KEGG   Labeo rohita (rohu): 127177169
Entry
127177169         CDS       T09007                                 
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
  KO
K06237  collagen type IV alpha
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh04382  Cornified envelope formation
lroh04510  Focal adhesion
lroh04512  ECM-receptor interaction
lroh04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    127177169 (col4a4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    127177169 (col4a4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    127177169 (col4a4)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    127177169 (col4a4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lroh04147]
    127177169 (col4a4)
   00536 Glycosaminoglycan binding proteins [BR:lroh00536]
    127177169 (col4a4)
Exosome [BR:lroh04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   127177169 (col4a4)
Glycosaminoglycan binding proteins [BR:lroh00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   127177169 (col4a4)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 127177169
NCBI-ProteinID: XP_050985228
LinkDB
Position
15:complement(30621224..30676766)
AA seq 1576 aa
MPGFAGPKGDQGDKGDIGYSGLDGVPGHPGPGGLPGLPGKDGCNGTRGERGLNGEIGQPG
PPGPRGVTGLKGYKGETCMREIFTPGIPGAGGQPGIPGPEGLRGVFGPQGLQGRVGPDGY
IGFKGLPGPRGLPGDPGRSLPGPKGDEGDQGSKGVPGPFEYVEPNPEDCIKGDKGWKGQK
GICGPRGLEGYAGPPAEKGEKGVPGIAGPRGMPGYPGRRGVQGYKGIFGDNGLPGLFGNP
GPKGFPGDPGPKGNPEYCYNRMIGGCGDPGLPGAAGPPGDRGGIGIPGPPGYPGASITGS
VGESGLQGLNGLKGEKGDPGTIIGDFPNYGEPGKPGHPGPKGLKGSPGTPGFYCLPGERG
DTGHNGIRGTPGIKGVQGRKGPDGGCACEPLGDLPGYPGPPGPPGVCGNPGLKGLRGPRG
DIGPYGERGVAGVTGPRGFAGVRGLKGQKGDVMVMCQKGDKGDAGSVGPCGRPGYNGRRG
ADGKEGPPGDPGPLGDSIVGPPGGRGCPGAPGVKGSRGPSGPPGPNMMGSIGRRGEQGDP
GPQGQTGPPGPKGIQGDTLPCGPATNGAPGCKGMPGYKGEKGMPGNPGNIGQNGLCGPKG
ECGDPGDIWLAGCQGPVGLSGDPGENGPEGISISGSSGPTGYRGPQGLKGCSGDSVIGAP
GPLGPHGIQGSQGPKGVPGPPGPIGLQGPSGTPGFPGRKGEKGICGTPGAPGCPGPRPEQ
CAKGQAGLCGKPGPRGFTGQRGCPGERGSPGEAGSPCIGAKGECGRPGIPGNQGCSGLQG
PLGLNGDNGNPGNPGPKGLCGFPGQDGFPGNLGKTGPLGAPGSKGLRGLNGYPGCPGVNG
TKGQKGCCGQPGPPGDLISVPVKGQIGPPGLHGQNGLFGERGNKGDPGPPGPPGYPGRNG
SPGFECGQRGLPGVPGQPGEPGACGQRGLIGTVGVPGCNGDPGDPGLSGQPGTPGFPGFD
GPKGDKGESIGEPGQTGQRGPCGDNGVTAPPGARGDFGDPGPQGPRGICGPPGPCGNNGL
TGPQGVVGPPGPCGRHGPEGPVGPPGPPGPKGNQGCSGLRGPTGPPGIHGLDGLKGDKGE
KGYRGPELNGERGCNGVNGDRGIPGNPGLRGPSKPGVRGPNGQNGPRGDPGPMGPVGFRG
EECKTPNPGPCGDRGYAGLDGCPGPEGEKGEAGSVFTEAGNFGDPGCPGSPGFKGEKGIC
GASGLRGCDGLEGPKGETGQCGLMGLPGPSGPVGDCGPPGRCGAKGDRGDPGPKGEPGTV
RLPRTHCPVIQGPPGPPGSPGQAGEDGEPGPNGFGGQKGTKGPEGDLGSSGPSGLEGPDG
QRGEPGESGEQGEEGSEGPRGPDGDLGPTSLSFGFLLVVHSQSDVVPSCPSGLPELWNGF
SLLYLEGQEKAHSQDLGQAGSCLRVFNTMPFSCCNMNNCDYASRNDKSYWLSTNASIPGD
SILMGSEIRQHISRCVVCEASTPTITLHSQSGEDPPCPYNWKNLWSGYSFLMHTGSGDEG
GGQSLTSTGSCLKDFRSQPFVECQGSHGTCQYSPTFFSFWLTRVNMQNFDDLPYNNVLNG
DNHNSVSTCSVCMKSN
NT seq 4731 nt   +upstreamnt  +downstreamnt
atgcctggattcgctggcccgaaaggagaccagggcgataaaggagatataggttactct
gggttagatggagtgcctggtcatccaggtcctggtggtctccctgggcttccagggaag
gatggctgtaacggaacaaggggtgaacgagggttgaatggtgagataggacaacctggc
cccccaggacccaggggtgtcaccgggttaaaaggatacaaaggagaaacctgtatgaga
gaaatatttactcctggaatacctggtgctggtggacaacctggaatacctggaccagaa
ggactgagaggggtctttggcccacaaggtctacaaggacgagttggacctgatggatat
ataggctttaaaggattaccaggtccaagaggcctaccgggagacccaggaagatcactg
cctggaccaaaaggagatgagggggaccagggttctaagggtgtaccaggtccatttgaa
tatgtggagcccaatccagaagactgtataaaaggcgacaaggggtggaaaggacaaaaa
ggaatttgtggaccacgtggcctagagggttatgcagggcctccagcagaaaaaggggag
aaaggcgtacctggaatagctggtcccagaggcatgcctggatatccaggcagacgaggc
gttcaaggatataaggggatatttggggataatggtctccctggtctatttggcaaccca
gggccaaagggcttcccaggtgaccccggacctaaaggaaacccagagtactgttacaac
cgtatgatcggtggatgtggagatcctgggcttcctggtgcagccggaccacctggggat
agaggggggataggtatacctggaccccctggttatccaggagcatctataacaggttca
gtgggtgaatctggtctgcagggtcttaatggactcaaaggagaaaaaggagacccagga
acaataattggcgattttccaaactatggggaacctggaaaaccgggccatcctggaccc
aaaggactaaaaggaagtcctgggactcctggtttctactgcctgcctggtgagcgtgga
gataccggacacaatggaattagaggaactcctggaataaaaggtgttcaggggagaaaa
ggtcctgatgggggatgtgcatgtgaaccccttggtgatctacctggctatcctggcccc
ccaggccctccgggcgtctgtggtaatcctgggctaaaagggttacggggtcctcgtggt
gatattggaccctacggagaaaggggtgtggcgggtgtaactggtcccagaggctttgct
ggtgtcagagggcttaaaggacagaaaggagatgttatggtgatgtgccaaaagggggat
aaaggtgatgcaggatctgttggaccatgtggaagaccagggtataatgggaggagaggg
gctgatgggaaggagggtccccctggagatcctggacctctgggagatagtattgttggt
ccgccaggtggcagggggtgtccaggagcccctggtgtgaaaggctccagaggtccatct
ggtcctcctggccctaatatgatggggtcaattgggcgacgaggggaacagggggaccca
ggacctcaaggacagacaggaccccctggtcctaaaggcattcaaggtgatacattgcct
tgtgggcctgccacaaatggagcccctggttgcaaaggaatgcctggttataaaggtgag
aaaggtatgcctggaaatccaggaaacataggacaaaatggactatgtggtcccaaggga
gagtgtggagaccctggagatatttggttagcaggatgtcaaggtccggttggattatca
ggagatccgggtgaaaatggcccagaaggcatcagtattagtggctcatctggcccaact
ggttatcgtggaccccagggtctgaaagggtgttctggagactctgttataggggcccca
ggaccgttggggccccatgggattcagggaagtcagggccctaaaggtgttccgggacct
cctggaccaattggattgcaaggtccatctggaactcctggatttcctggtagaaaaggg
gaaaagggaatatgtggtacaccaggagctcctggttgcccaggtccgagaccagagcag
tgtgccaaaggacaagctgggttatgtggtaaaccaggaccacgaggcttcactggacag
aggggctgccctggagagagaggatcacctggggaggcaggatctccatgcattggagcc
aaaggagaatgtggtaggcctggtattccaggcaatcaaggatgctcaggccttcaggga
cctttaggactcaacggggacaatggaaaccctggaaaccctggaccaaagggtttgtgt
ggatttcctggtcaagatggctttcctggtaacttagggaagaccggccctttaggggct
cctggatcgaaaggcttaaggggtctcaatggatatccaggttgtccaggggtaaacgga
accaagggccagaaaggatgttgtgggcaaccaggacctccaggagatctgatttcagtc
ccagtgaaaggccagatagggccacctggacttcatgggcagaatggtctttttggagaa
aggggtaacaagggtgacccaggtccgcctggaccacctgggtatccgggacgtaatgga
tctcctgggtttgaatgtggccagcgtggactgccaggcgttcctgggcagcctggtgag
cctggtgcatgtgggcagcgtgggctaataggaactgtgggagtcccaggatgtaatggt
gatccaggtgatcctggattgtctggtcagccaggaacccctggtttccctgggtttgat
ggtcctaaaggcgacaaaggtgaatctattggtgaaccaggacaaacaggtcaaagaggg
ccatgtggagacaacggcgtgacagctccccctggcgccagaggagacttcggtgaccct
ggtccacaagggcctaggggaatctgtggtccacctggaccatgtgggaacaatggcctg
actgggcctcaaggagtcgttgggcccccaggtccatgtggaagacatggtccagaaggt
cctgtggggcctccaggtccaccgggccctaaaggaaaccaaggatgcagtggccttaga
ggacctacaggccccccaggtatccatggactggacggcctgaagggggacaagggtgaa
aagggatatcgaggaccggaattaaatggtgaaaggggctgtaatggggtgaatggagac
aggggcattccaggaaacccagggttgagaggcccatcaaaaccaggtgttcgaggtcca
aacggacagaatggcccccgaggagaccctggtccaatgggtcctgtaggctttcgtggt
gaagaatgtaagactcctaaccctggaccttgtggagatcgaggttatgctgggctagat
ggatgtccagggcccgagggagaaaaaggagaggcaggcagtgtgttcacagaggctggt
aattttggagacccaggttgtcctgggtcaccagggtttaaaggagaaaaaggaatctgt
ggggccagtggcctccgagggtgtgacggcctagaaggtccaaaaggtgaaacaggacaa
tgtggacttatgggtcttccgggaccttctggccctgtaggtgattgtgggcccccagga
cgctgtggtgcaaaaggagacagaggagacccaggcccaaaaggagagcctgggactgtc
agactccctagaactcattgtcctgttattcagggtcctcctggtcctcctggttctcct
ggtcaggctggtgaagatggtgaacctggacctaatggctttgggggtcagaaaggcaca
aagggaccagaaggagatcttggatccagtggacctagcgggctagaaggaccagatgga
caacgtggagagcctggagagagcggcgagcaaggagaagagggctcagagggaccccgg
ggacctgatggagatctgggtcctacatctctttcctttggcttccttttggtggtgcac
agccagtctgatgttgtgcccagttgtccttcgggcctaccagagttatggaacggcttc
agtctactatatttggagggtcaggagaaagcgcattcacaagatctgggtcaggcaggt
tcgtgtttacgtgtgttcaacaccatgccgttctcctgctgcaatatgaacaactgtgat
tacgccagtcgcaacgacaaatcctattggctgtctacaaatgcctcaattcccggggat
tcgatcctgatggggtcggaaattcgacaacacatcagcaggtgtgtggtgtgtgaggcg
tcaacgccaaccattacattacacagtcaaagtggggaagatccaccatgtccatacaac
tggaaaaatctctggtccggatattcattccttatgcatacaggatcaggggacgaggga
ggaggacagtctctgacatcaacaggaagctgtttaaaggacttccgcagtcaaccgttc
gtggagtgccaaggttcacatggcacgtgccaatattctcccaccttcttcagtttctgg
ctgactcgagtgaacatgcagaactttgatgaccttccttacaataatgtgctcaacgga
gacaatcacaacagcgtcagcacatgcagtgtctgcatgaagagcaactga

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