Labeo rohita (rohu): 127177314
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Entry
127177314 CDS
T09007
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03022
Basal transcription factors
lroh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127177314 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
127177314 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127177314 (ercc2)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127177314 (ercc2)
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127177314 (ercc2)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127177314 (ercc2)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127177314 (ercc2)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
127177314 (ercc2)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127177314 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
Brix
Motif
Other DBs
NCBI-GeneID:
127177314
NCBI-ProteinID:
XP_050985495
LinkDB
All DBs
Position
15:complement(21992742..22000355)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
KAYPLEVTKLVYCSRTVPEIEKVVEELRKLMDYYAKQTKTKNDFLALALSSRKNLCIHPE
VSSLRFGKEVDGKCHSLTASYIRAQHHSNPNQPVCQFYEKFDAVGRQVPIPPGIYNLDDL
KDFGRRKGWCPYFLARYAILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEANVARE
TDIYLSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFLKD
IYEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSAITLISHFATLVSTYSKGFTIIIEP
FEDKTPTIANPVLHFSCMDPSIAIKPVFGRFQSVIITSGTLSPLDIYPRILDFRPVTMAS
FTMTLARTCLCPLIVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYIYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHLTDGSLNLTTDETVQLAKHF
LRQMAQPFRREDQLGLSLLTLEQLQSEDMLKKIAQIAQQA
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgaatatcgacgggttattagtctactttccgtatgactatatttatcctgaa
caatactcgtacatgcttgagctgaagaggacgctggatgctaagggccatggagttctc
gagatgccctcaggaacaggaaaaacaatttctcttctttcgctcattgttgcttaccag
aaggcttaccctttggaagtcaccaagcttgtctactgctctcgcactgtgcctgagata
gagaaggttgtggaggagctaaggaaactaatggattattatgcaaagcaaaccaaaacg
aaaaatgactttcttgcactggcactttcttcacggaaaaacctgtgcattcatcctgag
gtgagctctctgcgttttggaaaagaagtagatggaaagtgtcacagtctgacagcatcg
tatattcgagcacagcatcacagtaacccaaatcaacctgtctgccagttctatgagaaa
tttgatgcagtaggcagacaggtgcccattccccctggtatatataacttggatgatctg
aaagactttgggcgtagaaaaggctggtgtccgtacttcctggcacgatatgcaattctt
cacgcaaacattgtagtgtacagctaccattacttactagatccaaaaattgcagacctg
gtgtcgaaagagcttgcaaagaaatctgtggttgtgttcgacgaggctcacaacatcgat
aatgtgtgtattgattccatgagcgtcaacattaccaggaggacactagatcgctgtcag
acaaatgtggaaaccctgcaaaacaccattagcagaattaaggaaacagatgctgccaaa
ctccgagaagaatacaggagattagttgagggtcttaaagaagcaaatgttgccagagaa
actgacatctatctgtccaacccagttctgccagatgaaatcctccaagaggctgtacct
ggcagcatccgcactgcagagcattttgttggctttatgaaacgctttctcgagtaccta
aaggcacgtttgcggatccatcatgtggtgcaggagagcgctcctcagttcctcaaagac
atctatgagaaggtctgcattgatcgcaaacccctgagattttgtgctgagaggttgcgc
tcactgctgaggacgctggagattgccgacatcgctgacttctcagccattaccctgatc
tcacattttgccacacttgtcagcacctacagcaaaggcttcaccatcatcattgagcct
tttgaagataaaacaccaacaatagcaaatcctgttcttcacttcagttgcatggacccc
tcaatcgccataaagccagtgtttggccgctttcagtcagtcattatcacatcagggacg
ctctctccactggatatctacccacgcatccttgatttccgcccagtcactatggcatct
ttcaccatgacactggcacgaacctgtctgtgccctcttattgttggtcgagggaatgat
caggtagcgatgacttccaagtttgagaccagagaagattttgctgtgatccgcaactat
ggaaacctgctgctggaaatgtccgccatcgttcctgatggaatcgttgcattcttcaca
agctacatttacatggagaacattgtagcctcctggtatgaacagggcatccttgagaac
atccaaagaaacaagcttattttcatagaaacccaagatgcagccgagaccagcatggcc
ctggagaagtatcaggaggcctgtgagaacggcagaggagcaattctgctctcagtggca
agagggaaagtgtcagaggggattgactttgttcatcattttggtcgtgccgttatcatg
tttggagtgccttacgtttacacccagagccgaatcctcaaggctaggttggaatacctc
agagaccaatttcaaatccgggaaaatgattttctgacatttgatgcgatgcgccacgcg
gctcagtgtgtgggcagagccatccgaggcaaaacagactacggcctgatgatcttcgct
gataagcgttacgcacgagcggataaacgaggaaagctgccccgctggatccaggaacac
cttacagatggaagcctaaatctgaccactgatgagactgtgcagttagccaagcacttt
cttcgacagatggcccagcccttcagacgggaggatcagttgggtctgtctctgctgacc
ctggaacaactgcagtctgaggacatgcttaagaagattgctcagatcgctcaacaagcc
tga
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