Labeo rohita (rohu): 127176002
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Entry
127176002 CDS
T09007
Symbol
cstf2
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 2
KO
K14407
cleavage stimulation factor subunit 2
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127176002 (cstf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127176002 (cstf2)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
127176002 (cstf2)
U7-dependent histone pre-mRNA processing factors
127176002 (cstf2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
DUF8400
RRM_Rrp7
Motif
Other DBs
NCBI-GeneID:
127176002
NCBI-ProteinID:
XP_050983357
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All DBs
Position
14:complement(14235120..14248347)
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AA seq
507 aa
AA seq
DB search
MANSAVAAVAAAARDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRET
GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIES
PYGDGCTPEEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALL
QAQVVMRIVDPEIALKMLHRPAVVQPLNPSPQPGAVPVPNQPLAQPNVPVSQPQPMPGMH
VNGAPQMMQPPQMGGGVPGPMPGQGPMGPAGGMQPQIGIPPGGPVPMDRGPGTLQDSPVG
AAGQAAIERPQVPIVDPRAPMRGAPQGPPGIPPRGLLGDGPNDPRGGSLVNVTGEMVEPG
HGYIGGPPQHQGPPMHMAPPDMRGPHDMRGGPMMGEPRGPMMEQRGPPMEARGRDPRAVD
ARGPISSQRVPVAAGMQGPPPHGMGQSAPPAARPGPTSDVSSQDHEKAALIMQVLQLTPE
QIAMLPPEQRQSILILKEQIQKTAGAP
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggcgaattcagcagttgcagcggtagctgcagctgccagagaccctgccgtggaccgc
tcgttacgctcggttttcgtgggaaacatcccatatgaggccacagaggagcagctgaaa
gacatcttctcagaggttggacttgtcgtcagttttaggttggtgtatgacagagaaaca
ggtaagccaaagggatatggcttttgtgagtaccaagatcaggagacagcactcagtgcc
atgcgcaacctcaatggccgagagttcagtggcagagctttacgtgtcgacaacgctgct
agtgagaaaaataaagaggagcttaaaagtctgggcactggtgcaccaattattgagtcc
ccatatggagacggttgcacaccagaagaagctccagagtctatcagcagggcagtagcc
agtttgcctcccgagcagatgtttgagctaatgaaacagatgaagctatgtgtgcagaac
agtccccaggaggccaggaacatgcttctgcagaaccctcagctcgcttatgccctgctg
caggctcaggtggtcatgaggattgtggaccctgaaattgctttgaaaatgcttcaccga
ccggctgtggttcagcccttaaacccaagtcctcagcctggagcggtaccggtacctaac
cagccccttgctcagcccaacgtgcctgtctctcagcctcagccaatgccaggtatgcat
gtgaacggagcccctcagatgatgcagcctccacagatggggggtggagtacccggacca
atgccaggacagggacccatgggaccagctggtgggatgcagcctcagatagggatccct
ccaggaggccctgtgcccatggatagaggaccaggaacccttcaggactctcctgtggga
gcagccgggcaggctgctatcgagcgacctcaagtgccgatagtagacccacgtgccccg
atgcgaggggcccctcaaggccctccagggatcccacccagaggccttcttggcgatggt
ccgaacgacccacgaggtggatcgttggttaatgtcactggagaaatggtggagccaggg
catggttacattggaggccctccacaacatcaggggccgcccatgcatatggcgccccca
gacatgcgtggccctcatgacatgagaggaggacccatgatgggagaacctagaggtcct
atgatggagcagcgtggtccacccatggaggcaagagggcgtgatccaagagctgttgat
gctcggggtccgatatccagccagagggttcctgtggctgccggaatgcaaggtcctccc
ccccacggcatgggacaaagtgcgcctccagcagcaagaccaggtcctacatcagatgtg
tcctcacaagaccacgagaaagctgccttgattatgcaagtcctgcagctgacccctgaa
cagatcgccatgctaccaccagaacaaagacagagtattttgatattgaaggagcagatt
cagaagacagcaggcgcaccctaa
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