Labeo rohita (rohu): 127177147
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Entry
127177147 CDS
T09007
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127177147 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lroh03041
]
127177147 (prpf8)
Spliceosome [BR:
lroh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
127177147 (prpf8)
Complex C
U5 SnRNP specific factors
127177147 (prpf8)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
127177147
NCBI-ProteinID:
XP_050985172
LinkDB
All DBs
Position
15:complement(25164459..25181760)
Genome browser
AA seq
2342 aa
AA seq
DB search
MAAAFPYRGVPGTMPPGVPPPPPAVAPVPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGF
VDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQI
RDVPVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEE
PPLDYADNILDVEPLEAIQMELDPEEDSSVAEWLYEHQPLKDTTKFVNGTTYRRWQFTLP
MMSTLYRLANQLLTDLVDENYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDW
NEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFD
PLINPISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNL
RSGRTRRAIDVPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLF
RSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTK
ERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYR
YKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLG
NLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHL
SESWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCK
KNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYK
HDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKE
VGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVY
KWCQGINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKN
NVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLS
FQDTATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKC
WPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFE
CRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGS
TTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPP
VVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQ
PWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYD
KGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGT
YFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQV
QLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKET
IHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDS
HDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGAKPLIQQAMAKI
MKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKT
FEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLP
VEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQ
MVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTD
EEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQT
KEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVS
SDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGT
HQTVHLPNQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTII
ITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMV
PGQVSWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDM
YA
NT seq
7029 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcattcccctacagaggtgtgcctggaacaatgcctccaggtgttcctcca
cctcctcctgcggttgctccagtaccagattacatgactgaagagaaactgcaagagaaa
gctcggaaatggcagcagcttcaggccaaacgctactcggagaagaggaaatttggcttc
gtggatgctcagaaagaggacatgccacctgagcatgtgcgcaaaatcatcagggaccac
ggtgacatgacgaacaggaaatttcgtcatgacaagagggtctaccttggggccttgaaa
tatatgccccatgcagtgctcaaactgctggagaacatgcccatgccctgggagcagatc
agagatgttcctgtgctctaccacattacgggcgccatttcgttcgtaaacgaaatccca
tgggtgattgagccggtatacattgctcagtggggcacaatgtggatcatgatgcgtcgt
gagaagcgagacagacggcacttcaagcgcatgcgtttccctccgtttgatgatgaagag
cctccgttggattatgcggacaacatcctggatgttgagcctctggaggcgatccagatg
gagctggaccctgaggaagactcctctgttgcggaatggttatatgagcatcaacctctg
aaagataccacaaaatttgtcaatgggaccacatacagacgctggcagttcactttaccg
atgatgtccacgctgtatcgattggcgaatcagttgctgacagacttggtggatgaaaac
tacttctacttgtttgacttgaaggctttcttcacctcaaaagcattgaacatggccatt
ccagggggacccaaattcgagccgcttgtccgagacattaaccttcaggatgaagactgg
aatgagttcaacgacatcaacaagatcatcatcagacagccaatcaggacagaatacaaa
attgcattcccttacctatacaacaacctgccacatcatgtgcacctcacctggtaccac
acaccaaatgtggtgttcatcaagactgaggatcctgatctgcccgccttctactttgac
cctctgatcaaccccatctcccataggcactccgtcaagagccaagagcctctgccagat
gatgatgaggagtttgaactgcctgagtatgtagagccattcctgaaggagacgcctctc
tacactgacaacacagccaatggaattgcgctgttgtgggcgcctcgtccatttaatctc
cgctcaggaagaaccagacgggctattgatgtgcctctcatcaaaaactggtatcgtgag
cactgtcctgcaggccagcctgtgaaggtgcgtgtgtcttaccagaagctcctgaagtac
tacgtgctcaatgctctaaaacacagaccacctaaggcacagaaaaagagatacctgttc
cgctctttcaaagccaccaaattcttccagtccacaaagctggattgggtagaagtcggt
ctccaggtctgccggcagggctacaacatgctgaacctgctgattcacagaaagaacctc
aactatctgcacttggactacaacttcaacttgaagcccgtgaaaaccctcacaacaaag
gaacgtaagaagtccagattcgggaatgcgttccacttgtgtcgtgaggttctgcgtttg
agcaaacttgtggtggacagccatgtgcagtacaggcttggaaatgttgacgctttccag
ctggcagatggactccagtacatcttcgctcacgttggtcaattgaccggaatgtaccgc
tacaagtacaagctcatgaggcagatcagaatgtgcaaagacctgaagcatctcatctac
taccgcttcaacacaggcccagttggaaaaggtccaggatgtgggttctgggctccagga
tggagagtctggctgttcttcatgagaggcatcactcctcttctggagcggtggcttgga
aatcttctggccaggcagtttgagggtcgacactccaagggtgttgcaaagactgtgacc
aaacagcgtgtggagtctcactttgatctggagctgagagctgctgtgatgcatgacatc
ctggatatgatgcctgagggtatcaagcagaacaaggccagaaccatcttgcagcatctc
agcgagtcatggagatgctggaaggccaacatcccttggaaggttcctgggcttccaacc
cctattgaaaacatgattcttcgctacgtgaaggccaaagctgactggtggacaaacaca
gcccactacaaccgtgagagaatcagaagaggagccactgtggataagactgtgtgcaag
aagaacctgggaagactcactcgactctatctaaaggcagagcaggagagacagcacaat
tacctgaaggatggaccttacatcacagctgaggaggctgtggccatctacaccaccaca
gtgcactggctggagagtcgtcggttctctccaatccccttccctcctctgtcttacaaa
catgacactaagctgctcatcctggctttggagaggctcaaggaggcttacagtgtgaag
tcaagactaaaccagtcgcagcgtgaggagttgggtctgattgagcaggcctatgacaat
cctcatgaggctctgtccagaatcaaacgtcacctcctcactcagagagcgttcaaagag
gtcgggattgagttcatggacctttacagtcacttggtgccagtttatgatgttgaacct
ctggaaaagatcactgatgcatacctggatcagtacctgtggtatgaggcagacaagcgc
agactttttccaccctggatcaaaccagctgacacagagccacctccactgctggtgtac
aaatggtgccaaggaatcaacaatctgcaggatgtgtgggagacagcagaaggcgaatgc
aatgtcatgctggagtctcgctatgagaagatgtatgagaagattgacttgacgctgctg
aacaggcttctgcgtctcattgttgatcacaacattgccgattacatgacggccaaaaac
aacgttgtcattaactataaggacatgaaccacacaaactcgtatggtatcatccgcggt
ctgcagtttgcctctttcatcgtgcagtactatgggctggtgatggacctgctggttctg
ggtctgcacagagccagtgagatggctggacctcctcagatgcccaatgacttcctcagc
ttccaggacacggctactgagagcgcccacccaatacgtctctactgcagatacatagac
cgcattcacatcttcttcagattctctgctgatgaggcgcgagatctcatccagaggtac
ttgaccgagcacccagaccccaacaatgaaaacattgtgggctacaacaataagaaatgc
tggccaagagatgctaggatgagactgatgaaacatgatgtgaacttgggccgtgctgtg
ttctgggacatcaagaatcgtctgcctcgttctgtgaccacagttcagtgggaaaacagc
tttgtgtctgtgtacagcaaggacaaccccaatctgctcttcaacatgtgtggctttgag
tgtcgcatcctccccaagtgccgcactagttatgaggagtttacgcataaagatggtgtg
tggaatttgcagaatgaggtgacgaaggaaaggacagcacagtgtttcctgcgtgtagac
gatgagtccatgcagaggttccacaacagagtcagacagattctaatggcttctggatcc
acaaccttcaccaagattgtgaacaagtggaacactgctctgattggtctgatgacatac
ttccgtgaagctgtggtcaacacacaagagcttttggacctgctggtgaagtgtgagaat
aagatccaaacccgtatcaagatcgggctgaactccaaaatgcctagtcgtttccctcct
gtggtgttttacactcctaaggagttgggtggactaggaatgctttccatgggacacgta
ctgatcccacagtctgaccttcggtggtccaaacagactgatgtgggcatcactcatttc
cgctctggtatgagtcatgaggaggatcagttgattcctaatctgtaccgctacatccaa
ccatgggagagcgagttcattgactcccagagagtttgggccgaatacgctctaaagcgt
caggaggccattgctcagaacagacgtctgacactggaggatctggaggactcctgggac
agaggtattccacgtatcaatacgctcttccagaaagacagacacactcttgcttatgac
aagggctggagagtcagaacagacttcaagcagtaccaggtgttgaagcaaaatccattc
tggtggactcaccagaggcatgatggaaaattgtggaatttgaacaactaccgtactgac
atgatccaggcacttggaggtgtggaaggcattcttgagcacacgctcttcaagggaacc
tatttccctacctgggagggtctcttctgggagaaggccagtggtttcgaagagtccatg
aaatggaagaaactcaccaatgctcagagatctggtctgaaccagattcctaatcgacga
ttcaccttgtggtggtcacctacaatcaacagagccaatgtatatgtgggtttccaagtg
cagttggacctcactggaatcttcatgcatggtaaaatcccaactctcaagatctctctg
atccagatcttcagagctcacttgtggcagaagattcatgagagcatcgtcatggatctc
tgtcaggtgtttgaccaagagctggatgctttggagatcgaaactgtccagaaagagacc
atccatcccaggaagtcttacaagatgaattcctcctgtgctgacattctattgtttgcc
tcctacaaatggaacgtctctcgcccctcgcttctagcagactccaaggatgttatggac
agcaccaccacgcagaagtactggattgacattcagctcagatggggtgactacgactcc
catgacattgagcgatacgccagggccaaattcttggactacaccactgacaacatgagt
atttacccatcacccactggagtcctgattgccattgatctggcatacaaccttcacagt
gcttatggtaactggttccctggagcaaagcccctgatccagcaggccatggcgaagatc
atgaaggccaacccggctctgtatgtgctgagagagcgaatccgcaagggtctgcaactc
tactcttcagagcccactgagccttacctgtcttcccagaactacggagagctcttctcc
aaccagatcatctggtttgtggatgacaccaatgtgtacagagtcaccatccacaagacc
tttgaaggtaacttgaccacaaaaccaatcaacggagccattttcattttcaaccccaga
actggacagcttttccttaagatcattcacacatctgtatgggcaggacaaaagcgtctt
ggacagctggctaagtggaaaactgctgaagaagtggctgccctgatccgatcgctgcct
gttgaagagcagcccaaacagattattgtgaccaggaagggcatgttggatccacttgag
gtgcacttgctggacttccccaacattgtaatcaagggctctgagctccagttgcccttc
caggcctgtctgaaagtggagaagtttggtgacctaattctgaaggccacagagcctcag
atggtcctgttcaatctgtatgatgactggttgaagaccatctcctcctacactgcattc
tctcgtttgatcttaatcctgagagcacttcacgtcaacaacgaccgtgccaaagttatc
ctgaagcctgacaagaccacaatcactgagccccaccacatctggcctactctgaccgat
gaggagtggatcaaagtggaggtgcagcttaaagatctcatcctggctgactatggcaag
aagaacaatgtgaatgtggcatctttgacccagtctgaaatcagagacatcatcctgggt
atggagatctctgctccatctcagcagagacagcagatcgctgagatcgagaagcagacc
aaagagcagtctcagctaacggccacacaaactcgcaccgtcaacaaacacggagatgag
attatcacctccaccaccagcaactatgagacgcagaccttctcttccaaaaccgaatgg
agagttagagcgatctctgctgccaacttgcacttacgtactaaccacatctacgtgtca
tcggatgacatcaaagaaacgggctacacttacatcctgcccaagaacgttctgaaaaag
ttcatctgcatctcagatctgcgtgctcagattgcaggttatctatatggaaccagccct
ccagataaccctcaggtaaaggaaatccgctgcatcgtaatggtgccgcagtggggtacg
catcagaccgttcacttgcccaaccagctgccacaacacgagtacttgaaggaaatggag
cctcttggatggatccatacacagcccaatgaatcgcctcagctctctcctcaggatgta
accacccatgcaaaggtcatggctgacaacccatcctgggatggcgagaagactatcatt
attacttgcagtttcacccctggttcctgcacgctgacagcctacaagctgactcccagt
ggatacgaatggggtcgacaaaacacagataagggaaataaccccaaaggctacttgccc
tctcactatgaaagagttcagatgcttttgtctgaccgtttccttggcttcttcatggtg
cctggccaagtctcctggaactacaacttcatgggtgttcgccatgatcccaacatgaag
tatgatctacagctggccaacccgaaggagttctaccatgaagttcacaggccatctcac
ttcctcaactttgcttctctgcaggagggtgaaatctacaatgctgatcgtgaagatatg
tatgcataa
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integrated database retrieval system
