Labeo rohita (rohu): 127176939
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Entry
127176939 CDS
T09007
Name
(RefSeq) uncharacterized protein LOC127176939
Organism
lroh
Labeo rohita (rohu)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
FISNA
LRR_6
NOD2_WH
LRR_4
RVT_1
DUF5798
Motif
Other DBs
NCBI-GeneID:
127176939
NCBI-ProteinID:
XP_050984744
LinkDB
All DBs
Position
15:complement(30891627..30924541)
Genome browser
AA seq
2468 aa
AA seq
DB search
MDHSETDTTFPIADKLEYPVSAQRTNMQFTLNMEGKDSPSVTNVHQTTSDSVESSRVSSC
DDHSIDLPLRFKEMPPRSLRLIRSMTSESECSVTFIKSDLSVTPQPEAHDVSTSEFRQHC
GEIKAFKSKLKTKFQCLREVSTHEHPKPLNEIYTELYIIEGGEGKINDEHEVRWIEKAFR
KAATGDAPINLNDIFTPLPGQDQPIRTVLTKGVAGIGKTVSVQKFILDWTEEKANQDVHL
IFPLPFRELNLLKDQIFSLQGLLQFFMSTKQLEFSLNGGKIIFIFDGLDECHLSLDFQNN
VSLCDVNESASVNVLLTNLIVGNLLPSALIWITSRPAAADRIPFEHVHRLTEVRGFNDPQ
KEEYFEKRIRDEILAGRIISHLKSSRSLYIMCHIPVFCWISATVLEKMLSQTESEEIPKT
LTQMYTHFLILQTTIKHEKDYKMEVNDEDIILKLGKLAFQQLKARNLIFYEEDLRECGII
VTEASVYSGMLTQIFRELGVDQRKVYCFVHQSIQEYLAALYVHMSFIMKNINMLCSTTES
FLSLFTKNTSMFKMHLCGVKKALKSENGHWDLFLRFLLGLSLESNQILLQSFLTDIRISS
YDNKEIVAYIKNKIVEYPSPEKSFNLFHCLNELNDDSLVAEIQQYLKSETMRGKSLQRSQ
WSALTFLILISEQKLDVFDLGKYAEERRVTDDILLRLLPVIEASRVAELDRSKLTYKCCG
ALASTLSSKSSCLRELYLGQNNLQDAGVKMLCVGLRSADCKLETLGLNDCRLTEKCCEDL
SSIFSTESSSLKVLDLNGNNLQDSGVKLLSSGLASPHCKVVDLSLWNCGFTNEGCAALAS
ALTANPSHLIDLSLSGNEIGDSGAKLLSRVLENPACKLESLWLKICGITYEGCAVLVEAL
KSNPSHLKVLSLYGNEIGASGKKLLTDVKDDETYKLDTIEPSHYHTDEALSQEGHPLQHV
HRLTPLHNPKLHFPIEGKSTPDHDGAASTVQHRKHLQWDLHVMPSTISREAVFDTIRHPP
SDASLLICHCQCENIKQRLAIVRVLQVSDGRVRASHHLTPWVIPIDMYTFNVSKNTTQKL
KKLEAEIVELQALIEATGGQNGIDALKSKKLIFADLLGTKAKGALVRSRYQNLAQMDAPS
KFFFNLERKNGQSRYIHSLRSESGHELTALPEIRRRAVRFYNELYGSEYKEDKELSSSFY
AGLPRLSEKSKAVLERPLCERELWNALQNMEGGKAPGIYGLPVEFYRAFWEVLCEDLLDV
LNESIAEGSLPLSCRRAVITLLPKKGDLQEIKNWRPIEGGDGAGLISIDQEKAFDRVEHQ
YLWATLDAFGFGPGFIGAIKVLYGDIEINSMDPLQQSESPALKQNKSNLEVPSCVSMKSD
ASKELYVELKGGSTSEDRQKTPEVPSCVSMKSDASKKLDVELKGGSTSEDRQKTSEMPSC
VSMKTDASKELDVELKGDSTSEDRQKISDLRSDTANHLPLSTKCDRNSKHRLIKQKRTDQ
SSGMPVNELYYYQESTYTQCRIQLQMKLITKFQFLHEGTEQQKSPTLLNEIYTELYITDA
KEINEECEIRQIETAAMKAVTEGTPINCNDIFTPLPEQDQLIRTVLTKGFAGIGKTVSVQ
KFILDWAEEKANQDIHFIFPLPFRELNLINNKKLSLLDLLHVFFPETKKMDIFSGTYKVL
IIFDGLDECHFPLSFQSNEILQDATKETSVDVLLTNLIAGNLLPSALIWITSRPAAADLI
PSECVHRLTEVRGFGEPEKVQYFRKRFRDQILAEKIISHLKSSRSLYIMCHIPVFCWISA
TVLEKILSQVESGEIPKTLTQMYTHFLIIQTKIKHDKDYERKVNTEDMILKLGKLSFQQL
VNHNAIFYEEDLKECGIDVTEASVYSGLCTQIFREEFGLHSGKIYCFVHLSIQEHLAALY
VHHTFTTQNINVFDQITEPSQEATNTQIPIFDLHQKAVDETLQNRNRHLGLFLRFLLGFS
LESNQTLLNVLLSQTESRHHNLEKTVEYIKKKIEEHPTPEKFINLFHCLSDLGDSSLAEQ
IQRYLNQRALTTAKLTPLQWSAVVFVLLTSENLDVFELKAYAWKTSCAQMVRVLLHLVPV
IKAYKSVRLGQCELTPKCCSPLATALASESSCVTEMNLNGNELTDEGVKLLSKGLGSSNC
KLEKMGLNDCYVMVEGCAALASALRSNPSHLRYLDLSFNKLGDKGVQCLSDELQNPLCKV
EKLKLRKCDVTDEGCAALTSALGSKPSHLRELDLTTNNIRDLGARWLSTALQDPECHLKI
LRLKECGLTDESCAALASALRSNPSHLKLLDLSENKLGDSGIKLLSKGPKCPAIGLEQLW
LTGCGITHKGCGALASALTSNLSQLKELNLSNNVIGNSGLKLLSAALESPHCKLQTLGLN
DCGVSDEGCSSLISALTLNLSNLSKLHLNGNEIEESTMEQLLVLKDNPDNKLKKVNCRSN
SLSWNTDF
NT seq
7407 nt
NT seq
+upstream
nt +downstream
nt
atggaccattcagagacagacacaacttttcccatcgcagacaaattggaatacccagtg
tcagcacagaggacaaatatgcagttcactctaaacatggaaggaaaagactcacccagt
gtcacaaatgttcatcagaccacatcagactcagtggaatcttctagagtatcgtcttgt
gatgatcactcaatagatcttccactgcgctttaaagaaatgcctcctcgttctctcaga
ttaatccggagcatgacatcagaatctgagtgcagtgtgactttcatcaagagtgacttg
tcagtgacacctcagccagaagcccatgatgtatccacttcggaattcaggcaacactgt
ggagagataaaagcctttaaatcgaaacttaagacaaaatttcagtgtctgcgtgaagta
tcaacacatgaacatccaaaacctcttaatgaaatctacactgagctctacatcatagaa
ggtggagaaggaaagatcaatgatgagcatgaggtccgatggattgaaaaagccttcagg
aaagctgcaacaggtgatgctccaatcaaccttaatgacattttcacaccgttacctgga
caagaccagcccatcagaactgtgctgaccaaaggagtagctggcattggaaaaacagtc
tctgtgcagaagttcatccttgactggactgaagaaaaagcaaatcaggatgtccacctc
atatttccacttcctttcagagagctcaatttgctgaaggaccaaatattcagtcttcaa
ggtcttctacaatttttcatgagcacaaaacaacttgaattctctttaaatggaggtaaa
atcattttcatcttcgatggtttggacgaatgtcacctgtctctggattttcaaaacaac
gtgagcttgtgtgatgtgaatgaatcagcttcagtaaatgtgctgctgacaaacctcatt
gttgggaatctgcttccctctgctctcatctggatcacctccagaccagcagcagctgat
cgcatcccctttgagcatgtccatcgactgacagaggtacgaggcttcaatgaccctcag
aaggaggaatacttcgagaagagaatcagagatgagatcctggctgggagaatcatctca
cacctgaagtcatcaaggagcctctatatcatgtgtcacatcccagtgttctgctggatc
tcagccactgttctagagaagatgttgagtcaaacagagagtgaagaaattcccaagact
ctcactcaaatgtacacacacttcctgatccttcagaccaccattaaacatgagaaagac
tataaaatggaagtgaatgacgaagacattatcttgaaactgggtaaactggctttccag
cagctcaaggcaaggaatctgattttctatgaagaagacctgagagagtgtggcattatt
gtgacggaagcatcagtgtattctggaatgctcacccagattttcagagaattaggagtg
gaccaaaggaaggtctactgctttgttcatcagagcattcaggaatatcttgcagctcta
tatgtgcacatgtcctttattatgaaaaacattaatatgctttgcagcaccacagaatct
tttttaagcttatttaccaaaaatacgtcaatgttcaaaatgcatctgtgtggcgtgaaa
aaagctctgaagagtgaaaatggacattgggaccttttcctccgttttctcctgggtctg
tctctagagtccaatcagatattattgcaaagctttctgactgacataagaatcagctcc
tatgacaacaaggaaattgttgcttacattaaaaataagattgtggaatatccatctcca
gagaaatccttcaacttgttccactgcctgaacgaactgaatgacgattctctggtagcg
gaaatccagcaatatctgaaatcagaaactatgagaggaaaaagccttcagcggtctcag
tggtctgctctgacttttttgatcctgatttctgaacagaagctggatgtgtttgactta
ggaaaatatgctgaggagcgcagagtcacagatgatattctgttgaggctgctgcctgtg
attgaggcatccagagtggctgagcttgatagaagtaaactgacatacaaatgctgtggt
gccttggcttccactctcagctccaagtcttcatgcctgagagaactgtacctagggcag
aataacctgcaagacgctggagttaagatgttgtgtgttggactaaggagtgctgactgt
aaacttgagacgcttgggcttaatgactgcaggctgacagagaaatgctgtgaagatcta
tcttcgatttttagcactgaatcttcaagtttgaaagtgctggatcttaatggaaacaac
ctgcaggattcaggtgttaaactactttcttctggactggcgagtcctcattgtaaagtg
gtggacttaagtttgtggaattgtggttttacaaatgaaggttgtgcagctctggcttca
gctctgacagcaaacccctcacacctgattgatctgagtctgtcaggaaatgaaatagga
gactcaggtgcaaagctgctttcaagagtgctggaaaatcctgcatgtaaactggaaagc
ctttggctgaagatttgtggtatcacttatgaaggctgtgcagttctggttgaggcttta
aaatcaaacccctcacacctgaaagtgctttctctctatgggaatgagattggggcctca
ggaaagaagctgctaactgatgtaaaggatgatgagacatacaaactggataccatagaa
cccagtcattaccacacagacgaggccctcagtcaagagggacacccactgcaacatgtc
caccgtttgacgcctttgcacaacccgaagctccattttcccattgaaggaaaaagcacc
ccagatcatgatggagccgcctccactgtgcagcatagaaaacatctccagtgggatctc
catgtcatgccatcaacaatctcacgagaagctgtctttgacaccatccgtcacccaccg
agcgatgcctcactattgatctgtcactgtcagtgcgagaatataaagcagcgtctcgct
atagtaagagtgcttcaggtgagcgatgggcgagtgagagcgtcacaccacctgacgccg
tgggtcattcccatagatatgtatactttcaatgtctctaaaaacactacacaaaaattg
aaaaaacttgaagctgaaattgtagagctacaggcactaatagaggctactggaggacag
aatggaattgatgccctaaagtccaaaaagttaatttttgcggacctgctaggcacgaag
gcaaagggagctttggtcaggtcgcgctatcaaaatcttgcgcaaatggatgccccatcc
aagttctttttcaatttggaaaggaaaaatggccagagtcgatatattcactcactgcgc
tcagaaagtgggcatgaattgacagcgctgcctgaaataagacggcgggctgtaaggttc
tataatgaactttatgggagtgaatataaggaagataaggagttgtcttctagtttttat
gcaggtttaccaaggctatcggaaaagtcaaaagcagtgctggagaggcctttgtgtgag
cgagagctttggaatgcactgcagaacatggagggtggaaaagctcctggtatttatggg
ttaccagttgagttttacagagccttctgggaggtgctgtgtgaggatctcttggatgtt
ctcaatgagagcatagctgagggttctctacctctgagctgcaggagagctgttattact
cttctgccaaagaaaggtgatttacaagaaattaaaaattggagaccgattgagggaggt
gatggggcagggctcatttccattgatcaagagaaagcttttgacagagtggagcaccag
tatctttgggcaactctggatgcttttggttttggaccaggttttattggagcaattaag
gtattgtatggagacattgaaataaactctatggatcctttacagcaaagtgaatctcct
gcactcaagcagaacaaatccaacttagaagttccgagctgtgtgtccatgaagagtgat
gcatcaaaggaactgtatgttgaattgaaaggtggcagcacttctgaagacaggcagaaa
acaccagaagtgcccagctgtgtgtccatgaagagtgatgcatcaaagaaactagatgtt
gaattgaaaggtggcagcacttctgaagacaggcagaaaacatcagaaatgcccagctgt
gtgtccatgaagactgatgcatcaaaggaactggatgttgaattaaaaggtgacagcact
tctgaagacaggcagaaaatatcagacttgagaagtgacacagcaaaccatctgccattg
tctacaaagtgtgaccgcaattctaagcacaggttaataaaacagaagagaacagaccaa
agcagtggtatgcctgtaaatgagttgtattattaccaggaatctacatatacacagtgc
agaattcaactccaaatgaaactgataacaaaatttcagtttttacatgaaggaacagaa
cagcaaaaaagcccaacactcctaaatgagatctacacagagctttacattacagatgct
aaagaaatcaatgaggaatgtgagatcagacagattgaaacagcagctatgaaagcagtg
acagagggcacaccaatcaactgcaatgacattttcacaccattacctgaacaagaccaa
cttatcagaactgtgcttactaaaggattcgctggcattggaaaaacagtctctgtgcag
aaattcattctggactgggctgaagagaaagcaaatcaggacatccacttcatatttccg
cttcctttcagagaactcaatttgataaacaacaaaaagctcagtcttttagatcttctc
catgtttttttccctgaaactaagaaaatggacatttttagtggtacatataaggtgttg
attatctttgatggtctggatgagtgccattttcccttaagttttcaaagcaacgagatt
ctacaggatgcaaccaaagagacatcagtggacgtgctcctgacgaacctgattgcaggg
aatctacttccctctgctctcatctggatcacttccagaccagcagcagctgatctcatc
ccctctgagtgtgtccatcgactgacagaggtacgaggctttggtgagccagagaaggta
caatacttcagaaaaagattcagagatcaaatcctggctgagaaaatcatctcacacctg
aagtcatcaagaagcctctatatcatgtgccatatcccagtgttctgctggatctcagcc
actgttctagagaagatattgagtcaagtagagagtggagagattcccaagactctcact
caaatgtacacacacttcctgatcattcagaccaagatcaaacatgataaggactatgag
aggaaagtgaacactgaagacatgatcctcaaactgggaaaactgtcttttcagcagctt
gtgaatcacaatgcaatcttctatgaagaagatctgaaagagtgtggcattgatgtgaca
gaagcatcagtatactctgggttgtgcactcagatattcagagaggagtttgggctgcat
tcgggaaaaatctactgctttgttcacctcagcattcaggaacatctggctgctctgtat
gtgcatcacaccttcacaacacagaacattaatgtgtttgaccaaattactgaaccatct
caagaagcaacaaatacacagattccaatatttgatctgcatcagaaagctgtcgatgag
accttacaaaatagaaatagacacctgggcctttttcttcgcttccttctgggcttctca
cttgagtccaatcagactcttttaaacgttcttctatcacagacagaaagcaggcaccac
aatttagagaaaacagttgaatacatcaagaagaagatagaggaacatcccactcctgag
aagttcatcaacctgttccactgcctcagtgatctgggtgacagttcactagcggaacaa
attcagcgttatctcaaccagagagctcttaccacagccaaattaacccctttacagtgg
tcagctgttgtgtttgttcttctcacttctgagaacttggatgtgtttgaattgaaggca
tatgcctggaaaactagctgtgcacaaatggtgcgagttcttttgcatcttgtaccggtg
attaaagcatacaaatcagttcgacttggtcagtgtgaactgacaccaaagtgctgcagt
cctctggctacagctctcgcctctgagtcttcatgtgtaacagaaatgaatctgaatgga
aatgaattaacggacgaaggagtgaagttgctctctaaaggactaggaagttctaattgc
aaactagagaaaatggggctgaatgattgttatgtcatggttgaaggttgtgctgctctg
gcttcagctctgagatcaaacccctcacacctgagatatctcgatttgtcatttaataaa
ttaggagataaaggagtacagtgtctgtctgatgaactacagaatcctctttgtaaagta
gagaaactgaagctgaggaaatgtgatgtaacagatgaaggttgtgctgctctgacttca
gctctgggatcgaaaccctcacacctgagagagctggatctgactacaaataatataaga
gatttgggagcgaggtggctatctactgctttacaggatcctgaatgtcatttgaaaatt
ctgaggctaaaggagtgtggtctcacagatgaaagttgtgctgctctggcttcagctctg
aggtcaaacccctcacacctgaaattgctagatctgtctgagaataaactgggagactct
ggaattaagcttctttctaaaggaccaaagtgtcctgctattggtcttgaacaactgtgg
ctgactggttgtggtatcactcataaaggttgtggtgctctggcttcagctctgacatca
aatctctcacagctaaaagagctgaatttgtctaacaatgtcattggaaactcagggctg
aagctgttgtctgctgcactggagagtcctcactgtaaactacagacacttgggttgaat
gactgtggtgtcagtgatgaaggttgcagttctctgatttctgctctgacattaaacctc
tcaaacttgagtaagctgcatctaaatgggaatgaaatagaagagtcaacaatggagcag
ctcttagttcttaaggataatccagataacaagctgaaaaaagtcaattgcagatctaac
tctttatcatggaatacagatttctag
DBGET
integrated database retrieval system
