Labeo rohita (rohu): 127177168
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Entry
127177168 CDS
T09007
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04382
Cornified envelope formation
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127177168 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127177168 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127177168 (col4a3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
127177168 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127177168 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127177168 (col4a3)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127177168 (col4a3)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127177168 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127177168
NCBI-ProteinID:
XP_050985226
LinkDB
All DBs
Position
15:30676814..30719096
Genome browser
AA seq
1621 aa
AA seq
DB search
MRNQDATVKDLKDKRVIWGSLDFLVQRELRGIEEKKALLDTVVKMEDLDIQAYLDLKVLG
YGVWTPGFPGPPGLPGFPGKQGPMGAHGLPGCNGTKGEPGPPGFTGPIGPPGLPGSPGIR
GQKGECYHFPLSQQLKGDCGVTGRNGDQGPPGVAGFPGPVGPEGPRGLPGRQGLPGPQGE
KGREGQTMRVPGPRGPKGERGPPGTPGEKGIKLFVSGPKEPKGDTGDPGDTGCPGPPGTR
GCPGPKGQPGEIGYPGGPGKPGKEGLHGEEGPKGIIGDRGFPGPTGIKGERGPKGDCGAP
GAPGEYIVIPEEVKGQKGSCGPPGPPGLRGSEGFCGITGYTGPPGIGIPGPTGTPGSPGY
RGVKGEKGDPAPNSSGPKGFDGPSGKRGPPGDPGPPGISKIDTRWGPKGFTGDIGLTGPQ
GLHGCAGIPGDQGELCRLCASSAEEPGPPGPPGFSGNPGEPGHGGLQGNKGFQGCKGPAG
PPGPSGSLGRPGFPGPPGPKGDQGIRSEFGDKGQKGNCGVEGPLGINGQDGRPGTPGCKG
PAGVKGNPSPPGPKGKLGDPGICGEPGCPGPMGCQGSMGVGKPGPPGEKGCLGVLGRQGN
PGEPGEKGSPGPVQMIPGDPGEPGLPGQPGRPGLQGNEGNTGVQGCPGLNGVKGDKGPSI
PGFPGYTGPKGDKGVKGNPGPPSYGCVGRPGPPGLPGSPGAKGEITFGSPGPKGRQGLPG
DEGSLGPSGICGPPGLSGCPGQKGRDGAPGDSGVRGPDGLPGQAGIPGCCTPGAKGDEGP
LGIRGLDGPTGLPGLKGPRGETGPPGQGLPGIPGVTGIPGKIGDSGLTGVRGRKGFQGRD
GSPGCPGSQGDQGCPGMVGPPGVDGNPGPPGCQGPKGLMGRNGVPGNRGKHGGPGDPGAC
GPKGLPSNVINPGDPGDPGLPGLLGLPGTKGELGLPGNYGQCGKNGIPGRPGPPGPPGDP
GQKGLPGNRGPDGAFGDQGIIGFPGMKGDKGLPGVRGETGTPGVPGPNGPKGIKGDTSCP
GLGPPGEPGQKGEPGCPGRKGEKGDRGICGWSGPPGLSGAPGERGETGVPGVPGPPGAPG
DEGLAGCPGPLGYTGPCGPPGISGSAGDSGPVGFRGDQGRDGIPGPAGDKGDRGPLGIGD
PGPRGIKGEKGAKGCSGPRGPCGPPGPCGQAGDPGTPGKPGEMGPCGITGSPGVCISGPK
GEQGCNGSPGVTGPRGPRGPPGDPGPGIKGDKGDIGPQGLVGQPGCAGDRGVPGLPGRDG
NTGLKGPKGNTGPLGCVGPVGHKGQCGQAGRLGLKGCRGTPGAKGPKGCEVVAQVKSLPG
DRGLPGQFGEKGEPGEPGAQGLEGLIGTQGQKGSSGADGVPGFRGIPGPKGDTGPKGPKG
FRGAMGKGGPKGLRGPPGTKDGFLFTKHSQKISIPDCPHGSKLVYSGYSLLFVNGNNRGH
GQDLGTVGSCLQMFSTMPFLVCNSNKTCQYASRNDYSYWLSTDASMSPTMDLISGESLGN
YISRCSVCEAPTNVIAVHSQTMETPECPRGWFSLWKGYSFVMQTGAGAEGSGQPLVSPGS
CLEEFRMIPYIECQGSGLCNFFSDSYSFWLASLDPSKMFSIPIPQKTRQNDISRCRVCMK
Q
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atgagaaatcaggatgcaactgtcaaggacttaaaggacaaaagggtgatatggggatcc
ctggatttcctggtgcagagggagctcaggggcatcgaggaaaagaaggccctcctggac
accgtggtgaagatggaagacctggatattcaggcctacctggacctaaaggtcctaggg
tacggagtgtggacaccaggattccctggcccaccaggactaccaggatttcctgggaaa
caggggccgatgggggctcatggcctgccaggatgcaacggaacaaagggtgagcctggt
cctccaggctttacagggccgatcggacctcctgggttgccgggaagtccaggaatccga
ggacagaagggagaatgctatcacttcccactctctcaacaactgaaaggagactgtggt
gttacaggaagaaatggagatcaaggaccaccgggagtagcagggtttcctggaccagtt
ggaccagaggggcctagaggcttaccaggaagacaaggcttacctggaccgcaaggagag
aagggtagagagggtcaaaccatgagagtaccaggacccagaggtccaaagggggagagg
ggaccccctggtacaccaggagaaaaaggcataaagttatttgtatcaggaccaaaggag
cctaagggtgacactggggatcctggagacactggatgtcctggcccgcctggtactcgt
ggttgtcctggtcctaaggggcagccaggggaaattgggtatcctgggggtccgggtaaa
cctggaaaggaggggctgcacggagaggaaggccccaagggaatcattggagacagagga
tttccaggacctactggaataaaaggagaaaggggtccaaagggtgactgcggtgcccct
ggtgcccctggagagtacattgtaataccggaagaggtcaaaggtcaaaaaggttcttgt
gggcctccaggacctcctggtctacgaggtagtgaaggtttctgtggtattactggatat
acaggtcctccagggatcggcataccaggacctactggaacaccaggttctccaggctat
agaggtgtgaaaggagaaaaaggagatcctgcacctaacagcagtggacccaaaggattt
gacggcccatcggggaaacgaggaccccctggtgaccccggacctccaggaatttcaaaa
atcgacacccgctggggcccaaaagggttcacgggtgacataggcctaacaggccctcag
ggtctgcacggatgtgctggcataccaggtgaccaaggagagctttgcagactgtgtgct
agttctgctgaagaacctggacctccaggaccacctggattttcaggcaacccaggagag
ccaggtcatggaggacttcaaggcaataaaggattccaaggctgcaaaggtccagcaggt
ccacctggtccttcgggttccttaggtcgtccaggatttccagggcctccagggcccaaa
ggagaccaaggaataaggtctgagtttggggataaaggccagaaaggaaactgtggtgta
gaaggaccactggggataaatggacaagatggcaggccaggcacccctggctgcaaagga
ccagcaggagtaaaaggaaacccaagtcctccaggtcctaagggcaaactaggagatcca
gggatttgtggagagcctggctgcccaggtccaatgggctgccaagggtcaatgggtgtt
gggaaaccagggccacctggagagaaaggatgtttgggagtattgggccggcaaggaaat
cctggagaaccaggtgagaaaggttccccaggaccagtacaaatgattccaggagaccca
ggtgagcctggactgcctggtcaacctggtcgaccaggacttcaaggtaatgaaggtaat
acaggagttcaaggatgcccaggattaaatggggtaaaaggagataaaggaccgtcaatt
ccaggatttcctggatatactggtcccaaaggtgataagggcgtaaaagggaatccaggt
ccacctagttatggatgtgtaggccgtcctggacccccaggactaccaggaagtccaggt
gcaaagggtgaaataacatttggctccccggggccaaagggtcggcagggcttgccagga
gatgaagggagccttggtccatcaggaatttgtggcccccctggattatcaggatgtcca
ggtcaaaaaggaagggatggagcaccaggagacagtggtgtgcggggtcctgatggtttg
cctggacaggctgggattcctggatgctgtacgccaggagccaaaggtgacgaagggccc
ttaggcattagagggctagatggacccactgggctgccagggctgaaggggccacgaggt
gaaactggaccacctggacagggtttacctggtataccaggtgttactggaatacctggg
aaaatcggagattctggtttgactggtgtccgggggcgaaaaggtttccaaggtcgggat
ggttcaccaggttgtccaggttcacagggagatcagggatgtcctggaatggttggtcca
cctggagtagatggaaatcctggaccaccaggatgccagggacccaaaggtttaatgggt
agaaatggagtgccaggaaatcgtggaaaacatgggggtccaggagaccctggagcctgt
ggtccaaagggactgccgtcaaatgttataaaccctggggatcctggtgaccctggccta
ccaggtcttcttggtctacctggcactaaaggggaattaggactcccaggcaattatgga
caatgtggaaagaatggaattccaggcagacctggtccaccaggccctcctggtgaccct
ggccagaagggacttcctggaaatcggggtcctgatggagcctttggtgatcaaggaatt
ataggatttccaggaatgaaaggcgacaaaggtttacctggtgttcgtggggagactggg
actcctggtgtcccaggtccaaatggaccaaaggggatcaaaggtgataccagctgtcct
gggttagggcctccaggagaacccggtcaaaagggtgaaccaggttgtccagggcgtaaa
ggggaaaagggtgacaggggtatatgtgggtggagcgggcccccaggtttatcaggggct
cctggtgaaagaggtgaaactggagtaccaggagtgccaggacccccaggagcccctggt
gatgaaggtttagctgggtgcccaggtcctcttggatatacagggccctgtggtccacca
ggtatttcaggttcagctggagattcagggcctgtaggatttcgtggagaccaaggcagg
gatggcattccaggaccggcaggggacaaaggagatagagggcccctgggaattggagat
cctggcccacgtggcatcaagggtgagaaaggtgcaaaaggctgttctggaccccgaggg
ccatgtggaccaccaggaccctgcggtcaagctggagatcctgggactccgggcaaaccc
ggggaaatggggccatgcgggattacaggttcacctggtgtctgtatcagtggtccaaaa
ggggagcaaggatgtaatggatcacctggggtaacaggacccagaggaccacgtggtcct
cctggcgatccaggtccaggtataaagggagataaaggagacattgggccccaagggcta
gtgggacaacctggttgtgctggtgaccggggagttccagggttgccaggtagagatgga
aatactggtttaaagggtccaaaaggaaatacggggccattggggtgtgttgggccagtc
ggccacaaaggacagtgtggtcaagctgggcgtcttggattaaaaggttgcagaggaact
cctggagctaaagggcctaaaggatgtgaagttgtggctcaggtcaaatctctcccagga
gaccgtggtcttcctggacaatttggggaaaaaggagaaccaggagaaccaggagctcaa
ggcttagaaggcttaataggaacacaaggtcaaaagggcagtagtggtgcagatggagtt
cctggatttagggggatacctggaccgaagggagacactggcccaaaaggaccaaaaggt
tttcgtggtgcgatgggcaaaggaggtcccaagggtttacgaggtccacctgggacaaaa
gacggtttcctttttaccaagcatagtcagaaaataagtataccagactgtcctcatggg
tcaaagcttgtgtactctggatattcgcttctcttcgtcaacggcaataaccgtggacat
gggcaagacctagggactgtgggaagctgtttgcagatgttctccaccatgccctttctg
gtgtgcaattccaacaaaacttgtcagtacgcctctcgaaatgattactcctattggctg
tctacagatgcttccatgtctccaaccatggacttgatatctggtgaatcgttgggtaat
tatatcagcaggtgttcagtatgtgaggcaccaactaatgtaatagcagtccacagccag
accatggaaaccccagagtgccctagaggatggttttcactatggaaaggttactccttt
gtaatgcaaacgggtgctggcgcagaaggttccgggcagccgctggtctctcctggatct
tgtctggaagaattccggatgattccatacattgagtgccagggcagtggcctctgtaac
ttcttttctgattcctacagcttctggcttgcatcacttgatcctagcaaaatgttcagt
attccaatcccccagaaaacaagacagaatgacatcagccgctgtcgggtctgtatgaag
cagtag
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integrated database retrieval system
