Labeo rohita (rohu): 127177304
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Entry
127177304 CDS
T09007
Symbol
arhgef12a
Name
(RefSeq) LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor 12
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04270
Vascular smooth muscle contraction
lroh04625
C-type lectin receptor signaling pathway
lroh04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
127177304 (arhgef12a)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
127177304 (arhgef12a)
09153 Circulatory system
04270 Vascular smooth muscle contraction
127177304 (arhgef12a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127177304 (arhgef12a)
Membrane trafficking [BR:
lroh04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
127177304 (arhgef12a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
127177304
NCBI-ProteinID:
XP_050985477
LinkDB
All DBs
Position
15:21077699..21143816
Genome browser
AA seq
1389 aa
AA seq
DB search
MSDTRSTVTDRTSSILSRDHPPNKSPKSDKLPGTPTHEFDPTDVLVQKSGFVVADRRPES
CGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKQDGAAMRAGVQTGDRIIKVNGTLVTQS
NHVEVVKLIKSGSYVALTVLGRPPGLPQIPLSEVDVGLLSPGGYGDPFVTSPNSYNAVER
TSSPLVSWEENSSPLNQRMDNKRMLFKEQQDIQGLKEDYSRTPTPKPLRDIQEAKKHIPH
QQGHTHESLCLRNSEDGFWVDEDQYKGDLSPECFWSGSSVSSIQRRFYPASPESQRDSSC
SSPKSNPRDSLNSCPSPDVEDCSDLDSRFSSTIGSPPSRLASEIIAAEDDDFDTEQEQVN
GQCSCFQSIELLKTRPAHLAAFLHHVISQFDPAPLLCYLYADLYKQTNSKETRRIFMDFL
TFFLDRGANLKVAVPESISSELERRRPELIPEELHRQYIQTMQETLLPDVQRNLEDFRQK
RSMGLTLADVELSRLDSEQPALERERSCAENILTKIDDVLLTSQPTEEEKCNTLQYVIFM
YMKHLGVRVKEQRNLESKRVRINFLPSKLRKSKTEKEGEEKLKRPRFPIRVPPRWPSRLD
SVPSGRVGDNIKHRPQKQMSQPALGGSELIDGGRLRGSQSSEGSDLLQSPSLITSPPFSA
PFGSLSDPSARDPEFCMSPSAVVPRLSDGLQSGDVLDSIYPPCDYIPYNMDQLEEDGDRV
LDGGTPKLSRRFEELQSEDDQGSDVYSDVDPPNWQQLVGRDVLAGLTPHEIKRQEVINEL
FYTERAHVRMLKVLDSVFYQKLTRDNILPPADIKNIFTNLEEIIQLHMRIADQMTAIRKK
NELTVIDHIGDELLSWFSGGEEEKIKQAVGTFCSNQPFALELIKSRQKKDQRFTSFMQEA
ESNRLCRRLQLKDIIPAEMQRFTKYPLLLDNIAKYTDESEEKDKVRRAAECCRHILSHVN
QSVKESENKQRLEDYQRRLDLSSLKQSENPMISEFKNLDLTKRKMVHEGPLSWKINKDKT
IELYTLLLEDILVLLQKQDERFILRCHSKNLAGTADTKHIFSPIIKLSTVLVRSVATDNR
SFFVISMSKNGAQIYELMAQTVSEQRMWQRQIAQRAEVVNAKPHSVIPLPQHDVDRDSVE
LSKFSKGSERISTGSIQSAEKDSEFSPTAALRDCVPDANPXEEDQVPRAGRDASYLDSEL
LNGRDADSLSCSSKAEEALKTLAALKQVLVTQLMAQDEGERLGRSAGSRLLRTTSLRTPV
EHSSARTPSRAQDYTCGDTGFYECPEDYAYLVLEGYGGPCESSTDDDIQVRRKESSLAHS
CAADSGISLKFSSPSSGSTSRLSRQVLSHLRCLQATLNQLKEMETKYYNLLRQRPVGSAA
DTDESRDKK
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacggtccacagtcactgacagaaccagtagcattctcagcagagaccat
cctcccaacaagagtcccaaaagcgataagctgcccggtaccccaacacacgagtttgac
cctacagacgtgctggtgcagaagagtggatttgtagtggctgacaggagacctgagtct
tgtgggctggttcaaagatgcgtgatcattcagaaagatgagaacggctttgggctgacc
gtcagtggggacaaccctgttttcgtgcagctcgtcaaacaagatggcgctgccatgcgt
gcaggtgttcagacgggggacaggatcattaaggtgaacgggacattggtgacgcaatca
aaccatgttgaagtggtgaaattaatcaaatccggctcatatgtggccctcacagtatta
ggccggcctcccgggttgccccagatccccctctctgaggtagatgtgggtctcttgtca
ccggggggttatggggacccttttgttacatctcccaactcttacaatgcagtggaacgt
acctcctctcctcttgtatcatgggaagagaacagttctccactcaaccaaagaatggac
aacaaaaggatgctgttcaaggagcaacaggacatacagggactgaaggaggactacagt
agaactcctacacccaaaccactacgggacatccaggaagccaagaagcacattccacat
cagcagggccatacacatgaaagtctgtgtctcaggaacagtgaagatggcttttgggtg
gatgaggatcagtataagggagatttgagcccggagtgtttttggagtggaagttcagtg
tcatctatccagcgccggttctacccggcctcaccagagagccaaagggactccagctgt
tccagtccgaagagcaaccccagagacagcctcaactcctgcccatcccctgatgtcgag
gactgctccgacctggattctcgtttctcatccaccatagggagtccaccctcccgcctg
gcttcagagatcattgctgctgaagatgatgactttgacacagagcaggagcaggtgaat
ggccagtgtagctgcttccagagtatcgagctgctcaagactcgccctgctcatcttgct
gcctttctgcaccatgtgatctctcagtttgaccctgcacctctgctctgctacctgtac
gctgacctctacaaacagaccaactccaaagaaacacggcgcatcttcatggacttcttg
acgttcttcttagaccggggggcaaatttgaaagtcgctgtgcctgaatccatctcctct
gagctcgagcgacggagaccagagctgattcctgaggaattacacaggcaatatatacag
acaatgcaggaaactctccttccggatgtacagagaaacttggaggacttcaggcagaag
cgcagtatgggcttgaccttggctgatgtagagctgtctcgtctggactctgaacagccg
gctctggagagagaaagatcatgcgctgaaaacatcctcaccaaaatagatgacgttctg
ctgacttcacaacccacagaagaggagaaatgcaacactttacagtatgtgatctttatg
tacatgaagcatcttggagttcgggtgaaagagcaacgaaacctggagtccaaacgagtt
cgaattaattttcttccttccaaactaaggaaaagcaaaacagagaaggaaggggaggag
aaactgaaaaggcctcgctttcccatccgggtgcccccgcggtggcccagtcgcctcgat
tcagtaccatctgggagggtcggggacaacatcaagcatcggcctcagaagcagatgtct
cagccagctttgggcgggtcagagctgatagatggtggacgtctgcggggcagtcagtcg
agtgagggctcggacctcctacagagcccgagtttgatcacctctccccccttcagcgcc
cccttcggttcactgtcagacccctctgccagggatccagagttttgtatgagcccatct
gcggtcgttccccggctcagtgatgggctgcagtctggagatgtgctggacagcatctac
ccaccttgtgactacatcccatacaacatggaccagctagaggaagatggagacagagtc
cttgatgggggcacacctaaactcagtagaaggtttgaagagctgcagagcgaggatgat
caggggagtgatgtttactctgatgttgatcctccaaactggcagcagctggtcgggcgt
gatgttttagcaggtctgacaccccacgagatcaagagacaagaagtcattaatgaacta
ttctacacggagcgagcccacgtacgcatgctgaaggtcctagacagtgtcttctaccag
aaactcacccgagacaacatactgccccctgctgacatcaagaacatattcaccaacctg
gaggaaatcatccagctgcatatgaggatagcggatcaaatgacagcgatacgcaagaag
aacgagttgacggtcatcgaccacataggagatgagttgctgtcttggttcagtggtgga
gaggaggagaagatcaagcaagcagtgggcactttctgcagtaaccagcccttcgccctg
gagctcatcaaatcccggcagaagaaggaccagcgttttacctccttcatgcaggaggct
gaaagcaatcgcctgtgtcgacgattacagctaaaggacatcatccctgcagagatgcag
aggttcaccaagtaccccttactgttggacaacattgccaagtacacagatgagtcagag
gagaaagacaaagtgagacgagcagccgaatgctgtcgacacattctcagccacgtcaac
cagtccgtgaaggagtccgagaataaacagagactggaggactaccagagacggctggac
ctgtcttccctcaagcaaagtgagaaccccatgatctcggagttcaagaacctagatctc
actaaaaggaagatggtccacgagggccctctgtcctggaagattaacaaagacaaaact
attgagctgtatactttactcctggaagacattctggtgttgctgcagaagcaggacgag
cgttttattctccggtgtcacagcaagaacctcgcaggaacggctgacacgaaacacata
ttcagtcccatcatcaaactcagcactgtgttggtgcgctcggtagcgacagataacaga
tcgttctttgtgatctccatgtccaaaaatggagctcagatttatgagctgatggcccaa
acagtgtccgagcagagaatgtggcaacggcagattgctcagagggcagaggttgtgaac
gccaaaccccacagcgtcattcctttgcctcagcacgacgttgacagagacagcgtcgag
ttaagcaagttcagcaaaggctctgaacggatctccacaggaagcatccagtccgcagag
aaagacagcgaattttcgcccacggcagccctgcgggattgtgtcccggacgccaaccct
ngggaagaggaccaggtcccgagagctggcagggacgcctcgtatctggactctgaactc
ttgaacggcagggacgcagactctctatcctgttcgtcgaaagcagaggaggctcttaaa
accctggcggcgctgaagcaggtgctggtgactcagctgatggctcaggatgagggcgaa
cgattgggtcgatcggcaggcagccgtctcctcaggaccacctctctacgcacgccggtg
gagcacagctctgctcgcacccctagtagagctcaggactacacctgtggagatacgggc
ttctacgagtgcccagaggactacgcttatctggttctggaggggtacggtggcccatgt
gagagcagcacagatgacgatattcaggttcggagaaaggagtcaagtttggcccacagc
tgtgctgctgactcgggcatcagtctgaagttctcctcgccctcctcaggcagcacatct
cggctcagcagacaggtcctctcacatctgcgctgcctgcaggccaccctcaaccagctc
aaggagatggaaacaaagtattataatctactccgccaaaggcccgtcgggtcagccgca
gatacggacgagagcagagataagaaatag
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