Labeo rohita (rohu): 127176034
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Entry
127176034 CDS
T09007
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
127176034 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lroh01009
]
127176034 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lroh04515
]
127176034 (pcdh20)
Protein phosphatases and associated proteins [BR:
lroh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127176034 (pcdh20)
Cell adhesion molecules [BR:
lroh04515
]
Cadherins
Protocadherins
127176034 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_pro
DUF1180
Motif
Other DBs
NCBI-GeneID:
127176034
NCBI-ProteinID:
XP_050983413
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All DBs
Position
14:complement(30193173..30199420)
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AA seq
832 aa
AA seq
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MNWIILRLVLLLASAGQIHSRAALRFTTLEEQEAGVKIGSLSTTYSAPYQLLNERYIKVD
KSTGDLFTKERIDRETLCPSHQDGDCTFIDTAVVSLNSEIVKLIIVVDDINDNAPIFERN
EIPLHIPEDASIGTAFPLDDQAQDKDTGNNGLIHYHLKDSGGFFAIRQDGHELELVVLRE
LDRETQENHILVLVAVDGGSVPLSATANLSVTVTDVDDNCPEFDTDSPVTAIVPALGIKG
SAVAQLKATDKDLGQNAQITFSFSRQISDRAKALFHLDEHTGLISLAVDIQVDSPEEHML
KVLANSPLCPPVQTQVAIYIQPVTSPEPSIRIRFVTEHKNQVIVLQENEPPTVLALLELE
DTSAAKGTLSLDEDSMPFSLKPQAGSYLLSTSKPLDFEMCREYNVTLIISDPHGTRLHRR
EVIKVAVEDVNDNAPKFEQTHYEKDIKENNEPGEFLLKVQATDADSYQFGKVRYRLTNRG
PFRIHEETGVISVAESLDREQQETYILTVLAWDGGEPSQEGFATVSIHILDLNDNPPAFS
TPHFYFFVSESIPQLSQVGKVTVSDADKGGNGLIVDVRILSENVPFAMDLAQGSLRSTGE
VDREKQDRYDLLVVAVDGGSPALSTTVKMTIFIEDVNDNQPQVLLPSSNLSCLTISPATR
EGSMITKIYAIDEDSGMNSDITYQIIATKPALHSPFQIDQQSGNITLVQHLRGEDYGMHH
LFVVVRDGGKPDPLQTTVWINLLVNETLEKCHVNAVPDYLPPRLPPPMPVKDCRCESKAW
LIFYCGLCLMVISVCVLLAVVVVFIKCKKRKRKVEKKTVWETGNLCELKPLN
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgaactggattatactacggttggtgcttctcttggcatctgctgggcaaatccatagc
cgtgctgcgctgcgtttcaccaccctggaggagcaagaagcaggtgtgaagatcggaagt
ctaagcacaacctactcagctccataccagctccttaatgaaagatacatcaaggtggac
aagagcacaggggatctgttcactaaagagcgcatagacagagagactttgtgtccatca
catcaggatggggactgtacttttatagatactgcagtcgtaagtcttaattctgaaata
gtgaaactgataatagttgtggatgatattaatgacaacgctcctatttttgagaggaat
gagattcctctacacatacctgaagatgcatcaatagggactgctttcccactggatgac
caagcgcaggataaggatacgggaaataatggcttgatacattaccatttaaaagactct
ggcggcttttttgccatcagacaagatgggcatgaacttgagctggtggtacttagggaa
ctggaccgggaaactcaggaaaaccacatcttggttcttgtagcagtagatggaggttca
gtaccacttagcgctacagctaatctcagtgtaactgtaactgatgttgatgacaactgc
ccagagtttgacaccgacagccccgtcacagccattgtgccagcattgggaatcaagggg
tctgcggtggcacagcttaaagccacagacaaagacctgggccaaaatgcccagatcaca
ttctccttcagccgtcagatctcagacagggccaaagcgctctttcacttggatgaacac
acaggcctgatcagtttagctgttgacatacaggttgacagtcctgaggagcacatgttg
aaagtccttgcgaatagcccactttgcccccctgtgcaaactcaggtagctatatacatt
cagccagtgacgagcccagagccatccataaggatcaggtttgtcactgagcataaaaac
caagtgatcgtgttacaagaaaacgaaccccccaccgtcttggccctcttggagctggaa
gacacctctgctgctaaaggtactctatccttagatgaagacagcatgccgttttctttg
aagccgcaagcaggcagctatttgctttcaacatcaaaacccctagattttgagatgtgc
agagagtataacgttacacttattatttctgatcctcatggcacacgcctacacagaagg
gaagtgatcaaagtggcggttgaagatgtgaatgataatgccccaaagtttgaacagaca
cactatgaaaaggacatcaaggagaacaacgagcccggagagtttctgctgaaagtccag
gctaccgacgcagacagctatcagtttggcaaagtaaggtacaggcttacaaacagagga
ccttttagaattcacgaagagacaggtgtgatatcggtagctgagtctttagatagagaa
cagcaggagacatacatcttgaccgttctggcctgggacggcggcgaaccgtctcaggag
ggctttgctactgtgtctatacacatactggatctgaatgacaatccaccagccttttca
accccacatttctatttttttgtgtctgagagcattccacaactttcccaagttgggaaa
gtcacagtaagcgatgctgataaaggaggcaatggcctgattgtggatgtgcgtatttta
agtgaaaatgtcccttttgccatggacctggcgcaaggatcactccgcagtactggtgaa
gtcgaccgtgagaagcaagaccgctacgacctgctggttgtagccgtagatggcggcagt
ccagccctttccaccacagtaaaaatgaccatttttattgaggacgtcaatgataatcaa
ccccaggtccttcttcctagcagcaacctctcctgtctgaccatatccccagctacccga
gaaggaagcatgataacaaagatttacgccatcgatgaggattcaggaatgaactcggac
atcacttaccaaataattgcaaccaaaccagctctccacagccccttccagattgaccag
cagtcaggaaacatcaccctagtccaacatcttcgcggcgaggactacggcatgcaccac
ctcttcgtagttgttcgcgacggaggaaagccagacccactgcagactaccgtgtggatc
aacctgctggtcaacgagactttggaaaaatgtcacgtgaatgccgttccggattacttg
ccaccacgactgcctcctccgatgcctgtcaaagactgcagatgcgaatcaaaggcctgg
cttattttttattgtggcctgtgtctgatggtcatctcagtctgtgttctcctggcggtt
gtagtggtgtttataaagtgcaaaaaaagaaaaaggaaagtggaaaaaaagactgtatgg
gaaactggaaatctctgtgaactgaaacctttaaactaa
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