Labeo rohita (rohu): 127176170
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Entry
127176170 CDS
T09007
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03273
Virion - Lassa virus and SFTS virus
lroh04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
127176170 (pcdh11)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
127176170 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lroh01009
]
127176170 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lroh04515
]
127176170 (pcdh11)
Protein phosphatases and associated proteins [BR:
lroh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127176170 (pcdh11)
Cell adhesion molecules [BR:
lroh04515
]
Cadherins
Protocadherins
127176170 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Ig_Cad99C_N
Cadherin_FAT4_N
Cadherin_2
Ig_CLSTN
Fibulin_C
TMEM154
Prominin
DUF6249
Motif
Other DBs
NCBI-GeneID:
127176170
NCBI-ProteinID:
XP_050983636
LinkDB
All DBs
Position
14:complement(5103659..5351631)
Genome browser
AA seq
1244 aa
AA seq
DB search
MRTLQIFEESAAPTLSMDLASEAHVLVVLLTCLFLMCRAQEKDYTVKEEQPENVRIGNLR
KDLNLNLDPDIKLSSALQFKPVYKTGDVPLVKVEASTGEIFTTANRIDREKLCSGVFNEK
RCFYEIEVAVLPDEIFRLVKIRFLIEDINDNAPLFQSTVINISIPENTAINSRYPVPSAF
DPDIGINGIQHYELVKSVSEFGLDIIETPEGDKWPQLIVQQSLDRETKDTFVMKIKVEDG
GTPPKSSTAILQVTVSDVNDNRPVFKDSEVEVNVPENAPMGTSVTHLHATDADLGSNAQI
QFSFSNQISPATKRHFAIDSTTGLITIKQPLDREVNPVHKLIVLASDGSSTPSRATVIVN
VTDINDNVPSIDTRYIMNLVNGTVLLSENAPLNTKIALITVTDRDADLNGKVTCYTDHDV
PFRLKPVFNDQFLLETAAPLDYETTREYAIRIVASDSGKPPLNTSAMVLIKIKDENDNVP
VFPQPEIQLSIPENNDPGTQLIKISATDADSGSNALIIYSLGPDAPDGFNIDPRSGILSV
VKRLDREKQEKYSFTVIARDNGSTPLQSNVTVKLIVQDQNDNSPAFTHPEYNFYVPENLP
LYGTVGLITVTDADAGDNAVVTLSIINGKDNFIIDPKTGVIKPNITFDREQQSSYTFVVK
AVDAGQMQTTSYAKVTINVVDVNDNRPVFVIPSSNYSYDLVPSTTSPGSVVTRVFAIDND
TGMNAELQYSIIGGSPRGLFAIDKTTGNITLQEKIVTADQGLHRLVVKVKDLGQPESLHA
IALVHLFVNDTVSNATFIQEQLRKSLETPLERNIGDNEVTPQTNGYVIVVIAIIAGTMTV
ILVIFVTALVRCRQTPRHKVVQKSKQSGEWVSPNQEGRQIKKKKKKKKRSPKSLLLNFVT
IEEPKSDDPTHEHINGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPT
FQIKPETPVAPKKHHVIQELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGGFKAPGQ
IHTRQNQSQTPDKTFPVVPATCPHKQTQRRVTFHLPDGSQESCSDSGLGEQEPNSGASTT
QPLPLGFPQEEYYEQTSPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGHSD
SCWMPPALTQFQTSGAATLPSFGFQQSWARGNKPDGRHTLGRSVPKDDLDKGSNRPQFYN
TLERHCGKKEDPVKVIPLASFSATSSPQTSTGGGSSAFLHEHQL
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgaggaccttgcagatctttgaagagagtgcagcacctactctgagtatggacttggca
agtgaggcccatgttctggtggttttactcacctgcctgttcttgatgtgccgggctcaa
gagaaggactacacggtcaaagaagagcagccggagaatgtgcgcatcggaaacctgcgc
aaagacctaaacttgaacctagatccagacattaaactctcttctgcgctgcagtttaaa
cctgtctacaagacaggtgatgtgcctttggtcaaggtagaagcaagcacgggagagatt
ttcaccacagccaaccgcatcgaccgtgagaaactctgttccggagtcttcaacgagaag
cgctgcttttatgagatcgaggtcgccgtgctacccgacgagatttttcgactggtcaag
atccgcttcctcatcgaagacatcaacgacaacgccccactctttcaatcgacggtcatc
aacatctccattccagaaaacacagccattaacagccgctaccctgtcccttccgcattt
gaccccgatatagggatcaatgggattcaacactacgagctagtcaagagcgtgagcgaa
tttggcctggacatcatcgagacgcctgaaggagacaaatggccccaactcatagtccag
cagagcctcgatcgggagacgaaggacacctttgtgatgaaaattaaagtagaggatggt
ggcacccctccaaagtccagcacagccattctgcaggtcaccgtctcagatgtgaatgac
aatcggccggtgttcaaggacagcgaggtggaggtaaacgttcctgaaaatgccccaatg
ggaacatctgtcactcaccttcatgccacagatgctgatctgggatccaatgctcagatt
caattctccttcagcaaccaaatctcccctgccacgaaacgacattttgctattgacagt
acaactggactgattaccatcaagcagccgttggacagggaagtcaacccggtgcacaag
cttatagtgctggccagtgacggaagctctaccccttcaagggctacagtgatagtcaat
gtaacagacattaatgacaacgtcccctctatagatacccgctatataatgaatctcgtt
aatggcactgtgctgttgtctgaaaatgcccccctcaacacaaaaatagccctaattact
gtgacggacagagatgcggatctgaatgggaaagtgacttgttacactgatcatgatgta
cctttccgactgaagccggtcttcaacgaccagtttttgcttgaaacggccgcaccctta
gattacgagacaactcgagagtatgccattcggatagttgcgtctgactctggtaaacct
cctctgaacacttcggcaatggttctgattaaaataaaggatgagaacgacaatgtccca
gttttccctcagcctgaaatccagctgtccattccggaaaacaatgacccgggcacacag
ttgataaaaatcagcgcaacagatgcagatagtggttctaatgcccttattatttatagt
cttggcccagatgctcctgatgggtttaacatagatccccggtctggaatcctttctgtt
gtcaaaaggctggatagagagaagcaggagaagtactcattcacagtcattgccagggat
aatggttctacccctctccaaagcaacgtcaccgtgaagctaatagtccaagaccaaaat
gacaacagtccagcctttacccatcctgagtacaacttctatgtgcctgagaacctgcct
ttgtacgggacggtgggtttgatcactgtcacggatgcggatgctggtgacaatgcggtc
gtcactctctcaatcataaatgggaaggacaatttcatcatcgaccccaaaaccggggtg
atcaaaccaaacattaccttcgacagggagcagcaaagttcctacacgtttgttgtcaag
gctgtggacgcaggtcaaatgcaaaccacctcctatgccaaggtcaccataaatgttgtt
gatgtgaacgacaatcgaccggtgtttgtcattccctcctcgaactactcctatgatcta
gtaccttcaaccaccagccctggatcagtggtgaccagagtatttgccattgacaatgac
actgggatgaacgctgagcttcagtacagtattatcggaggctctccgagaggactgttt
gccattgacaaaacgacaggcaacataactctgcaggagaagattgtaacggcagaccaa
ggccttcataggctggtggtgaaggtcaaggacttgggacagccggagtccttgcatgca
atcgcccttgttcatttgtttgtcaacgacactgtctccaacgccacgtttattcaggaa
caacttcgcaaaagtttggagactcctttggagcggaacattggggacaacgaggtgaca
ccccagaccaacggctacgtaattgttgttattgccataatagctggaactatgactgtt
atcttggtgatctttgtgactgctttggtacgctgtcgacagacaccgagacacaaagtt
gtccagaagagtaagcagagcggcgagtgggtatcacccaaccaggagggtcggcagatt
aaaaagaaaaagaagaagaagaagaggtccccaaaaagtttgctgctgaatttcgtaacc
atcgaggaacccaagagcgacgaccctactcacgagcacatcaacggcaccttagacctc
cctgtagaactcgaggagcagacaatgggaaagtacaactgggctaccacaccgactact
ttcaaacccgacagtcctgacttagccaagcactacaaatccgcttcccctcagccgaca
ttccagatcaaaccagagacccctgtggctcccaagaagcatcatgtcattcaggaactc
ccactggacaacacattcgtggtgggctgtgactcactctccaaatgttcctccagcagc
tccgacccctacagcgtttcagagtgcagctgtcaagggggcttcaaggcacctggacaa
atccacaccagacagaaccagagccagactccagataaaacattccctgttgtcccagcc
acgtgcccccacaagcagacgcaacgccgcgtgacctttcacctcccggacggctctcag
gagagctgcagtgacagcgggcttggagagcaggaacccaatagcggtgccagcaccacc
cagcctctgcccttgggcttccctcaggaagagtactatgaacagacctcaccgaacagt
cgcaccgagggtgacggcaactctgaccccgagtccactattgaagtgaacctgcagaaa
gctctcgccgaggcctcggagacctgtacccaggaatgtctgatcctgggtcattctgac
agctgctggatgccgccagcgctgacccagttccagacgtccggcgccgccactctgccc
tcgtttggttttcaacaaagctgggcgcgggggaacaagccagatgggcgtcacaccctt
ggcaggtcagtgcccaaagatgatctggacaaagggagcaaccggccccaattctacaac
acacttgagagacactgcggcaagaaagaggatcccgtcaaggtcatccctctagccagc
ttttccgccacgtccagcccccagacgtccaccggcggaggctcatccgccttcctgcac
gagcatcagctgtag
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