Labeo rohita (rohu): 127177849
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Entry
127177849 CDS
T09007
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lroh03000
]
127177849 (prdm1a)
Transcription factors [BR:
lroh03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
127177849 (prdm1a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
zf-C2H2_4
SET
C2CH-3rd_BIRD-IDD
zf-C2H2_jaz
Zf-C2H2_ZNF451_C
zf-C2H2_6
zf-met
DUF6761
zf-C2HE
zf-C2H2_15
STL11_N
Zf-C2H2_ZNF451
Motif
Other DBs
NCBI-GeneID:
127177849
NCBI-ProteinID:
XP_050986316
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Position
16:complement(33473111..33482893)
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AA seq
777 aa
AA seq
DB search
MCGWDQSVLAASHHSSAMLTTEGAPYTVDDEELKMDVEDVDMTKWTEEEFEEKCTYIVKD
HTWEGPLENTELTRAEASLPRNLAFKHPPDSKEVVGVVSREYIPKGTRFGPLVGESYTAE
NVPKDANRKYFWRIYSNGEFHHFVDGLDEEKSNWMRYVNPAHSQQEQNLAACQNGMNIYF
YTVKAIPADQELLVWYCPEFARRLNYPASGEIMMQKLKQSLIEAKQQATEVKHPVKREHS
VSEILKDVLQEPSRPLPTRPRCPNSPDRPLYPSAVYPLRPSLNEDFLKTTTVFGLPNRSH
RQCSVTPSPSAHSSPGSSPESSPTPASLEPRDSLLSFSPALYSRGLNHYQGYSPAGSMPF
YPNPHYSRYLMPHYPVSSLSGPPTLGGIFPHMYPFYSSLVPPHVPFPPGMLPSEGSRQFL
LPPDSPAPRDILLPAATSAFSAATSLKDKPAHGHGHPYAPAGGSPTAGSAASTGRVPTKP
TSAILSTCRSEDEAINLSKMKRGSTGYKSLDYPLKKQNGKIKYECNVCTKTFGQLSNLKV
HLRVHSGERPFKCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRL
HSGEKPYQCKICPAKFTQFVHLKLHKRLHTRERPHQCPHCHRNYIHLSSLRLHLKGYCLA
VSPSPSCSLDELNRVNEEIERFDISDNADRLEEMEGFDVESMVEKQIFGLLWQEMDFKAS
YHKGSTGGDLHPPPPALSTYRLNEHGSEASVIKVHCSSPIQLLPIKVKKETEEAMEP
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggctgggaccagagcgtcctggctgcttctcatcacagctcggccatgttgact
actgagggagcaccctacaccgtggacgatgaggagctcaagatggatgtagaggatgta
gacatgacaaaatggacggaggaagagtttgaggagaaatgcacatacatcgtgaaggac
cacacctgggaaggtcctctggagaacacagaactcacccgggccgaggcatccttaccc
agaaacctggccttcaaacacccaccagactctaaagaggttgttggtgtagtaagcaga
gaatacatccccaaaggcacacggtttggcccccttgtgggagaaagttacactgcagaa
aatgtccccaaagatgcgaacaggaagtacttctggcggatatactctaatggagagttc
catcattttgtggacggactggacgaggagaagagtaactggatgcgttatgtgaatcca
gctcattcccagcaggaacagaaccttgctgcctgccaaaacggcatgaacatctatttc
tacaccgtgaaggccattcctgcagaccaggagctactggtgtggtactgccccgagttc
gcccgtcgtctcaactaccctgcctctggagagatcatgatgcaaaaactcaagcagagc
ctgattgaagccaagcagcaagcgactgaagtcaagcacccagtcaaaagagagcacagc
gtttcagagattttgaaagatgtactgcaagaacccagcagaccacttcccacccgtccc
cgctgccctaacagcccagaccgacctctttaccccagtgctgtctatccgctccgcccc
tccctaaatgaagactttttaaagactaccacagtatttggcctcccgaaccgttctcac
agacagtgttcagtgacgcccagcccttcagcacacagcagtcctggaagcagtccagaa
agcagtcccacaccagcatcccttgagccaagagacagccttctctccttctctccagca
ctctacagtcgtggcctgaaccactaccaaggctactcaccagcaggctccatgccattc
tacccgaacccgcactactcacgctacctcatgcctcactaccctgttagtagtttaagt
gggccacctactttgggtggtatatttccacacatgtaccccttttatagtagcttggta
ccccctcatgtacccttcccacctggcatgcttccgtcagagggtagtcggcaatttctg
cttccacccgactctccagctcccagggacatcctgcttccagcggccaccagtgccttt
tctgcagccacgtctctgaaagacaaaccagcccatgggcatgggcacccctacgctcct
gctggtgggtctccaacagccggctctgcagcctcaacgggccgtgttcctaccaagcct
acctcagcaattctgagtacctgccgctcagaggatgaggcgatcaatctcagcaagatg
aaacgaggttccacaggctacaaaagtctagattacccacttaagaagcagaatgggaag
atcaagtatgagtgcaatgtctgcaccaagacttttggtcaactttccaacctcaaggtg
cacctgcgtgtccatagtggtgaacgaccctttaagtgtcagacctgcaataaaggtttc
actcagctggcccacctgcagaaacactatttggtccacacaggagagaaaccccacgag
tgccaggtgtgtcacaagcgtttcagcagcactagcaacttgaaaacccatttgcgactg
cactctggtgaaaagccctaccagtgcaagatctgcccggccaagtttacacagtttgtc
cacctcaaactgcacaaacggctgcacacacgagaacgtccacaccaatgcccgcactgc
caccgcaactacattcacctcagcagcctgcggcttcacctcaaaggctactgcttagca
gtctctccttctcccagctgcagcctggatgaactcaaccgggtcaatgaggaaattgaa
cgctttgacatcagcgataacgcagacagactggaagaaatggagggatttgatgtggag
agcatggtagagaaacagatctttggcctgctctggcaggagatggattttaaggcgtct
tatcacaaaggtagcactggaggagacctgcaccccccaccacctgcattatctacatat
cgtctgaacgagcatggcagtgaggcctctgtcatcaaggttcattgcagcagccccatc
cagctcctaccgatcaaggttaaaaaggagacagaggaggccatggaaccttag
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