Labeo rohita (rohu): 127176886
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Entry
127176886 CDS
T09007
Symbol
cldnf
Name
(RefSeq) claudin f
KO
K06087
claudin
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03272
Virion - Hepatitis viruses
lroh04382
Cornified envelope formation
lroh04514
Cell adhesion molecule (CAM) interaction
lroh04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
127176886 (cldnf)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
127176886 (cldnf)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
127176886 (cldnf)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
127176886 (cldnf)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lroh03037
]
127176886 (cldnf)
04147 Exosome [BR:
lroh04147
]
127176886 (cldnf)
Cilium and associated proteins [BR:
lroh03037
]
Other cilia and associated proteins
Stereociliary proteins
127176886 (cldnf)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of ovarian cancer cells
127176886 (cldnf)
Exosomal proteins of colorectal cancer cells
127176886 (cldnf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PMP22_Claudin
Claudin_2
DUF1129
MFS_MOT1
Motif
Other DBs
NCBI-GeneID:
127176886
NCBI-ProteinID:
XP_050984683
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All DBs
Position
15:1009900..1018078
Genome browser
AA seq
409 aa
AA seq
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MVSLCRQILGLSLAISGFIGAILCFALPMWKVTVFIGANIVTTQIIWEGLWMNCVVQSTG
QMQCKIYDSLLALPQDLQAARTLMVIAIIICCFAIVLGIASGKCTNFVKREDNKAKVAIA
SGVLFIVSGVLVLVPVCWSANTIVRDFYNPLLTDAQRRDSFNMGRIAKEVSGQVLCFIGF
VGICVCCGIPMWRVTSYIGANIVTGQVVWDGLWMNCVMQSTGQMQCKIQDSIMRLTQDLQ
AARALTIIAIVIGFVGMLLTFVGGQCSSCLKNESSMAKVLICGGILCMIAGVVCLIPVCW
SSAYTISDFQSILTIETQKRELGASIFIGWGASGCLLLGGIILCTSCPKREDMYPNYPGM
YPYQGPVYGPPGSYMPAKTYAPSPVYSGAYIPNKSYPAPTYSPVPGQYI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggtgtctctgtgtcgacagatcctaggcctgtccctggccattagtggtttcattgga
gccattctgtgttttgcccttcccatgtggaaggtgactgtgttcattggagccaatatc
gtgacgacgcagatcatctgggagggcttgtggatgaactgtgtggtccagagcacagga
cagatgcagtgcaaaatctacgactcgctcctggctttacctcaggacctgcaggctgct
cgcacccttatggtcatcgccatcattatctgctgctttgcgatcgtcctggggattgcc
agtggaaaatgcaccaactttgtcaagagagaagacaacaaggcaaaggtggctatcgcc
agtggtgtgctcttcatcgtctctggagtgttggtcctggttcctgtctgctggtcagct
aacaccatcgtcagggatttctacaatccccttctcacagatgcccaaaggagggacagc
tttaacatggggaggattgctaaagaggtttccggccaagtgctgtgcttcattggattc
gttggcatatgtgtttgctgtggcattcccatgtggcgtgtcacttcatacattggtgcc
aacatcgtcaccggccaggtcgtctgggatggcttgtggatgaactgtgtgatgcagagc
acaggacagatgcagtgtaaaatccaagactcgatcatgcgactgacccaggacttgcaa
gcggcacgtgcgctgaccatcatcgcaatagtgatcggcttcgttggaatgctattgact
tttgtgggaggccagtgcagcagttgtctgaagaacgaatcgtccatggccaaagtgttg
atctgtggtggcatcctgtgcatgatagctggagtcgtctgtctcattccggtctgctgg
tcctcagcctacaccatctcagatttccagagcattctcacaatcgagacccaaaagagg
gagcttggggcatccattttcattggctggggtgcctcagggtgtcttctgctgggaggg
atcattctgtgtacttcttgtccaaagagagaagatatgtatccaaattacccaggcatg
tacccttaccaaggacctgtgtatgggcctcctggatcttatatgcctgccaaaacatac
gcaccgagtcctgtgtattccggggcttatattcctaacaaatcgtatccagccccaact
tactcacctgttccgggacaatatatttaa
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