Labeo rohita (rohu): 127177383
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Entry
127177383 CDS
T09007
Symbol
frem2b
Name
(RefSeq) FRAS1-related extracellular matrix protein 2b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127177383 (frem2b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
lroh04091
]
127177383 (frem2b)
Lectins [BR:
lroh04091
]
C-Type lectins
Lecticans
127177383 (frem2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Big_9
TMEM154
Motif
Other DBs
NCBI-GeneID:
127177383
NCBI-ProteinID:
XP_050985596
LinkDB
All DBs
Position
15:complement(28521627..28614742)
Genome browser
AA seq
3112 aa
AA seq
DB search
MARSITEQRQRRASHVHLFLFIVTLLCDASAQGFESLGLTYGLRSELSEDAILVANNGIR
VPFGRSVYIDPINDLVIQVQPGDKCTVTVLDNDPLSQRPGQLSPKKFPCEFGPNDVKYSH
FGSRSPSKDRVRLQLRYDTQTDTVIIPFMMEVEVIFTQLEILTKHMPVVVEKLLGISNPI
DKKILEFTYDRNAHLCKVTSLASGSSLPRYGKLIDNGKLGKPVDCDEFVRMDIRYQHTFA
HRSPNRDYIPMYLELQDKEANVLKQEFFQIVVLIKEGEENTAPKPSFVAMMMMEVDQFVM
TAITHDMLAAEDVESNPDDLIFNITSPLSFEEGYIVSTDDRNLPITSFYQADLKDLKIAY
KPPSVDSDVERIFQIEFEVVDTEGAISDPFAFMIVVKPMNTLAPVVTRNTGQLLYEGQSR
PLSSSQNLQISDEDNLDNVQITVINGLRHGELTVLGSRRKFFTPADLDVGSVIYQHDGSD
TYSDNIIFRMTDGKNEVEFLFPITVVPTDDEPPIINANTGLILFKNQMMPISPLMLSAAD
IDSEDSTIKFIIVPPYSTIGEVILRQSDAPEDPSTWKFNSEDEMYEKVVTEWFQHDITEG
KLFYRHVGPHNTKTVMDQFVFRVQDDNDPPNHSGENSFIIKVLPIDDIPPELYPGTTLQV
TVHEYQLTYFRKKFLRYTDLDSEDRDLKYTITQPPTDTDENSPGILGSIVLTESPNSEVT
EFTQAQINHHKIAYKPPDLELGITPHVVQFHYKVEDTAGNVANGVFTIFLQPVDNKPPQI
TNTGFTIQERGAHVITRAELDTTDADTDSSQILFTITQPPKHGQVKYTFTDMTKGNSFNL
DDISNGRISYIHNGDESTSDFFQLDVSDGVHVVTITVRINVKPVDDEAPTISLPEGTIGS
YIDVLENGATEITTNVIQGRDEDTDDLRLTFIVEDPPVFGEILVNGVPSNRFTQADIISG
LVIYAHNSGEIGLTTKHDFFNLTLTDMSDEWTVGGNTIKGVRVQVTILPLDSQAPEVFVG
PQFTVVEGEKNIIDISHISANDIDTPNDDLLCTIIVQPTSGYVENISPAPGSEKSRSGIA
ISAFTIKDIRENHIYYVQSIHKGVEPVEDRFTFRCSDGINFSERHFFPIVIIPSNDEKPE
IHMREFVVMEGMNIVIDTPILNGADADVPAGELTFIISKPPKHGYILNQLTSGTVPVTNF
TLDQIREASSIVYEHDDSETTEDSFEVLLTDGKFTVEKTVMIMVILVDDETPRMAINDGL
EIEVGEVKIISNKVLKATDLDTEDSVLTYIIRYGPNQGFLQKRTPFGMLENVTVGMNFTQ
NEIDQDMIMYIHNGQEGVRDLIKFDVTDGINPLIDRYFYVTVGGIDMVFPDVISKGVSLK
EGGRVTLTTDLLSTSDHNSPDEHLVFTITRAPIRGHLECTDAPGMPISSFTQLQLAGNKI
YYIHTADDEVKMDSFEFEVTDGYNPVFRTFRVSITDVDNKKPVVTIHGLVVNEGENKLIT
PFELTVEDRDTVDHLLKFTITQVPVHGKLLFNNSRPVTSFTKQDLNENMIRYKHDGTESA
SDSFSFTVTDGTHTDFYVFPDTVYATRKPQVMKITIYPVDNGVPQVVTNKGGTTLRILPT
GHLGFLITSKTLKAEDRDSPHGAVIFKITVAAEHGYLIDLGKGNATITTFTQADIDEMHI
CYVLRDGDNATSDTFHFSIEDSGGNKLKKQHFRLNWAWISLEKEYYQVDEETKFLEVVLR
RRGYLGETSFVSIGTKDGTAEKDKDFRGKAQKQVQFNPGQTTATWKVRILSDGLYEQSET
FQIVLSEPVMGALEFPEAATVEIVDPGDESTVFIPLATYSIEEDVGELLIPVRRSGDVSQ
ELMVVCFTQQGTAKGTVPTTVLSYSDYISRPEEHHSVLRFDKGETEKHCRVVVIDDSLYE
PEESFNVTLSMPMGGRLGQEFPTSRVTILPDADDAPVFYFGETEYHVDESDGYVEVRVWR
TGSDLSKTGTVTVRSRKTEPVSAEAGMDYVGISKNLDFSPGVNMQTFKVTILDDLGQPVL
EGPEKFELVLRMPMNGILGEPGKATIYINDSISDLPKVQFRDPAYTGNENDKQISAIVYR
SGDLSYKSSVRCYSRQGSAQVMMDFNERPNTDASTIVFLPGEVEKPCVLILVDDTEHEED
EELRLVLGSPKSESPFGASIGAQNETLIKIKDDADKAIIRFGATKFSVSEPSESGQISVV
KIPVQRTGDTSKVSVVRVHTKDGSASSGEDYHPISEDVEFKEGETEHIVEVEILYDGVRE
MREAFTVHLKPDENMVAEIQVTKAIIYIEETNSMADVTFPAVPVVMSLLQYDDTSSTRDT
QPVAGYPVVCVTSCNPKYPDFDRTGSICVAEHINNTLTRYRWLVSAPTGPDGVTSPMKEL
DFDTFFTSSKTITLDSVYFQAGSRVQCAARAVNSNGDEGLELTSPIVSISQEDGMCQPRV
IGTVGAEPFSARLRYTGAEDPDHPNLIKLTVTMPHIDGMLPVVSTRPLSNFELTLSPDGT
RVGNHRCSNLLDYTEVRTRYGFITDATRNPDAIGGTAPYQYSTALRGQNTLRFYRNLHLE
ACLWEFVSYYDMSELLNDCGGTIGTDGQVLNLVQSYVTLRVPLHVSYVFHSPVGAGGWQH
FDLQSELRLTFVYDTAILWRDGIGSPPEAELQGALYPTSMRINEQGRLVVNFRTEARFRG
LFVTAHSASPMTSMVMCADHPGLTFNLSLVRSEPTYNQPMQQWTFISDFAVRDYSGTYTV
KLVPCTAPPGVEYSFRPVCHPREPITFDLDIRFQQVSDPVSAEFSLNTQMLLLSKKTLWL
SDGSMGFGQESDTAFSEGDVIYGRVMVDPVQNLGDSFICNIEKVFLCTGADGYIPKYNPD
NFEYGCLADSPSLLYRFKIIDKAQPETQARTFGSISFNAFLAVDDPQALPLVRQPGSDGF
RLDSTALFQVSAGREWYIHTIYTVRSRDNANRGIGKRSLEYHSLTHSHSISKRSATRVPD
LAQDIGADNNRGTNILHIALDRSAQKHPNLLEESQAEGIVPRELNQRDSSDDQLVMIIGI
LVGLLLTILLAILVILVVRSRRDKNVAEPPKGSSSTEPMMTQGLDSSNSSEV
NT seq
9339 nt
NT seq
+upstream
nt +downstream
nt
atggctcggagtataacagagcagcgacaacgtagagcgtctcatgtacacttgtttctc
tttatagtgactttgttgtgcgatgcatctgcacagggatttgagagtttgggattgacg
tacggtttaagatctgaactttcagaggatgctattcttgttgccaataatggaatacgg
gttcctttcggcagatctgtctatattgatccaatcaatgatctggttatccaagttcaa
cccggagacaagtgcaccgtcacagttctggataacgacccgctgtcacagagaccggga
cagctgtccccgaaaaagtttccttgtgaatttggtcctaatgatgtgaaatactcgcat
ttcggatccaggagcccctcaaaagacagagtaagacttcagctcagatatgatactcag
actgatactgtcattattccctttatgatggaagttgaggtgattttcactcagcttgag
attctcaccaaacacatgcctgtagttgtagagaaactgcttggtattagtaaccctatt
gataagaaaatcctggagttcacttatgatagaaatgctcatttgtgtaaagttacatct
ttagccagtggcagttcattacccagatacggaaagctgattgataatggaaaactaggg
aaacctgtggactgtgatgaatttgtcagaatggacattcgctatcagcacacttttgca
catcgctctccgaaccgagattatatccccatgtatttagagttacaagacaaagaagcg
aatgtactgaagcaggagtttttccaaattgtggtgcttataaaagagggtgaggaaaac
acagctccgaaaccgagtttcgtagcaatgatgatgatggaagttgaccagttcgtaatg
actgctataacccacgatatgcttgccgctgaggatgtggaatccaaccctgatgattta
atcttcaacatcacttccccgctgtccttcgaggagggctacattgtgagcacggatgat
aggaatttgcccatcacgtctttttatcaagcagacctgaaagatcttaaaatagcctac
aagcctccctctgtggattcggatgtggagagaattttccaaattgagtttgaagttgta
gacactgagggggctatatcggatccatttgcgtttatgatagtggtgaagcctatgaac
actctagcaccggttgtgacccgcaacaccggtcaactgctttatgagggtcaatcacgg
ccattgtcaagctcacaaaacctacagattagtgacgaggacaacttggacaatgtccaa
attacagttatcaacgggcttcggcatggagagctcacagttctgggatccaggcgaaaa
ttcttcaccccggcagatcttgatgtaggtagtgtcatctaccagcatgacggcagcgat
acatacagcgataatatcattttcagaatgacagatgggaaaaatgaagttgagtttttg
tttcccattacagtggtgccaactgatgatgaacctcccataatcaatgccaacacaggc
ttaattttgttcaaaaaccaaatgatgcccatttctcctttaatgcttagtgcagccgac
atagattctgaggattcaactattaagttcatcattgtgcctccttactctactatcgga
gaagtgatacttcgtcagtcagatgcacctgaggatccatcaacgtggaagttcaattct
gaggatgagatgtatgagaaagtagtgacagaatggttccagcacgacatcacagaaggc
aaactgttttataggcatgtcggaccacataatacaaagaccgtcatggaccagtttgtt
ttccgtgtgcaagatgacaacgacccaccgaatcattcaggtgagaactctttcatcatc
aaagttctccccattgatgatatccccccagagctgtatcccgggaccactctgcaagtg
accgttcatgagtaccagctcacctattttagaaagaagttcttgcggtatacagattta
gactcagaagatagagatttgaaatacacaattacccaaccacccactgacacagatgag
aacagccctggcatactaggaagcatcgttttaaccgagagtccaaattcagaagtcacc
gagttcactcaggcacagataaatcatcacaagatagcctacaaacctcctgatctagag
cttggaataactccgcatgtagtgcagttccattacaaagttgaggacacggcgggaaac
gtcgccaatggcgttttcaccatatttttacagcctgtcgacaacaagcctccccagatc
accaacacaggctttaccattcaagaacgaggggcgcacgtcatcacacgtgctgagctg
gacaccacagatgccgacacggacagctcacagattctgtttacaatcacccagcctcca
aagcacggtcaggttaagtacacattcactgatatgactaaagggaattcgttcaatttg
gatgatatatctaatggcaggatatcttacattcataatggtgatgagtcaacaagcgat
ttcttccagctggatgtcagtgatggtgtccacgttgtcacaatcaccgttaggatcaat
gtgaagcctgttgacgacgaagcaccaactattagccttccagagggcactattggttct
tacattgatgttttggagaacggagcaactgagatcaccaccaacgtcattcagggacga
gatgaagacactgatgacctcaggctgacctttattgtagaagatcccccagtgtttggt
gaaatattagtcaatggtgtgccctccaataggttcacacaagcagacatcattagtggc
ttggtcatatacgcacataatagtggagaaattggcttgacgacaaaacacgactttttt
aatcttacgcttaccgatatgtctgatgaatggacagttgggggaaatacaatcaaagga
gttcgcgtacaggtcactattttgccgttggatagccaggcacctgaggtctttgtgggc
ccccaattcacagtcgttgagggtgagaaaaacattattgatatttcgcatattagtgct
aatgacattgacactcctaatgatgatctactttgcacaattattgtgcagcccacttca
ggctatgtagaaaacatctcccccgcaccaggctctgaaaaatccagatcggggattgcc
attagcgcgtttaccattaaagacattcgggaaaaccacatttactacgtgcaaagtatt
cataaaggtgtcgagccagttgaggacaggtttactttcagatgttcagatgggataaac
ttttccgagagacacttttttccaatcgtaataatcccatctaatgacgaaaagccagag
atccatatgagggaatttgttgtgatggaaggcatgaacattgtgattgacactccaata
ttaaacggtgccgatgctgatgttccagcaggtgagctcacgtttattatttcaaaacct
ccaaaacatggatacatcctcaatcagttaacctcaggcactgttcccgtcacaaacttc
actcttgatcagatacgagaggcttcaagtattgtctacgagcatgatgattcagaaacc
acggaggatagttttgaagttctacttactgatggcaaattcacagtggagaaaaccgtc
atgattatggtcattctggttgacgatgaaacgccaaggatggcgattaatgatggtctt
gaaatagaagtgggagaggtgaaaataatcagcaataaagttttaaaagcaaccgatctt
gatacagaagacagtgttttgacctacatcatacgttatggaccaaatcaagggttttta
caaaagcgaacaccatttggaatgctagaaaacgtaactgttggaatgaacttcacacaa
aacgagatcgaccaagatatgatcatgtacattcacaatggacaagagggagttcgtgac
cttatcaaatttgatgtcactgatggtattaaccctttgattgacagatacttctatgta
actgtgggtggaatagacatggtgttccctgatgtgatcagcaaaggtgtttctctgaaa
gaaggaggaagggtgactctaaccacagacctgctcagcactagtgatcataacagtcct
gatgaacacttagtgttcaccatcacacgtgctcctatacgaggacacctagagtgcact
gatgcaccaggaatgcccattagttccttcactcagcttcaactagctggaaataaaatc
tactacatccacactgctgatgatgaggtgaagatggacagctttgagtttgaggtgacc
gacggttacaatcctgtattccgcaccttccgtgtgtccatcacagatgtggacaacaaa
aagcctgtggtcaccattcacggactggtcgttaacgaaggcgaaaataagttaatcact
ccttttgagctaacggtggaggaccgtgatacagtcgatcaccttttgaagtttacaatc
acccaggtgcctgtgcacggcaagttgctgtttaacaactcacgacctgtcacgtctttc
accaagcaggacctgaatgaaaacatgatacgttataagcacgatggaacagagtctgcc
tccgacagcttttcgtttaccgttaccgatggaactcacacagacttttatgtgtttcct
gacacggtttatgcgactcgcaagccccaggtgatgaaaatcacaatttatccagtggac
aatggagttccgcaggttgtgactaataagggtggtacaacgttaaggattctccctact
ggtcaccttgggttcctgatcacgagtaaaacattaaaggcagaggacagagacagccct
cacggagcagtgatttttaaaattactgtggctgctgaacatggctacctcattgacttg
ggaaaaggcaatgctactatcaccacattcacccaagctgacatcgatgagatgcacata
tgctacgtgcttcgagacggagacaatgccacaagcgacacattccacttttccattgaa
gacagtgggggcaacaagctaaaaaaacaacatttccgactaaactgggcctggatctcc
ctagagaaagagtactaccaagtggatgaggagaccaagtttctggaggtggtcttgaga
cgcagaggttaccttggcgagacttcatttgttagtatcggtaccaaagatggtacggct
gaaaaggacaaagatttccgagggaaggcccagaaacaagtccagttcaacccaggccag
accactgctacctggaaagtgcgtatcttgtcggacggcctatacgaacagtccgagacc
ttccagatcgtcctgtcagagcctgtcatgggagcactggagttcccagaagcagcaacg
gtggaaattgttgaccccggagatgaatccacagtgttcatccccttggctacatactcg
attgaggaggatgttggagagcttctgattcctgtgagaagatctggagatgtcagtcaa
gagctcatggttgtctgcttcacccaacaaggtacagccaagggcacggttcccaccacg
gtgctttcctattctgactacatttctcgacccgaggaacaccacagcgtgctgcgtttc
gataagggcgagacggagaagcactgccgtgtggtcgtcatcgacgactctctctatgag
ccggaggaaagctttaatgtcaccctcagcatgcctatgggcggccgtctgggtcaggag
ttccccaccagcagggtcaccatcctgcctgatgcagatgatgcgccagtgttttacttc
ggagaaactgagtaccatgtggatgagagtgatggctatgttgaagtccgggtttggaga
actggaagtgatctttccaaaaccggaacagtcacagtacggtctcgaaaaactgagcct
gtttcagccgaagctggcatggactacgttgggattagtaagaacctagacttttccccg
ggtgtcaacatgcagacattcaaggttacaatcctggatgacctgggacagccggtgctg
gaggggccggagaagtttgagctggttctccgcatgcccatgaacggcatattgggagaa
ccgggaaaggctacgatctacatcaacgactccatctcagatttgcccaaggtgcaattc
cgagatcctgcgtacacgggtaatgagaatgataaacagatatctgcaattgtttaccgg
agtggagatttgagctacaagtccagcgtgcggtgctacagccgtcaaggttcggcccaa
gtcatgatggacttcaacgagaggccaaacacagatgcctccaccatcgtctttttacca
ggagaggtggagaagccttgtgtcctcatccttgtggatgacaccgaacacgaggaagac
gaggagctgagattggtgctgggaagccccaagagcgaatctccatttggagcctccata
ggggctcagaatgagacactcatcaagataaaggatgacgctgacaaggccattatcagg
tttggagcaaccaaattcagtgtcagtgaacccagtgagtcagggcaaatctcagtggtg
aagatcccggtccagaggacaggagacacatccaaagtgtctgtggttcgggtccacaca
aaggatggctcggcttcctctggagaagattatcatcccatctctgaagatgtggagttt
aaagaaggagagactgagcacattgtggaggtggaaattctttatgatggtgtgcgagag
atgagagaggccttcactgtccaccttaaacctgatgagaacatggtagcggagattcag
gtgaccaaagccatcatctatattgaagagacgaacagtatggctgatgtgaccttcccc
gctgtgccagtagtgatgtctctgttgcagtacgacgatacaagcagcactagagatact
cagccagtcgcaggatatcctgtagtctgtgtcacatcatgcaaccccaagtatcctgac
tttgaccggacgggctccatctgtgttgctgagcacatcaataacaccctgacacggtac
cgctggcttgtcagtgccccgacaggacctgacggcgtgaccagccccatgaaggaactg
gattttgacaccttcttcacctcctccaaaacgatcacattagactcagtgtatttccag
gcaggctcacgtgtgcagtgtgcagcccgggctgtcaactctaatggagatgaaggcctg
gagctcaccagccccatagtctccatcagccaggaagacggtatgtgccagcctcgggtt
attggcacagttggagctgagcctttctctgccaggctgcgctacactggagcagaagat
ccagaccacccaaacctcattaaactgactgttaccatgccccatattgacggaatgtta
cctgtagtctccactcgtccgctctcaaactttgagctgaccctgagtccagacggtacg
cgtgtaggaaaccatcgctgctctaacctgctggactacacagaggtgcggacccgctac
ggcttcatcacagacgccacccgcaatccagatgccatcggcgggactgcgccttaccag
tacagcacggccctcaggggccaaaacaccctgcgattctaccgaaacctgcacctggag
gcatgcttgtgggagtttgtcagctactatgacatgtctgaactgctcaatgattgcgga
ggaaccatcgggactgatggacaggtgctgaacctggtgcagtcttacgtgaccctgcgt
gtgcccctgcacgtgtcctacgtgtttcattcacctgtcggcgctggtggttggcagcat
tttgacctgcaatctgagctgcgtctcacttttgtttacgatactgccatcttgtggaga
gatggcattgggagtccaccggaggctgaattacaaggtgctctctatcctacaagcatg
cgcatcaacgaacaaggtcgtttggttgtcaatttccgtacagaagcacggtttcgggga
ctctttgtcactgcacattcagcctcccctatgacttccatggtcatgtgtgcggaccat
cccgggctgacctttaaccttagcttggtgagaagtgagccgacatacaaccagccaatg
cagcagtggaccttcatctcagactttgctgtgagggattattcaggaacatacacagtg
aaactggttccctgcacggctcctcccggtgttgagtacagcttccgtcctgtgtgccac
cccagagagccaattacctttgatctggacatacgcttccaacaggtgagtgatccagtg
tcagcagagttcagtcttaacacacagatgctcctgctttcaaagaaaactctctggtta
tcagacggctccatgggctttggtcaggagagtgacacggctttctcagagggagacgtc
atctacggccgcgtaatggtggatcccgttcagaatcttggagactcgtttatctgtaac
attgagaaggtgttcctgtgcacaggggcggatggatacattccaaaatacaaccctgac
aactttgagtacggctgcctagctgattcgccgtctcttttgtaccgattcaagatcatt
gacaaagctcagccagaaactcaggcgagaacattcggcagcattagcttcaatgctttc
ctcgctgtagatgatcctcaggcgctgccgctggtgaggcagccgggctctgatggcttt
agattggattcaacagctttgtttcaggtgtcggcaggcagggagtggtacattcacacc
atctacaccgtccggtccagagacaacgctaaccgaggcatcggcaaaaggagccttgaa
tatcattctctgacacacagccactcgatttctaaaaggtcagccacccgtgttccagat
ttggctcaggatatcggtgcagacaataaccgcggcacaaacatcttacacatagcgctg
gaccgcagcgctcaaaaacatcccaaccttctcgaggaatcccaagcggagggtatcgtt
cctagagagctgaatcaaagggactctagcgatgatcagcttgtcatgatcataggaatc
ttggttggtcttctcctcaccatcctccttgccattctcgtcattctggtggtgcgatct
agacgggacaagaacgtcgctgagcccccgaaaggctcaagcagcacagagcccatgatg
acacaaggcctcgatagcagcaacagttcagaggtttga
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integrated database retrieval system
