Labeo rohita (rohu): 127177326
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Entry
127177326 CDS
T09007
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04136
Autophagy - other
lroh04140
Autophagy - animal
lroh04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127177326 (atg16l1)
04136 Autophagy - other
127177326 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
127177326 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127177326 (atg16l1)
03029 Mitochondrial biogenesis [BR:
lroh03029
]
127177326 (atg16l1)
Membrane trafficking [BR:
lroh04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
127177326 (atg16l1)
Others
Rab GTPases of specific organelles
Auto phagosome
127177326 (atg16l1)
Mitochondrial biogenesis [BR:
lroh03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
127177326 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
ANAPC4_WD40
NBCH_WD40
eIF2A
Ge1_WD40
Nup160
KASH_CCD
PspA_IM30
DUF6212
Cytochrom_D1
Leu_zip
Motif
Other DBs
NCBI-GeneID:
127177326
NCBI-ProteinID:
XP_050985508
LinkDB
All DBs
Position
15:36684939..36705950
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AA seq
621 aa
AA seq
DB search
MAGRRVECLWKRHVVEQLKQRDRVQRQAFEEIIHQYNRLLEKSDLQVVFSERLQTEKYEQ
QNRHDLSPGVEGGRSDSLQQEMAQMRIKHQEELTELHKKRGELAQSVIELNNQIQQKDKE
IQSNEAKMLEYQQQISHLEGECRELRNSLADLERANQTLRDEYDALQITFSALEEKLRKT
TEENQELVTRWMAEKAQEANRLNAENEKDSRRRQAKLQKDLADAAKEPLPIDPDDDIEVL
SEDVGKGTGETSPTRQISRTPSRRVSQPPPPAGLLDSISNIFGLSDSVQPGFVPSDSRRR
RSVNSFSSSPETAEVPSACADVRVPSTALHIFDAHDGEVNAVRFSPGSRLLATGGMDRRV
KLWEVISGRCEPKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTG
HSGKVLSARFLLDNARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGH
FDKKVRFWDIRSESIVRELELLGRVTSLDLNHDRTELLTCSRDDLVKIIDLRSNAVRQTF
NAQGFKCGSDFTRVTFSPDGSYVAAGSADGVLYIWNVLTGKLDKTLDKGHSSAINSVSWS
PSGAYVASVEKGSKAVLWSDM
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggcgggacgtagagtcgaatgtttgtggaaacgtcacgttgtcgagcagctgaagcag
agagacagagttcaacgtcaggcctttgaggagatcatacatcagtataaccggttatta
gagaagtctgatcttcaggttgttttttctgagcgtctccagacagagaaatatgagcaa
cagaacagacacgacctcagtcccggcgtagagggcggccgcagtgattccctgcagcag
gaaatggctcagatgagaatcaagcatcaagaggagctgacggagctgcacaagaaacga
ggagagttggcccagagtgtgattgaactaaacaaccagattcagcagaaagacaaagag
atccagagtaatgaagccaagatgttggagtatcagcagcagatctcccatctggaaggc
gagtgtcgtgagctccgcaactctctggccgacctggaacgagccaatcagacgctacga
gatgagtacgatgccctgcagatcacattcagcgccctggaggagaaactccggaaaacc
accgaggagaaccaggagctggtgacacgctggatggccgagaaagcgcaggaggccaac
agactcaacgctgagaacgagaaagactccaggcgcagacaggcgaaactgcagaaggat
ttggcagacgcagcaaaggaacctcttcctatagacccagatgatgacatcgaagttctc
tcagaggatgttgggaagggaacgggtgaaacgtcaccgaccagacagatcagtcgcaca
cccagcagacgagtgtctcagcctcctcctcctgccggactgctggattccatctctaat
atctttggcttgtctgattctgtccaacctggtttcgtcccatctgactccagaagacgt
cgctctgttaattcgttcagctcgtctcctgagaccgcggaggtgccgtcggcatgcgct
gatgtcagagttccctccactgcgctacacatctttgacgcccatgatggagaagtgaac
gccgtgaggtttagtcccggttcccgtctgcttgccacaggaggaatggaccgcagagtc
aagctctgggaggtcatatctgggaggtgtgaacctaaaggtgcgctgacaggcagtaat
gctggaatcaccagtatagagtttgatagtgcgggctcgtatctactggctgcgtcaaat
gattttgccagcagaatctggacggttgatgattacagactgcggcacacactcacaggg
cacagcgggaaggttttatccgctcgctttctcctcgataacgctcgaatcgtctccggc
agctacgatcgaacgctcaagctctgggacttacgcagcaaagtctgcatgaagacggtg
tttgctggttctagctgtaatgacatcgtctgcacggagcagtgtgtgatgagcggacac
tttgataagaaagttcgtttctgggacatcaggtcggagagcatcgtgcgtgagctggag
ttgctgggacgtgttacgtctttggacctcaaccacgaccggaccgagctgctgacctgc
tctcgtgacgacctggtgaaaataatcgatctgcgcagtaatgcagtgcgacagacgttt
aatgctcaaggtttcaagtgtggttcagacttcaccagagtcacattcagccctgatgga
agttacgtggcggccggttctgcagacggcgttctgtacatttggaacgttctaacgggg
aaactagacaaaacccttgataagggtcacagttctgccataaattctgtgtcctggtct
ccatcgggtgcatatgtggccagcgttgaaaaaggcagcaaggctgtgctttggtctgac
atgtga
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