Labeo rohita (rohu): 127176132
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Entry
127176132 CDS
T09007
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03013
Nucleocytoplasmic transport
lroh03015
mRNA surveillance pathway
lroh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127176132 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
127176132 (acin1a)
03015 mRNA surveillance pathway
127176132 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127176132 (acin1a)
03041 Spliceosome [BR:
lroh03041
]
127176132 (acin1a)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127176132 (acin1a)
Spliceosome [BR:
lroh03041
]
Complex C
Other components
EJC/TREX
127176132 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
Motif
Other DBs
NCBI-GeneID:
127176132
NCBI-ProteinID:
XP_050983581
LinkDB
All DBs
Position
2:complement(27397565..27416647)
Genome browser
AA seq
1811 aa
AA seq
DB search
MADLEDVTLDGRPLHSLRVADLKAALEERGLPKSGQKNALVKRLKGALMLENLQKTSTHH
IGLQPNSRIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAAETDGTDHEDHAEANDSIC
AASNQDVAPSLVDQHKGGSAVAGGFGSESDELREKETPGQPSPSAPAQPGAIASLSVRVV
GERGPTSSHVPADSDDDSEGGDDNDDEEEEWNAKAQRSRRAQPPRNQPVRERSGGSQQQQ
QPPPQHIPLLSQQLRQPTPPPSPPPELSFPLPDTPKQSPPSPGEPPSRQRISSSSSSGSS
SSDSRSSSPEPAGDSSERRPGPLTLLARKMESEGAFSGAGKRDREGMDGQRSHHEGAVSA
ITHTANAASVLSYPSSVISNQGVSVVRTAVMEESDGMKQDEGSHLLWEKDNKKRERQREQ
ERLKALEKEREEKEKALEEERARVLERERQEREEALKRERALQREREEKEKALQREREER
ERLERERLEREQALERERQEALERERLERERLEKERQEREQALERERLERERLEKERQER
EEALERKRLEKERLEKERLEREAALERERLEKERLEKERLEREAALERERLEKERIEKER
LEREAALERERLEKERLEKERLEREAALERERLEKERLEKERREREEALERERLERERLE
KERQEREEALERERLEKERLEKERQEREKALERERLERERLEKEKQEREQALERERLERE
RLEKERQEREEALERERLERERLEKERQEREEALERERLEKERQERERQEKEQALERERQ
EKERQEREQALERERLEKEAALEKERQEMERAKEQERLEKERALEKAAALERKRQEQERL
EKEKALEEERLQKEQALEREREAQRKAEEERERALEKEREEQERALKEEQQRALEEKERL
LEQKRVQEEKEKALKHEKEEEREKERESRLPPWKRGRDISGLSYPAVQSASLESPSEKPD
ESETGEPQSAGKDAQSTEPIPQQSPTPPTPLSPQSSSKKSRFLRDAPGTTPLPSSPSSVL
KRPRTFSDSPMPQAPSVPLVSKPEEKDAAQSPQTSSVLVSAPHELESKTPEVSARQQAPQ
DEEKMETSEDKEASKDTKHKTLRSVEDEEKTPLPPPEEKKRGRERKKKEVGKKERKSSSS
SDSSSSDSDSGSSSSSRSSSSSSSEEEKSRSTSGGRKSKEVQKDSSSQATEKVGQTAEKP
PTAQRKKRVFTEQEEKDMRNEDVIQTKKPCLELQDEKVTRGRKDDVDEDDTNKDTTSSEV
KEAVMAEPEKVPESSEESTTPKTFSARRISLGSSKQSPGVVSSEGEAEAASSAGAGRKRR
WGSSTAVTAKKPSISITTDSLKSLIPDIKPALGQEAVLDLHPEEMHLSGEEEGGERGDQD
LKIRRTVTQVVPSDTQENGQKESKRSEHEDEEERSEGQDRLSQEEKMEGSIQVSMETEPS
SPGRDVDMKTVTPSDTLIRRSISQQKTGVSITIDDPVRTAKQPSPPRGKLSNIVHVCNLV
RPFTLGQLKELLNRTGTVVEEGFWIDKIKSHCYVTYSSAEEAMATRTALHGVKWPQSNPK
FLSVDFCSQEELDFHRGLGPAGEKPTEEPRGAAAAGPGRPVPPPLLPERDQWAEREREME
RRERTRAEREWDRDKVRDFSKAGEEREAGARRSRSRDRERRRKERGKSKERKTDKKEKGP
EDPPAKLLDDLFRKTKAAPCIYWLPLTEEQAAQRAAARAERMREREKRRKEMEEEDKKRE
EERRERMKAGGAAGGEGERDRDRERDRDRGREREREGDKRKEGYRRPGGNSASGSRRSRS
RSDPPPRDRRH
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacgctggacgggaggccgctccattcgctccgggtggcg
gatttgaaggcggcattggaagagagagggcttccgaaaagcggacagaagaatgctctc
gtcaagaggctcaaaggggctctcatgttggagaaccttcagaaaacctctactcatcac
attggcctgcagcctaactcccggattggggaggaaatgagtcagaacagcttcattaaa
cagtacctggccaaacaacaagagcttctcaggcagcgcttggagagagaagcgcgagag
gcagctgaaactgacggaacagaccatgaagaccacgcagaggccaatgacagtatttgt
gctgcttctaaccaggatgttgctccctccttagttgaccaacacaaaggaggttcagca
gtagctgggggatttgggagtgagagtgatgagctgagagaaaaagaaacgcctgggcag
ccatctccctccgcacctgcccagcctggcgcaatagcctctttatctgtgcgggttgtt
ggtgaaagaggaccaacttcaagccatgtacctgctgacagtgatgatgacagtgaaggt
ggggatgacaatgatgacgaggaggaggagtggaacgccaaagctcaacggagtcgtcga
gcacagcctccaagaaaccaaccggtgagggaaagatctggtggctcgcagcaacagcag
cagccgcccccccaacacatacctttactatcacagcagcttagacagcccactcctccc
ccgtcccctcctcctgaactctcttttccactcccagacacccctaaacagagcccccct
agtcctggagagcccccatctaggcagcgcatatctagctcttcgagctctggtagttca
agtagtgacagtcgtagcagtagccctgaaccagcaggagactcctcagagcgcagacca
ggcccactgaccttactggcacgcaagatggagtctgagggagctttctcgggggcagga
aagcgtgatagggagggaatggatggacagagaagccaccatgaaggagctgtgtctgca
attacccacacagctaatgcagcgtccgttttgtcataccctagttcagtgatttccaac
cagggtgtaagtgtcgtgaggacagcggtgatggaagagagtgatggcatgaagcaggat
gagggtagccatcttttatgggagaaagacaacaaaaagagggaaagacaacgagaacaa
gagagactgaaagccctagaaaaggagagagaggaaaaggagaaggcattggaagaagag
cgagcaagagttttggaacgggaaagacaggaacgagaagaagctttgaaacgcgagagg
gctttgcagcgagaaagggaagagaaagaaaaggctttacagcgggagagagaagagagg
gagaggcttgaaagagaacgactcgagagagaacaagccctggaacgagagaggcaggaa
gctttagagcgggagagattagagcgagagaggctggagaaggaaagacaagaacgagaa
caagccttagagcgggagagactcgagagagaaagacttgagaaagaaagacaagaacga
gaagaagctctagaaaggaagagattggagaaggagcggcttgagaaggaaagactagaa
agagaagctgctctagagagggagagattggagaaagagcggcttgagaaggaaagacta
gaaagagaagctgctctagagagggagagattggagaaagagcggattgagaaggaaaga
ctagaaagagaagctgctctagagagggagagattggagaaagagcggcttgagaaggaa
agactagaaagagaagctgctctagagagggagagattggaaaaagagcggcttgagaag
gaaagacgagaacgagaagaagctctagagagggaaaggttggagagagagcggcttgag
aaggaaaggcaagaacgagaagaagctctagagagggaaaggttggagaaagagcgcctt
gagaaggaaaggcaagaacgagaaaaagctctagagagggaaaggttagagagagaacgg
cttgaaaaggaaaaacaagaacgagaacaagctctagagagggagcgattggaaagagag
cggcttgagaaggaaagacaagaacgagaagaagctctagagagggagagattggagaga
gagcggcttgagaaagaaagacaagaacgagaagaagctctagagagggagcggcttgag
aaggaaaggcaggaacgagagaggcaagaaaaagaacaagctctagagagggagaggcag
gagaaagaaaggcaggaaagagagcaagccttggagagagagagactggaaaaagaagct
gctttggagaaagagagacaagaaatggagagggccaaagaacaggaaaggctggagaaa
gagagggctttggaaaaagcagccgctctggaacgcaaaaggcaagagcaagaaagactt
gagaaagagaaagctttggaagaagaacggttgcagaaagaacaagctcttgagcgtgag
agagaagcgcagagaaaagcagaggaggagcgagagcgagctttggaaaaagagagagag
gaacaggagagggctttaaaagaagagcagcagagagccttggaggaaaaggaaagactt
ctggagcaaaaaagagtgcaggaggaaaaggaaaaagctttgaagcatgaaaaagaggag
gaacgtgagaaagaaagagaaagccgtcttcctccgtggaagcgtggtcgtgatatcagt
ggtctttcttatccagcggtccaatctgcttctctggagagtccgtcggaaaagccagac
gagagtgagactggagaaccgcagagcgctggcaaagatgctcaatctacagagcctatc
ccgcaacagtcacccacacctccaacaccactatcccctcagtcttcttctaagaaatcc
cgcttccttagagatgctcctgggacaactcctctcccatcctctccaagttctgtgctg
aagagacctcgcactttctcagacagtccgatgccacaagccccctcagttccgttagta
tctaagcctgaggaaaaagatgcagctcagtctcctcaaacatcatcagtccttgtttca
gcaccccatgagcttgagagcaagactcccgaagtgtctgcccgacaacaggcaccacaa
gatgaagagaagatggagacttcagaggataaagaggcaagcaaagacactaaacataag
acacttagaagtgtggaggatgaggaaaaaactcctttaccccctccagaggagaagaaa
agaggaagagaaaggaaaaagaaagaagtggggaagaaagaaagaaaatcatcatcctcc
agcgattcctcctcatccgactcggattctgggtcttcatcctcctcacgttcctccagt
tcatcatcatcagaggaggagaaaagtcgttccacttcaggcggtaggaagtctaaagag
gtccagaaagattcttcatctcaggccacagaaaaagttggtcaaactgctgaaaagcct
cctacagcccaacgcaaaaaacgagttttcacagagcaggaggaaaaagacatgcgcaat
gaggatgtcatccaaaccaagaaaccctgccttgaactacaagatgagaaggtaacaagg
ggaagaaaggacgatgttgacgaagatgacactaacaaagacactaccagtagtgaggtg
aaggaggctgtcatggcggagcctgagaaggttcctgagagcagtgaggagagcaccacg
ccaaagacattctcggcccgaaggatttctcttggcagcagcaaacagtctcctggggtg
gtgagttcagagggggaagcggaggccgcaagcagtgctggcgctggcaggaagaggaga
tggggctccagtaccgctgtcactgccaagaaaccctcaatcagtataaccacagactct
ttgaagtctttaataccagacatcaagcctgctttgggtcaggaggctgtgttagacctg
catccagaggagatgcatctttctggggaggaggaaggaggagagaggggcgaccaagat
cttaaaattagacgaactgtaacacaggttgtgccctctgacacacaagagaatggacag
aaagaatctaaaagaagtgaacatgaggatgaggaagaaagaagtgaagggcaggataga
cttagccaggaagaaaaaatggaaggctccattcaggtttccatggagacggagccatca
tcccctgggcgagacgttgatatgaagacagtcactcccagtgacacactgattcggcgt
tccattagccagcagaagacaggcgtgagtatcaccatcgacgacccggtccgcacagcc
aaacagccctctcctcctcgtggcaagctgtctaacattgtccatgtctgcaacctggtg
aggccgtttacccttgggcagttgaaggagctgttgaaccgcacagggactgtagtggag
gaaggtttctggattgacaagattaaatctcactgttacgtcacatactctagcgcagaa
gaggcgatggctactcgtacagcactacatggggttaaatggccccagagtaaccctaag
ttcctcagtgttgatttctgctcgcaagaggagttggacttccacaggggtttgggtcca
gcaggagaaaagccaacagaggagcctcgtggggcggcagccgctgggcctggccgtcca
gtacccccgcctctcctaccagagcgtgatcagtgggcagaacgagaaagagaaatggaa
aggagggagagaacgcgtgcagagagagaatgggacagagataaagtgagagacttcagc
aaagctggagaggagcgggaagctggggccagaagatcacgttcacgggatcgtgagaga
cggcgcaaagaaagagggaagagcaaagagaggaaaacggataagaaggaaaaaggacca
gaggatccacctgctaaactgctggatgacctcttccgcaaaaccaaagcggctccatgc
atatactggctccccctcactgaggagcaggcagcacagagggcagcggctcgtgccgag
cgcatgagggaaagagagaagaggaggaaggagatggaagaggaggataagaaacgtgag
gaggagcgacgagagcggatgaaggccggcggagccgccggaggggaaggtgagagagac
cgtgacagagaacgagaccgagacagaggtcgagaacgggagcgagagggggataaacgg
aaggagggataccgcaggcctggcggaaacagcgcaagcgggagcaggaggtcacgaagc
cgcagcgaccctccgcccagagatcgacgacactaa
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integrated database retrieval system
