEDVISFLSKHSEDTRP
HGTAFTWRDVFNETDQAIMSISRFMECVNLDKLEPVSTEEKLVNDSMSLLDNRKFWAGIV
FLDVHSNSSELPPHVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYVWGGFTYLQ
DVVEHSIIRAVTGTKEKTGVYIQQMPYPCYVDDIFLRIMSRSMPLFMTLAWMYSVAIIIK
GVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISASLLVLLLKMGNLLPYSDPGV
VFLFLGSFAVVTIMQCFLISTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFSAKV
IASLLSPVAFGFGCEYFALFEEQGVGLQWNNLFSSPMEEDNYNLTTCLILMYFDAFMYGV
MTWYIEAVFPGQYGIPRPWYFPFTKSYWFGESNTNNTAIHGKKGNAGAVCIEEEPTHLEL
GVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTA
YIMGKDIRSELSSIRRSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEEVKAEMEQILI
DTGLPHKRKSRTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKY
RAGRTILLSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKKNTEPS
LSSCRNSSSTVSFVKKDDNASESSSDAGLGSDQESEAATAIGTTWPESPVVPVDVALISS
LILKHVPAARMVEDLGHEITYVLPYESAKDGAFVELFHDLDDRLADLGISSYGVSDTTLE
EIFLKVAEDSGVDTEIISDGTLPVRRHRRHAFGADHQSCLKPLTEDDNFDCNDSDGDPES
KETDYLSVSNGKGSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIAL
VFSLIVPPFGKYPSLALNPWMYEEQFTFISDDAPHDISTQKLLNALLDDPGFGTRCMEGE
PIPKAPCTIGDEEWSTPEVAESVMDIFTSTNWTMDNPSPACECSCNGKKKMLPECPAGAG
GLPPPQMKLSETEILQNLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARST
QVLPPAEEIDDAISRVREIFQLGKDSGSAADRFLKSLSAFINGLDTKNNVKIWFNNKGWH
SIGAFLNVMNNGILRANLPPGKDPRQFGMTAFNHPLNLTKEQLSQVALMTTSVDVLVSIC
VIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPYLYWLANFLWDMCNYVVPATLVILI
FVCFQQKAYVSATNLPVLALLLLLYGWSITPLMYPASFLFKIPSTAYVVLTSVNILIGIN
GSVSTFVMELFGSNEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERFGENRF
RSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYRFFFEPKSLSAKLSPIGEEDEDVARERQ
RIMNGAGQGDILELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLT
GDSVVTKGEAFLAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKE
VCEVAEWGIRKLGLVKYVDKNAGSYSGGNMRKLSTAISLIGAPPVVFLDEPTTGMDPKAR
RALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYT
IILRVAGPDPDLQPVMKFIESELPGSTLKEKHRNMLQYQLPSSLTSLAHIFSILAKNKEF
LRIEDYSVSQTTLDQVFVNFAKDQSDDHSDSSIRRKDTAVNMVLLSPLSTKENMEKPIES
FV
NT seq
6849 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtctttactcaactgggtctgctgctgtggaagaacttcacctacagaaggaga
caaacgctccaactgctgacggagattgtgtggcctctctttattttcttcatcctgatc
gctgtgaggttgaactacccgccttatgagcaacatgaatgtcactttcccaacaaagcc
atgccgtcagcaggcaccctgccctggatccagggcatcgtctgcaacgccaacaacccg
tgcttccgacacccaacccctggggaatctccaggagtcgttggaaattttaatgattca
ataatatcacggctgttttctgatgccaagaagatcttactatacagtcaaaatgacaag
agcttagatggattcaaggagcttatcaatgcagtaaaagtcatgcaaaataacacagct
ggtttcaagctgaaggacttcctgcgtgaaaatgagaccctttccacgttcctccaacag
aacgcctccttttcccataattatgtacagaatattctggaagctgatgtgaatcttgaa
aaggtgctgatcaaaggttttggcgtccatttaagggatatgtgcagcaccaccacactt
gaggattttgtgaccatcccagacaaaagggtggcgagattcacccagaacgtcatctgc
agctctcctaatagctggctggaccaggccgagaagcacttcaagtccaacttggatttc
cttaaacctattaggtcggacataaggactaatgccactgatgtccgtctagttgccaaa
gccacagacaaccttctggagagcctgggatcactggctgtggagctggccagtatgagg
agctggagtgacctgcgaaatgagatcctgtttctgacagaaaacgccacagactcaccg
agtctgatgtaccaggctgtgtcccgtatcgtgtgtggacacccggaaggcggaggcctc
aagatcaaatccctcaactggtacgaggacagcaacttccaggcactgtttggcagccac
aatgacagtgatgacgaaccagtttcagtctatgacaacaccacaactccatactgtaac
aacctgatgaagaacatggaagccagtcctatctctcgaatgatctggagagcattgaaa
cctctcctgatggggaagattctctacacgccacacaaccctgcaacacagaagatcatt
catgaggtcaacaagacattccaggagctcggaattttacgagatttaggcggaatgtgg
gaagaagctagaccgaaggtttggaacttcatggagaacagtgaagaagtaaatctaatg
cggacgcttcttcgaaacaatgccaccgctaatttcttcagcacccagttggctggaact
cagtggagtgtggaagatgttataagcttcttgtctaagcactccgaggacacacgtccc
cacggaacagcgtttacgtggcgggacgtcttcaatgagaccgaccaggctattatgagc
atatcccgtttcatggagtgtgtaaacctggataaacttgaacctgtgagcacagaggag
aaactggtcaacgactccatgagtctcttggataacagaaagttttgggctggaattgtc
tttctggacgttcattcaaacagctctgaacttcccccacatgtcaattacaagatccgc
atggatatcgacaatgtggagcgtacaaacaagattaaagatgggtattgggatcctggt
cccagggctgatccgtttgaggatttgcggtatgtttggggaggatttacttaccttcag
gatgtggttgaacacagcatcatcagagcagttactgggaccaaagagaagaccggtgtt
tacatccaacagatgccttatccatgttacgtagatgatattttccttcgcattatgagc
cgttccatgccgctttttatgactctggcttggatgtactcggtggccatcatcatcaaa
ggtgtcgtctatgagaaggaggcccggctcaaagagaccatgaggattatgggattggac
aatggaatcctgtggttcagctggttcattagcagcctcatccctcttctcatcagcgca
agcctgctcgttcttctacttaagatgggaaatctccttccctatagtgatcctggtgta
gtcttcctcttcctcgggtcattcgctgtggtaaccatcatgcagtgttttctgatcagt
acggcgttcgcacgtgccaacctggcagcggcttgtggcggcattatttacttcaccctc
tacctgccttacgtactctgcgtggcttggcaagactacgtgggcttcagcgccaaagtc
atcgctagcttactgtctccagtggcgtttggatttggctgtgagtattttgccctgttt
gaggagcagggtgtgggcctccagtggaataatctcttctccagcccaatggaagaagac
aactacaacctcaccacctgcctcatcctcatgtactttgatgccttcatgtatggggtc
atgacctggtacattgaggccgtgttcccagggcagtatggtattcccaggccatggtac
ttccctttcaccaaatcctactggtttggagagagcaacacaaacaatactgcaattcac
ggaaagaagggcaatgctggggccgtctgcattgaagaggaacccactcaccttgaattg
ggagtttacattgagaatcttgtgaaggtctaccgtcatggcaaaaagctagcagtcgat
ggattgacacttggcttctatgaagggcagataacctctttccttggtcacaatggagct
ggaaaaaccaccaccatgtctatcctaactggccttttccctcccacctctggcactgca
tatatcatgggcaaagatattcgctcagagctcagttccattagacggagcctcggagtg
tgtccacaacacaacgtcctgttcagcatgttgacagtagaagagcacatctggttctac
gcccgtctgaagggtctttctgaggaggaagtgaaggctgaaatggagcagattctgatt
gataccggccttccacataagcgcaaatccaggactagccagctgtcaggtggtatgcag
agaaaactttcagtagcccttgcttttgttggagggtccaaggttgttattctggatgag
cccactgcaggtgtggacccatatgctcgaagaggcatctgggaccttcttctgaagtat
cgtgcaggtcggactatccttctttcaacccatcatatggatgaagcggatattctgggc
gatcgtattgcaatcatctcccatggaaagctttgctgtgtgggctcttcactctttctt
aagactcaactgggaaccggatactatcttaccttggtgaagaaaaacactgagccttct
ctcagttcatgcaggaattcgagtagcactgtgtcttttgttaagaaagacgacaatgca
tctgagagcagctcggatgctggtctaggtagcgaccaagaaagcgaagccgccacagcg
atcggaactacatggcctgaatctcccgttgttcctgttgatgtggctctcatctccagt
ctaatcctaaagcacgttccagctgcccgcatggtggaagacctcggtcatgagatcaca
tatgtgctgccgtacgagtctgccaaagatggtgctttcgttgagctcttccatgacctg
gatgaccggcttgctgaccttggcatttcaagctatggtgtctcagatactacacttgaa
gagattttccttaaagtggcagaggacagtggagttgacacggaaatcatctcagatgga
actctgccagtgcgcagacatagacgacatgcatttggcgcagaccaccagagctgcctc
aaacccctgaccgaagacgataactttgactgcaacgattctgatggtgatccagaatcg
aaagagacagactatttgagtgtttccaatgggaaaggatcatatcaggtgaaaggctgg
agtttgaagaggcagcagtttgtggctttattgtggaagagattcctttacgctcgccgc
tcaaggaaaggcttctttgcacagattgttcttccggctgtgtttgtgtgcatcgctctg
gtgttcagtcttattgtgccaccatttggaaaatatccaagtctggctcttaacccctgg
atgtatgaagaacagtttacattcatcagtgatgatgctccacatgatataagcacacaa
aaattactcaacgctttattagatgatcctggctttggaacacgatgcatggaaggagaa
ccgattcctaaggctccctgtacaataggcgatgaggaatggtctacaccagaagtggca
gaaagcgtgatggacattttcacatcgacaaactggaccatggacaatccatcgcctgct
tgcgagtgcagctgtaatggcaaaaagaagatgctccctgaatgccctgctggtgcaggt
ggactgccacctcctcagatgaagctcagtgaaactgagatcctccagaacctgacggga
cgaaacatctcagactatctagtgaagacctacgcacagatcattgggaaaagcttaaag
aacaagatatgggtgaatgaattcagatatggaggattttcattgggtgctagaagcact
caggtgcttcctcctgctgaggagatcgatgatgccatttctagagtcagggagatcttc
caactgggaaaggactctggatcagcggccgaccgtttcttgaaaagcctgtctgccttc
atcaatgggctggacactaagaataacgtcaagatatggttcaataacaagggctggcac
agtattggagccttcctcaatgtgatgaacaatggtatcttgcgtgccaacttaccacct
ggcaaagacccccgtcagtttggcatgactgctttcaaccatccgctcaatctgaccaag
gaacagctttctcaagtggccctaatgactacctcagtggacgtgctggtttccatctgt
gtgatcttcgccatgtccttcgtccccgccagctttgttgtcttcctcattcaggagcga
gtgaataaggccaagcacatgcagtttatcagcggagttcagccgtacctctactggctg
gccaactttctgtgggatatgtgcaattacgttgttcctgctactctggtgatcttgatc
ttcgtgtgctttcaacaaaaagcctacgtctctgccaccaacctgcctgttcttgccctt
ctactgcttctttatggatggtccatcactcctcttatgtacccagcttcattcctcttc
aaaatccccagcaccgcttacgtggttctcactagcgtcaacatcctcattgggatcaat
ggcagcgtgtccacttttgtcatggagttatttggaagtaatgagattggcggcattaat
gacatcctgaagaacgttttgctcatcttcccacatttctgtctgggtcgaggtctcatc
gacatggtgaagaatcaggccatggctgacgctctagagagatttggtgagaaccgtttc
cgttctccattggagtgggacatggtgggcaagaatctttttgccatggctgtggaagga
gtggttttcttcatcatcacagtccttatccagtaccgtttcttctttgaacccaagtct
ttaagtgctaagttgagtccgattggagaggaagacgaggatgtggccagagagaggcag
aggatcatgaatggagctggacagggagacattcttgaactccgacaactcactaaggtg
tacaagcggaaacaaaagccggctgtcgatcgtctctgtgttggcattcctccaggagag
tgttttggtctgcttggtgtcaacggagctggaaagaccagcacttttaaaatgctgact
ggagactctgtggtcaccaaaggagaagcattcttggctgggaaaagtatactcagagaa
atagatgaagtacatcagaacatgggctactgcccccagtttgatgcaatcaatgatctg
ctgacaggacgggaacatctggaattctacgccatcctgcgcggtgtacctgagaaggaa
gtttgtgaggtggcggaatggggaatccgtaaactgggcctcgtgaagtacgtggacaaa
aacgcaggaagctacagcggtggcaacatgcgcaaactctccacagccatttcactcatt
ggagccccaccagtggtcttcctggacgagcccaccactggaatggaccccaaagcacga
cgagcactgtggaactgcattcacagcgtcatcaaagagggacgctctgttgtacttacc
tcacacagcatggaagaatgtgaagcgctgtgcaccaggatggccatcatggtgaacggc
aggttccgctgtctggggagcgtacagcacctgaagaacagatttggcgatgggtacact
atcattctgagggttgcggggccagatcctgacctgcagccggtgatgaagttcattgag
agcgagctcccgggaagcaccctgaaagaaaaacacagaaacatgctgcaataccagctt
ccctcctccctcacctctctcgctcacatcttcagcatccttgcgaagaacaaagagttt
ctcaggatagaggactactccgtgtcccagaccactctggaccaggtatttgttaacttt
gccaaggaccaaagtgatgaccattcagacagctccattcgtcgtaaagacacggcggtc
aacatggtcctcctgagccctctgtctactaaagagaacatggagaagccaatagaaagc
ttcgtgtga
DBGET
integrated database retrieval system
