KEGG   Labeo rohita (rohu): 127175919
Entry
127175919         CDS       T09007                                 
Symbol
cul4b
Name
(RefSeq) cullin-4B isoform X1
  KO
K10609  cullin 4
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh03420  Nucleotide excision repair
lroh04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    127175919 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    127175919 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lroh04121]
    127175919 (cul4b)
   03400 DNA repair and recombination proteins [BR:lroh03400]
    127175919 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lroh04147]
    127175919 (cul4b)
Ubiquitin system [BR:lroh04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     127175919 (cul4b)
DNA repair and recombination proteins [BR:lroh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      127175919 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      127175919 (cul4b)
Exosome [BR:lroh04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   127175919 (cul4b)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW Mucin2_WxxW DUF3292
Other DBs
NCBI-GeneID: 127175919
NCBI-ProteinID: XP_050983206
LinkDB
Position
14:9433597..9448202
AA seq 865 aa
MFPTGLPSPNPPPPAQEPRPAASDVHNDSSLTSSKKRKINSSDKEDIDSISSSPKAICNS
SSTTSCSSSSQQQQQQQQHIQKKLRFEDPLDLIGLDVKMAEESCNPAESCSKARNVFLPG
GVGHHANGLTKSAGSATFSNSKPGAAKKLVIKNFKEKPKLPENYTNETWQKLKEAVEAIQ
NSTSIKYNLEELYQAVENLCSHKISAKLYKQLRVVCEDHIKAQIDQFREDALDSVLFLKK
IDKCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDLKVQSKTID
GILLLIERERSGEAVDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRLMQER
EVPEYLHHVNKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTAILQKGLNNLLDEN
RIQDLSLLYQLFSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDH
IIDVCFMKNEKFVNGMKEAFETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLD
KIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGM
FKDMELSKDIMVQFKQHMQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIF
KTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEDIK
LATGIEDSELRRTLQSLACGKARVLTKTPKSKDVEDGDKFSCNDDFKHKLFRIKINQIQM
KETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKK
RIESLIDRDYMERDKENPNQYNYVA
NT seq 2598 nt   +upstreamnt  +downstreamnt
atgtttccaacaggtttaccttcccctaatcccccaccgccagcccaagagcccagaccg
gcagcttctgatgttcacaacgacagtagcttaacgtcttctaagaagaggaaaattaac
agttccgacaaggaagacattgattcaatatcttcgtctcctaaagccatttgtaattcc
tcctctacaacgtcctgctcttccagttcacagcagcagcagcagcaacaacaacacatc
cagaagaagttgaggttcgaggacccgctggatttgatcggactggatgtgaagatggcc
gaggagtcgtgtaaccctgctgagtcgtgttcaaaggcgagaaatgtgttcctgcccgga
ggtgtcgggcatcacgctaacggactgaccaagtctgcgggctccgccaccttctccaac
agtaaacccggtgctgcgaagaaacttgttatcaagaactttaaagaaaagcccaaatta
ccggagaattacacaaatgagacctggcagaagctgaaggaggcagtagaggccatacag
aacagcacttcaataaagtacaatctagaggagctctatcaggctgttgaaaacttgtgc
tcccataagatatctgccaagctctataaacagctcagagtggtctgtgaagaccatatc
aaggcgcagattgaccagttcagagaggatgccctagacagtgttcttttcctcaagaaa
atagacaaatgttggcaagatcactgcagacaaatgatcatgattaggagtatatttttg
tttttggatcgcacatatgttttacaaaattcaatgctgccatcaatctgggacatgggc
ttggagttgtttcgtttctatatcatcagcgacctgaaggtgcagagtaagacaatcgat
ggcattctgcttcttattgagagagagcggagtggagaggccgtagaccgcagtctcctg
aggagtcttctgagcatgctctcagatctgcagatttatcaggattcatttgagcagcgc
tttctggaggagacaaatcggctgtatgctgcagagggccaaagactcatgcaagaaaga
gaggtaccagagtatcttcatcatgtcaacaaacgtctggaagaggaggcagatagagtc
attacatacttagaccagagcacacaaaaacccctcattgccacagtggaaaagcaactt
cttggagaacacctcactgcaatacttcagaaaggtttgaataacctgctggatgagaac
cgtattcaggatctgtctctgctgtaccagctcttcagtcgtgtgagagggggcgtgcag
gtgcttctacagcactggatcgagtacatcaaggcttttggaagcacaatcgtcatcaac
ccagagaaagacaagacgatggttcaggagcttttggatttcaaggataaagttgatcac
atcattgatgtgtgtttcatgaagaatgaaaagttcgtaaatggcatgaaggaggccttt
gagacatttatcaacaaacggccaaacaaacccgcagagcttatagcaaaatatgtggat
tcaaagctccgtgctgggaacaaagaagcaactgatgaggaactcgagaaaatgttggac
aagataatgatcatattcaggttcatttacggcaaagatgtttttgaggccttctacaag
aaagacttggcgaagaggttactggtgggaaagagtgcctctgtagatgcagagaaatca
atgctatcgaaactgaagcatgaatgtggagctgcatttaccagtaagctggaaggaatg
ttcaaagacatggagctctcaaaagatattatggtacagttcaaacagcacatgcaatgc
caaaatattcccgggaacattgagctgacggtgaacatccttactatgggttactggcca
acatacgtccccatggaagtacatctgcctccagagatggtgaaattgcaggagattttc
aaaacattttacctgggcaaacacagtggacggaagctacagtggcagtctacattagga
cattgtgttttaaaggcagaattcaaagagggcaaaaaagagctgcaggtttccctgttt
cagacgttagttctgctgatgtttaatgaaggggaggagttctctctggaggatattaaa
ctggctacaggcattgaggacagtgagctgaggcggactctgcagtcattggcctgcggg
aaggcacgtgtccttaccaaaaccccaaagagtaaagacgtggaggatggagataagttc
tcttgtaatgatgatttcaaacacaaactcttcaggattaaaatcaaccagatccagatg
aaagaaacggtggaagagcaagccagcactacagagagagtattccaggatcgtcagtac
caaatcgatgctgccattgttcgaatcatgaagatgaggaaaactctcagccataatctt
ctggtctctgaagtgtacaaccaacttaaattcccagtcaagcctgctgatctgaagaag
aggatagagtcgcttattgacagggactacatggaaagggataaggagaatcccaatcaa
tacaactacgtggcttaa

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