Labeo rohita (rohu): 127176567
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Entry
127176567 CDS
T09007
Symbol
pcdh18b
Name
(RefSeq) protocadherin-18b isoform X1
KO
K16499
protocadherin delta 2
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lroh04515
]
127176567 (pcdh18b)
Cell adhesion molecules [BR:
lroh04515
]
Cadherins
Protocadherins
127176567 (pcdh18b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
127176567
NCBI-ProteinID:
XP_050984274
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Position
14:14665700..14671433
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AA seq
1163 aa
AA seq
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MGTTKYSSDRNVLFCKTLLKLLLLAAVAHNVSGKTLKYKVLEEQRVGTVIARLKEDVAGI
LSKLPSSVSPRFRAMQRGSTPLLSVREEDGEISIATKIDREKLCEKNLNCTIEFDVITLP
TEYLQLFHIQVEVLDINDNAPQFSRAIIPIEISESASVGTRFPLDSALDPDVGENALHTY
SLTRNNFFKIDIRTRTDGAKYADLVVMRELDRETQSSYQLQLTASDSGVPPKSGSTLLKI
SISDSNDNSPAFDEQAYVVNLLENSPLGTLLVDLNATDPDEGNNGKIVYSFSSHVPPKIL
ETFKINPDNGHITLIKKVDYETTSSYEIDVQAQDMGPNSIPGHCKIIIKVVDVNDNKPKI
NINLMTQGKEEVAYISEASPVDTFIALVRVDDSDSGLNGEVVCRLHGHGHFRLQKTYENN
YMILTNVSLDREKRSEYSLTVIAEDRGSPSLSTIKHFTVQVQDENDNPPRFEKSRYEIFK
SENNSPGAYLTSVVATDPDLGSNGQVTYSVVDSQVQGSPISTYVTVDPSNGAVYALRSFD
REDIGRLSFTVQARDGAGPASLSSNTTVLLTVLDENDNPPIIVAPQLINHTAEVPLWRHA
EPGHLVTIIKATDCDAGANSELTCSIVGGNDEGLFVIEPRRCELRTNGSVEASGREGFDL
AILVQDRGASIRLSARAVLHISLRDYPESYSLNPSDMNNQSTLDVSMIIIISLGAICGVL
LIVMVMFATRCSREQKDPRHSYNCRVAESTYQNHPKKPARQIHKGDITLVPTVNGTLPVR
AHPRSPSASPAPESRQSHHSRQSLNSLVTISSNHVPENFALELAHATPPVEQVSQLLSIL
HQGQYQPRPSFRGNKYTRSYRYALNEMDKFSLKDSGRGDSEAGDSDCEMGRESPLLGEGF
SELFTPDGHHRLHPTMKLCTEECRVLGHSDQCWMPPLPSPASSDYRSNLYIPGEDPQQKA
APEAPQSGESTLRKKSFSTFGKESEEGEGEGEAGDGEDLCGTTSLLSEMNSVFQRLLPSS
LDNYNETNETEKVTACATGVGSLERRKGHLPGKPSPATYQQNVAVWAANTHFQNPGHGHA
PASHMTALVAPLPAPLPAPVPASASSSKWLPAMEEIPENHEEDELESVLGHLHGKRCDSR
SEIMDASELVAEINKLLQDVRQS
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgggaacaactaaatactccagcgacaggaatgtactgttttgcaagacgcttctgaaa
cttctgcttctggcggccgtggcgcacaacgtttcggggaagactttaaaatacaaagtt
ttggaggagcagagagttggcacggtgatcgccagactgaaagaggatgtagccggtatc
ttatccaaactcccgagctcagtgtccccgcggttccgcgcgatgcagagaggcagcacc
cctctgctctccgtgcgtgaggaggacggagagatcagcatcgccaccaaaatcgaccgc
gagaagctctgcgagaaaaacttaaactgcactatcgagttcgacgtgatcacgctaccc
acggaatacctccagctgtttcacattcaagtggaagtgttggacatcaacgacaacgct
ccgcagttttcgcgcgccatcatccccatagagatatcagagagcgcgtctgtgggcact
cgcttccctttggatagcgcgctggacccggatgtcggggaaaacgcgctacatacctac
tcgctcactcggaataactttttcaaaatcgatatcaggacgcgtacggatggcgcaaag
tacgcggaccttgttgtgatgagggaactggacagggaaacacagtccagctaccaacta
caactcacagcgtcagactctggcgtgcccccgaaatctggctcaactctgctcaaaatc
agcatatctgattccaacgataatagtccggcatttgacgagcaggcttatgtggtcaac
ctcctggaaaattcaccactggggacgctactggtggacctgaacgccacagacccggat
gaaggcaataatggcaaaatagtgtactctttcagcagccacgtgcctcccaaaatccta
gagacctttaaaattaacccagataatggccacatcactctaattaagaaagttgattac
gaaactacttcttcatacgaaatagatgtgcaagctcaagacatgggtcccaactccatt
ccaggccactgtaaaataatcatcaaagtggttgatgtcaacgacaacaagccaaaaatc
aacatcaaccttatgactcagggcaaagaggaggtggcctacatctcagaggcctcccct
gtcgataccttcatcgcattagtgcgcgtcgatgacagcgactcaggtctaaacggtgag
gtagtgtgccgtctccatggccatgggcattttcgcctgcagaaaacctacgagaacaac
tacatgattctcactaacgtgtctctggaccgtgagaaacgctctgaatacagtctgacg
gtaattgcagaagaccgcggatcaccaagtctatccaccatcaaacacttcactgtgcag
gtgcaagatgaaaacgacaaccctccacgtttcgaaaagagccgatatgaaatcttcaag
tctgagaacaattcgccaggggcttatctgacgtcagtggtggccaccgacccagatttg
ggctctaatggtcaggtgacctactcagttgtggatagccaggtccaaggtagccctatt
tcaacttatgtgaccgttgacccatctaacggagctgtgtatgctctccgaagctttgat
cgtgaagatatcggccggctttcgttcaccgtgcaggcgcgggatggtgcaggcccagct
tctctaagcagcaacaccactgttttgctcactgtactagatgaaaatgacaacccacct
atcattgttgctccacaactgatcaaccacacagctgaggtgccactatggcggcacgcc
gagcctggtcatctggtgacaatcatcaaggcgacagattgtgatgcaggggccaacagc
gagctgacttgctccatcgtcggcggtaatgacgagggactctttgtcattgaaccacgc
agatgtgagttacgaaccaacggaagcgtggaggcctcgggccgtgagggatttgatctc
gcaatcctggtgcaagacagaggggcgtcgattcgtctctcagcgagggccgttctgcac
attagcctgcgggactatccagaaagctactccttgaacccttcagacatgaacaaccag
tcgactctggacgtgtctatgatcatcatcatctccctcggtgccatctgtggcgtgctc
ctcattgtcatggtgatgttcgcaaccaggtgctccagagagcaaaaagaccctaggcat
tcttataactgcagagtggctgagtctacctaccaaaaccatcctaaaaaacctgctcga
cagatccacaaaggcgatatcacattggtccccactgttaatggaaccctgcctgtgagg
gcccatcctcgatccccttcagcctcacctgctccagagagccgccagagccaccacagc
cgccaatcactcaacagcctggtcaccatctcctccaatcacgtgccggagaacttcgct
ctagaacttgctcatgccacaccaccagttgagcaagtctcacagcttctgtccatactt
catcagggccagtaccaacccagacccagtttccgtggcaacaaatacacccggagctac
aggtatgctttgaatgaaatggataagttcagtctgaaggacagtggacgaggtgatagc
gaggcaggagacagcgattgtgagatggggagggagtctcctctgcttggagaaggcttc
agtgagctcttcacacctgatggacatcaccgactgcatccaacaatgaagctgtgcact
gaagagtgtcgtgtcctcggtcactctgaccagtgctggatgcccccgttgccttcccca
gcctcctctgattaccgcagcaacctctacatccccggtgaagaccctcaacagaaagcc
gcccctgaagcaccacaatccggtgagtcgacactgagaaagaagagcttctccacattc
ggcaaggagagcgaggagggcgagggcgagggcgaggcaggtgatggggaagacctgtgc
ggaacgacttctctgctgtcggaaatgaacagcgtgttccaaaggctcctcccctcctcg
ctggataattacaacgagactaatgaaacagaaaaggtaacagcatgtgctaccggggtg
ggatcgttggaaagaaggaagggccacttacctggtaaaccaagccctgccacttatcag
cagaacgtggctgtttgggccgccaatacgcatttccaaaatcccggacatggccacgcc
cctgctagtcacatgacagccctggtggctccgctccccgcccctctgccagctcctgtg
ccagcatcagcttcctcttcaaaatggctgcccgcaatggaggagattcctgagaatcac
gaggaagacgagttagagtctgtgctcgggcatctgcacggcaagcgctgcgacagtcgc
agcgaaattatggacgccagcgagctggttgcagaaattaacaaactccttcaagatgtc
aggcaaagctaa
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