Labeo rohita (rohu): 127175896
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Entry
127175896 CDS
T09007
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04010
MAPK signaling pathway
lroh04210
Apoptosis
lroh04218
Cellular senescence
lroh04620
Toll-like receptor signaling pathway
lroh04621
NOD-like receptor signaling pathway
lroh04622
RIG-I-like receptor signaling pathway
lroh04623
Cytosolic DNA-sensing pathway
lroh04625
C-type lectin receptor signaling pathway
lroh04920
Adipocytokine signaling pathway
lroh05132
Salmonella infection
lroh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
127175896 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
127175896 (nfkb1)
04218 Cellular senescence
127175896 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
127175896 (nfkb1)
04621 NOD-like receptor signaling pathway
127175896 (nfkb1)
04622 RIG-I-like receptor signaling pathway
127175896 (nfkb1)
04623 Cytosolic DNA-sensing pathway
127175896 (nfkb1)
04625 C-type lectin receptor signaling pathway
127175896 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
127175896 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127175896 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
127175896 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lroh03000
]
127175896 (nfkb1)
Transcription factors [BR:
lroh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
127175896 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_5
Ank_4
Death
Motif
Other DBs
NCBI-GeneID:
127175896
NCBI-ProteinID:
XP_050983172
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All DBs
Position
14:complement(19790099..19836443)
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AA seq
933 aa
AA seq
DB search
MAGEDPYHSGYIEQIDPFRDDTIWMTMDSSPFTGIHNNNVMRTAVDGPYLRIVEQPKQRG
FRFRYGCEGPSHGGLPGASSEKNRKSYPQVKICNYQGPARVVVQLVTNTQQPHLHAHSLV
GKQCEKGICIADLQPKDASISFPNLGILHVTKKNVSKVLEERMVEAYKMGYNYGVSIHPD
IDALQGEVRMPRELTDLERNVISSAATVQSKEMDLSVVRLMFTAFLPDSDGGFSRRLEPV
ISDPIYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEDDESGLTW
EAYGDFSPTDVHRQFAIVFKTPKYRDQNLQKPISVFVQLKRKSDNETSEPKPFTYHPQII
DKEEVQRKRQKTLPNFQDYSGAGGGAGGMFRGGGGGSTAGGGPSGGGGGHFFQGYQTYNN
YGSGYNFSGMGGGGTTIKHAYQEPVEDSDEDSDSDNDDDPAAGGVVRIFAQPEPVNLGVA
SENTDPTEELNTTDCVLEPHLAELAGRQAQALFHYAVSGDARMLLGPQRPLMTTQDENGD
TGLHLGVIHSQTDAVRNLAQVISALPGEDILNMRNDLYQTPLHLAVLTQQKEAVEALLEA
EVDVTLTDRHGNTALHLAAQQKEDSVLRLLLKHESVAQLTSIPNTAGLCPLHLAVQANSL
SCVRALLDGGADVEVQELTCGRTALHLATELENLSLTGCLLLEGNAYVDSVTYNGSTPLH
IAAGRDSTKLCALLMTAGADPHKENFEPLFFKDDELCGTCEEDDEEDEGYIPGTTPLNMA
TSPQVYDILNGEEYQPITVVVPPQGDMKSLSSDTKQELCQALEGQTGGWESLAHALGLGI
LTSAFRLSSCPAGKLLDSYEVSGGTVRELVEGLKHVGNSSAVSLLQAVCKEPEVVQTTPQ
FTGPGLYKSIQGLTLGPHQEESGICDSGVETSF
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggctggtgaggatccataccattcagggtacattgaacaaattgacccgttcagagac
gacacgatatggatgaccatggactcgtcaccgtttacgggcatccacaacaataatgtt
atgaggacagcagttgacggaccttatctgcgaatcgtcgaacagccaaaacagaggggc
ttcaggttccgctatggatgtgaaggcccctcccacggaggactcccaggggcctccagc
gagaagaacaggaagtcttacccacaagtgaagatctgtaactatcagggtcctgcacga
gtggtagttcagctggtgaccaacactcaacagcctcatcttcatgctcacagcttggtg
gggaaacagtgcgaaaaaggaatctgcattgccgacttgcagcccaaagatgcaagcatc
agttttcctaatttgggcattttgcatgtgacaaaaaagaacgtaagcaaagttttggaa
gagaggatggtcgaggcctacaagatggggtataactatggcgtatccatccatcctgat
atagatgccctacaaggagaggttcgcatgcccagagaactcacagatcttgagaggaac
gtgattagcagtgcagctactgttcagtcgaaggagatggatctgagcgtggtacggctc
atgttcacagcctttcttcctgatagtgatggaggattctcccgcagactggaaccggtc
atttcagaccccatctatgacagcaaggccccaaatgcctccaatctcaaaattgtgcgg
atggatcggactgccggctgtgtgactggaggagaggaggtctatctgctgtgtgacaaa
gtccagaaagatgatatccaggtgcggttttatgaagatgatgagtcaggtctaacctgg
gaggcctacggggatttctccccgactgacgtccacagacagtttgccatcgtcttcaag
acgcctaaatatcgggaccagaacctccagaagcccatctctgtgtttgtgcagctaaaa
aggaagtcagacaatgaaacgagcgaacccaaacctttcacctaccatccacagattata
gacaaagaagaagtccagagaaagagacagaagactctgccaaacttccaggactacagt
ggagcaggaggtggagctggtggcatgtttagaggaggaggaggaggatctacagcaggg
ggtggtcccagtggaggaggaggaggacatttcttccagggatatcaaacctataacaat
tatgggtctggatacaacttctcaggcatgggaggaggcgggaccaccatcaagcacgca
tatcaagaaccagtggaagacagcgatgaagacagtgacagtgataacgatgatgatccg
gcagcaggtggggtggtgcgaatctttgctcagcctgaacctgttaatttgggagtggca
agtgaaaacacagatcctacagaagagttaaacaccacagactgtgtcttagagccgcat
ttggctgagctagctggaagacaggctcaagctctctttcattatgcagtaagcggtgac
gctagaatgcttctgggtccacagcgccccctcatgaccactcaagatgaaaacggagac
acgggtttacatctgggagtgatccatagtcagacagatgccgtgagaaatctagcacaa
gtcatctcggctcttcccggagaggatatactcaacatgaggaatgatctctaccagact
cctttgcacctagcagtgttgacgcagcaaaaagaggcagtcgaggccttgttggaggcc
gaggttgatgtcacgctcacagatcgccatggaaacacggcacttcacctggcggctcag
cagaaagaggacagcgtgctgcgattgctgctgaagcacgaatcagtggcgcaattaacc
agcatccccaacacagcaggtctctgtccacttcacctggctgtacaggcgaacagtttg
agttgtgtgcgggccctgctggatggtggggcagatgtggaggttcaggagctcacgtgt
ggccgcacagcacttcacctggccacagagctggaaaacctttctctcactggctgtttg
ttgctggagggtaacgcatatgtagatagcgtcacctataacggctcaactcctctgcac
attgctgcaggacgggactcaaccaaactgtgcgcgctcttgatgactgcgggagcagat
cctcataaagaaaactttgaaccactgttcttcaaagatgatgagttgtgtggtacatgt
gaggaggacgacgaggaagatgaaggctatattcctgggacaacccctctgaatatggca
acctccccacaggtgtatgatattcttaacggagaggagtatcagcccatcactgttgtc
gttccaccgcaaggtgacatgaagagcttgagctctgatacaaagcaggagctgtgccag
gcactggaaggacagacaggaggctgggagagtctggctcatgctctgggtcttggcatc
ctgaccagcgcattcagactcagctcctgccctgctggaaagctgctggacagctatgag
gtgtctggaggaacggtgcgtgagctggtggagggactgaagcatgttgggaacagcagt
gctgtcagtttactccaggctgtgtgtaaggagcctgaagttgtccaaaccacgccccag
ttcacaggtccagggctctataagtctattcagggtttgacactgggcccccatcaggag
gagagtgggatatgcgacagcggggtggagacgtctttctag
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