Labeo rohita (rohu): 127176133
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Entry
127176133 CDS
T09007
Symbol
pcdh19
Name
(RefSeq) protocadherin-19 isoform X1
KO
K16499
protocadherin delta 2
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lroh04515
]
127176133 (pcdh19)
Cell adhesion molecules [BR:
lroh04515
]
Cadherins
Protocadherins
127176133 (pcdh19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_3
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
127176133
NCBI-ProteinID:
XP_050983578
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Position
14:complement(13685127..13745495)
Genome browser
AA seq
1094 aa
AA seq
DB search
MHSKDMDFVQMFLCFLLCWTGVDAVYNLKYTVEEELRAGTKIANVTADAKNAGFALGNRQ
PYLRVISNSEPRWVNLSPAGLLITKQKIDRDAVCRQTPKCFISLEVMSNSMEICVIKIEI
IDVNDNAPRFPTNHIDIEISENAAPGTRFPLEGASDPDSGSNGIQTYTITPNDIFGLEIK
TRGDGSKIAELVVEKTLDRETQSRYTFELTAEDGGDPPKSGTVQLNIKVIDSNDNNPVFD
EPVYTVNVMENSPINTLVIDLNATDPDEGTNGEVVYSFINFVSNLTKQMFKIDPKTGVIT
VNGVLDHEELPVHEIDVQAKDLGPNSIPAHCKVIVNVIDINDNAPEIKLLSENSEMVEVS
ENAPLGYVIALVRVSDNDSGANGKVQCRLQGNVPFRLNEFESFSTLLVDGRLDREQRDMY
NLTILAEDSGYPPLRSSKSFAVKVTDENDNPPYFTKPHYQAMVLENNVPGAFLLAVSARD
PDLGMNGTVSYEIIKSEVRGMSVESYVTVNSNGEIYGVRAFNHEDTRTFEFKVSAKDGGD
PPLTSNATVRIVVLDVNDNTPVMTTPPLVNGTAEVSIPKNAGVGYLVTQIKADDYDEGEN
GRLTYSISEGDMAYFEIDQINGEVRTTKTFGENAKPSYQITVVAHDHGQTSLSASAYIVI
YLSPDLNAQEQIGPVNLSLIFIIALGSIAVILFVTMIFVAVKCKRDNKEIRTYNCSFLYL
RRVAEYSYGNQKKSSKKKKLSKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTL
PLGCRRSESTFLNVENQNSRNAAPNHGYHHTFTGQGPQQPDLIINGMPLPETENYSIDSS
YVNSRAHLIKSTSTFKDMEGNSLKDSGHEESDQTDSEHDVQRGHYADTAVNDVLNMTAPP
NNSQLPDQDQSEGFHCQDECRILGHSDRCWMPRVPMPARAKSPEHGRNVIALSIEATTVD
VPHYEDCGTTKRTFATFGKDGPDEERAEQRGRRQTAEPAVCSPKTNGTVREAGNGREAVS
PITSPVHLKSPQSKPPSTYNTLKCRDAERIANHSLLRQPEGKDSEPAMREINTLLQDGRE
KESPGSKRLKDIVL
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgcattccaaggacatggatttcgtacaaatgtttttgtgctttctcttgtgctggact
ggagtcgatgccgtttacaatttgaaatacaccgtggaagaagagctgcgggcaggcaca
aagatagccaatgtgacggcggacgcaaaaaatgcgggttttgcactgggaaaccgacag
ccttacttgcgggttatctccaattccgagccgcgatgggttaatctgagccccgccgga
ctgctcatcacaaagcaaaaaattgatcgggacgctgtttgcagacagacaccgaagtgt
tttatttcgttggaggtgatgtcgaactcgatggagatctgcgtgattaaaattgagatt
atcgacgtaaacgacaacgcgccccgcttccccaccaaccacattgacatagaaatctcg
gaaaatgccgctcccggtaccagatttcccctagagggggcaagcgatccggactccggg
agcaacggcattcagacgtacacgattacccctaatgatattttcggtcttgagattaag
acgaggggagacgggtccaaaatcgcagaacttgtggtggaaaagactttagaccgagag
acgcagtctcgctacacgtttgaactcacagcggaggatggtggagaccccccaaagtct
gggactgtgcaactcaacatcaaagtcattgactcgaacgataacaaccccgttttcgac
gagcccgtgtacactgtaaacgtgatggagaattctcccattaacacgttagtcatagac
ttgaacgctacggacccagacgaaggaaccaatggcgaggtggtctactcattcataaac
ttcgtctccaacctgaccaaacagatgtttaaaatcgaccccaaaacaggtgtgataaca
gtgaacggcgttctggaccacgaggaactgcccgtccacgaaattgacgtacaagccaaa
gatctgggtccaaattcaatccctgcccactgcaaagtgattgttaacgtaatcgacata
aacgacaacgcgccagaaatcaaactgttgtcggaaaacagcgagatggtagaggtgagc
gaaaacgctcctctcggatatgtaatagccctggtgagggtctcagacaatgattcggga
gcgaatggaaaagtgcagtgcagactgcagggcaatgtgccttttagactcaacgagttt
gagagcttctctaccttacttgttgatggccgtctcgatagggagcagagagacatgtac
aatttgaccattctagccgaggacagcgggtaccctccgctcagaagctcgaaatcgttc
gcagtgaaagtaacggatgagaacgacaatcccccgtacttcaccaagccacactatcaa
gccatggtgctcgaaaataacgtcccaggtgcgtttctgctggcggtgtccgccagggac
cctgacctgggcatgaacggcacggtgtcctacgaaatcatcaaatccgaggtgcggggc
atgtctgtggaatcttacgttacagtgaactcgaacggcgaaatatacggcgttagggct
tttaatcacgaagatacgcggacctttgagtttaaagtctctgcaaaggatgggggagat
ccacctttgaccagcaacgccaccgtgcgcatcgtcgtactggatgtaaatgacaacaca
cctgtgatgaccaccccgcccctggtgaacggcaccgcggaggtgtccattcctaaaaac
gctggagttggttatttggttacacaaataaaagctgatgattacgatgagggggagaac
ggaaggttaacgtattcaatttcagaaggagacatggcatactttgaaatagaccagata
aatggcgaggtgcgaaccacaaagacgttcggggagaatgcgaaaccatcctatcaaata
accgtggtggcgcacgaccacggccaaacttctctatctgcctctgcctatattgtcatt
tatctctctcccgatctcaatgcacaggagcaaatcggacccgtcaacctgtcgctcatt
ttcataattgccctgggttctattgcagtcatcctctttgtcacaatgatctttgtggca
gtcaagtgcaaaagggataacaaggaaatccgaacgtacaactgcagtttcttgtacctg
cgcagggtggcggagtactcctacggcaaccagaagaagtccagcaagaagaagaagctg
agcaagaacgacatccggctggtgccgcgggacgtggaggagacggacaagatgaatgtg
gtgagttgctcgtctctcacctcttcgctcaactacttcgactaccaccagcagactctg
ccgctgggctgcaggcgctccgagagcaccttcctcaacgtggagaaccagaactccagg
aatgctgcacccaaccatggctaccaccataccttcacagggcagggccctcagcagcct
gacctcatcatcaacggcatgccgctgcctgagacggagaattattccattgactccagt
tatgtaaacagcagagcacacctaattaaaagcacgtcaacattcaaggacatggaagga
aacagtctgaaggacagtggccacgaggagagcgaccaaaccgacagcgaacatgacgtt
cagagagggcactacgccgacacagctgtcaacgacgtgctgaatatgaccgcacccccc
aacaactcgcagctacctgaccaagatcagtcagagggtttccactgccaagatgaatgt
cgtatcctgggccactcggaccgctgctggatgccccgagtgccgatgccggcgagagcg
aagtctcccgaacacggccgcaacgtcatcgccctgtccatcgaggccaccaccgtggac
gtacctcactacgaggactgtggcaccaccaaaaggacttttgccacctttggcaaagac
gggccggacgaggagcgggccgaacagaggggcaggcggcaaacagcggagccggccgtc
tgcagccccaagaccaacggcacagtgcgcgaggccggaaacggccgggaggccgtcagc
cccatcacctccccggtgcacctgaagagcccccagtccaaaccgccctccacctacaac
acgctgaaatgccgggacgcagagcgcatagccaaccacagcctgctgcggcagccggag
gggaaggacagtgagccggccatgcgggagatcaacacgctcctgcaggacggccgtgag
aaggagtcccccggcagcaagcggctgaaggacatcgtgctttaa
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