Labeo rohita (rohu): 127176858
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Entry
127176858 CDS
T09007
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127176858 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lroh03041
]
127176858 (dhx16)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127176858 (dhx16)
Spliceosome [BR:
lroh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127176858 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
wHTH-PRTase_assc
PWI
AAA_30
Flavi_DEAD
Cas3-like_C_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
127176858
NCBI-ProteinID:
XP_050984633
LinkDB
All DBs
Position
15:complement(30032488..30074369)
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AA seq
1051 aa
AA seq
DB search
MANLEQWVSDQLHDILGLSDRYVAQFMIGLVQKSSGPQDFVARLQQTGTIDIDQRITAFA
HELYNKAPKKHVAEKPARAVERQVMEMERKNQTYTLLEDSESDGETVRERGKEKKSKDRD
KGKKRKHLRQKRDESPSSEEDSKQSSKVIDEPKKAAKEEEEEWEKEERERLQDLEERDAF
AERMKQKDKDKTRHILERNDKKAYEEAQKRLKMAEEDQKKMLPELRKQSRREYLTKREQE
KIDDLEAEIKDEEYLFSTQNLTDRERKELEYKRQVRDLARDYKKAGAKEKEERNNRYYMP
EEIRSKSIPQKDMDLEFEETPREGGGEQGRWEEARVATATLQFGAREERERRKKEEQEKY
QLILEEEEMINFVSTAITMKGTLSEKESEPELSQAEQHKQSIQEVRRSLPIFPYREDLLA
AIRDHQILVIEGETGSGKTTQIPQYLLEDGYTNGGMKIGCTQPRRVAAMSVAARVAQEMS
VKLGNEVGYSIRFEDCTSERTILKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTD
ILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIYYTKAPEAD
YLEACVVSVLQIHVTQPAGDVLVFLTGQEEIEACCELLQERCRRLGSKISELIVLPIYAN
LPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLI
VTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLKSL
GINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILA
SEHYKCSEEILTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHMVLLNVYTQWVE
SGYSTQWCFENFIQFRSMKRARDVRDQLEGLMDRIEVELCSCSGDTVPIRKAVTAGYFYH
TARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWMIYHELVFTTKEFMRQVIEIESGWLLE
VAPHYYKNKELEDSSSKKMPRKQGKAREELG
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctggaacagtgggttagtgaccagctccatgacatcctgggtttgagtgac
cgatatgtggcccagttcatgatcggtctggtgcagaagtcttctggacctcaggacttt
gtggctcggcttcagcaaaccggaaccatcgatattgatcaaagaatcacagcgtttgca
catgagctgtacaacaaagctcccaaaaaacatgtggctgaaaaacctgcccgggcagtg
gaacgacaagtcatggaaatggagagaaaaaaccaaacttacactcttctggaggacagt
gagagtgatggagagacggtgagagaaagaggaaaagagaagaaaagtaaagaccgagac
aaaggaaagaaaagaaaacacctcagacagaaacgagacgaaagtccatccagtgaagag
gacagtaaacaaagctctaaagtcattgacgagccaaaaaaagctgctaaggaagaggag
gaggaatgggagaaagaagagagagagagacttcaagatctggaggagagggatgcattt
gctgaacgaatgaaacagaaggacaaagacaagacgagacacatacttgagagaaatgac
aaaaaggcttatgaggaagctcagaaaagactcaaaatggctgaagaggatcaaaagaaa
atgcttccagagttaaggaaacagtcacgtcgggagtatctgaccaaaagagagcaggag
aagattgatgaccttgaagctgaaattaaggatgaggaatacctattttcaactcagaac
ctcacagatcgggaaaggaaagaactagagtacaaacggcaggtcagagacctggcccga
gactacaagaaagcaggagcgaaagaaaaagaagagagaaacaacagatactacatgcca
gaggagataagaagcaagtccattcctcaaaaagacatggacctagagtttgaagagact
cccagagagggaggtggggagcagggccgctgggaggaggcgagagtggccaccgccacc
ctgcagtttggggccagagaagagcgggaacgccgcaaaaaggaggagcaggagaagtac
cagctcattttagaggaagaggagatgatcaacttcgtcagcacggccattactatgaaa
gggacgctgtcggaaaaggaaagtgaacctgagttatcacaggctgagcagcacaagcaa
tccatccaggaagtgaggcgcagccttcccatctttccttacagagaagatcttctcgct
gccatcagagaccaccagatcttggtcatagagggtgaaaccggatctggcaaaaccaca
cagatccctcagtatctactggaagatggttatactaatggaggaatgaagattggctgc
actcaacctcgaagagtggcggccatgtctgtagcagccagagtcgcacaggaaatgagt
gtcaaactaggaaatgaggtgggctacagcatccgttttgaggactgtacgtcagaacgc
accattcttaagtacatgactgatggcatgttactcagagagtttcttacggagcccgac
cttgccagctacagtgtgatcatcatcgatgaggcccacgaacgaacgttacacacagac
atcctcttcggtctaataaaagacattgcacgtttccgccctgatctgaaggttctggtg
gccagcgccactctggacacagagcgtttctcctgcttctttgatgacgcacccgtattt
aggattccaggtcgtaggtttcccgtagacatctactacacaaaggctccggaggccgac
tacctagaagcatgtgtcgtgtcagtgctacagatccatgtcacgcagccagctggagac
gtactggtgtttctcacaggacaggaggagattgaggcgtgctgtgaacttttacaggag
agatgtaggagactgggctcgaagatatcagagctcattgttctgcccatttatgccaac
ttgccatcggacatgcaggccaagatctttaatcccactccgcctggtgcacgcaaagtt
gtggtggccacaaatattgcagaaacgtctctcacgatcgacggcatcatctacgtgatt
gatccaggtttctgcaaacaaaaaagttacaatgcaagaacaggaatggaatctctcatc
gtcactccctgttcacgagcctctgccaatcagagagcaggtcgtgcaggaagagtggct
gctgggaaatgttttaggctgtacaccgcctgggcctttaaacatgagatggaggaaacc
acagtccctgagatccagagaacaaacctgggcaatgtggttctgctgctcaaaagtctc
ggcataaatgatttaattcatttcgacttcatggatcctcctcctcacgaaacgctggtg
ttggcactggagcagctttatgccttgggcgcccttaaccacctcggtgaactcactaag
ctcggccgaaggatggctgaacttcctgtagaccccatgctaagtaaaatgattctggct
tctgaacattataagtgctcagaggagattctgaccatcgcggccatgctgtccgtgaac
aactccatcttctaccggcccaaggacaaagtggttcatgccgacaacgctcggatgaac
tttgtggtaccaggaggagatcacatggtgctgctcaatgtatatacacagtgggtagag
agcggttactccactcagtggtgcttcgagaacttcatccagtttcgctccatgaagaga
gcccgagatgtccgtgatcagctggaggggttgatggacaggatcgaggtggaactgtgc
agctgcagtggtgacactgtgcccattcgcaaggcggtgactgcaggatatttttaccac
acggcacgcttgagtaaagggggttataaaacagttaaacaccagcaaactgtttacgtc
catcccaacagctcactctttgaggaacagccacgttggatgatctaccacgaactggtc
ttcaccaccaaagagttcatgagacaggtgatagagattgaaagtggctggcttttggaa
gtggctcctcattattacaagaataaagaactggaggacagcagcagtaagaagatgccc
cgcaaacaaggcaaagcccgtgaagagctgggctga
DBGET
integrated database retrieval system
