Labeo rohita (rohu): 127177929
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Entry
127177929 CDS
T09007
Symbol
col6a4a
Name
(RefSeq) collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127177929 (col6a4a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127177929 (col6a4a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127177929 (col6a4a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127177929 (col6a4a)
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127177929 (col6a4a)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127177929 (col6a4a)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127177929 (col6a4a)
Hyaluronan
Extracellular matrix or blood plasma proteins
127177929 (col6a4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
VWA_CoxE
DUF1194
DJ-1_PfpI
Herpes_ORF11
DUF6913
Motif
Other DBs
NCBI-GeneID:
127177929
NCBI-ProteinID:
XP_050986438
LinkDB
All DBs
Position
16:complement(11600721..11647677)
Genome browser
AA seq
2562 aa
AA seq
DB search
MGAARPFLSALIIISCFLVSTAQQTGCLAERPPYDIVFLVDSSSSIGTRDFREVKTFMRT
FVDGLDIDTKKVQVGLAQFSTDPHKEFLIGDYTNKADLFKKIENLPYRTGGTYMGKAMNF
LKDNYFTTAGGSRIDEKVPQVVVVVTDGDSADDIKGPARELRQKGIIIFAIGVGPTNMTE
LKAIANSPPERFVVNIDNYQALQGLTTTMKETVCILMRDQGKAIAPKFVDVFILVDSSAH
GGTQQIRELLNQLAVQLNVGDGSHKIALAQFGENVVEEFLFKDYKITAEATEFIDRFEPR
PDGERKLGKAMDYVRTNFLNTASGSRIAKGYKQYLLVLRAGNSYDSTLRAMRTMKNEDVT
VIDIRLEENLRYLLPTIRSFQFQENIIDDVVVDITKRIQEKEIFNVTGDCKSAQVADIVF
IVDESGSITRTNFDLMKRFLHRTVSGLEVKSDSVRVGMVLYNERPSAEFYLDTFVNKSDI
LNYIKIIPYRGGGTSTGEAIKFAKNYLFTKTRGSRKDLGVKQIAVVITDGESQDDVTAPA
AELRRSGVTVYALGVKNASVEELKQIGSYPDREFVFSVDSFQMLTSLEKSLRKSLCKVVV
DRGFDKNNRFILKQGCVNTEEADIYFLLDHSASTRTDFEDVKKFILGFLQLFHVGPNRVR
VGVVKVNRVPTLQFSLTEHKNRVSLEAAVNKIIQPSEGTETGKALTYVADLFNQARASRP
AKVQEILIVITDKESQDEVREPAEELRIQGVSVYAIGVKNANKKEILNMTSDATKQFYVS
NYDGLNALKSEIITDICSQEACKSKVADIMFLIDGSSSIYTLDFKSMLTFITKVVNGTII
GKDSVHIGVVQFSDDPREQFPLNRYYSKGEVEKEINGITQLTGNTYTGKALSFISKYFDK
SMGGRPDVPQFLVVITDGEAHDAVAAPAKAIRDKGVTIFSIGVGSVNTTQLWEISGTRDK
VYVERDFDALQSIDRNLQFKLCSADTGCPSTQLADVIFLVQCTRRVRLQEFENIKNFLIS
VVNSTQIGDNLIRIGVIVYSGTPNQFTLNQYNNKRQVIEAISTLKSPTGNLNTAKALGYS
LNYFSEENGGRHKRGIPQMLFIITDGDARDRDNFHARADDFMAKHINVYGIGVSTVRESD
LEIITQNKNQIFHVDNYAGLQALQKNVSSVLCNAAKPECQKEVADVVFLVDGSESIKEES
WRIMIAFLLNVVDQLRISPELFRIGIAQFSTSYQKEFYLNEYNDAAGVKAAIERITQVKE
GTNIGKALSSVTEFFQESKGSRRQSGVPQNLVLITDGASSDRVNEAADELQRQQIPVYVI
GIGDVSLPQLNYIARSRDRLFEVQNFNYLNLTISTFVYALCTPQQLVDPSCSIDIGIGFD
NSRTSSSFRSIFRDQRKLQSYLPEIIRYISVVHDLCCIRSPTLTTNVGFRLVEENGRMLD
DFSFEEYNEGVVKKVMALQTSQSLKFNTQLLRSFEQKFKASNSHVKVLIIFTDGLDEPVE
DLQLAINSLRTSGVKALMTVALEGFKNTADLQRLEFGRGMRYSQLLSIGMQNVGSVMQKE
IDTVASRECCNVMCKCTGHEGARGHYGSPGIKGTSGVKGYSGFPGEEGGPGERGLPGLNG
TRGHQGCIGRRGIKGGRGYRGNDGDDGDDGLNGVNGEQGVTGAAGSPGERGDSGSPGPRG
ISGSPGNPGQRGLRGDPGNSGIDNNSRGPKGDAGGPGIQGEPGPDGLPGQNGENGRPGSN
GRRGSAGQLGPRGPPGTPGLPGLPGPTGPLGPVGPPGPVGQKGYIGLPGPQGSPGSPGRP
GSKGSSGSRGQKGQPGDPGDKGALGSLGPRGLPGKDGADGYGFPGTKGQKGDSGFPGYPG
LQGEWGVKGTNGGGGPKGNRGRGGNSGRAGPPGDPGSEGMPGHRGSKGPRGTRQMSDCQL
ISYVRENCVCCRDNIKCPAYPTDLVIGLDMSEDVTPQGFERMRSVVLRLLDKINIVESSC
PTGARVAVVSYSSYTKYLIRFTDYHRKTQLIEAVNNIGLERTANRRNIGAAMRFVGRNVL
KRVRKGVLMRKVAIFLTAGESQDSMSLTTAILEYKALNIKLGVISLRNVPNIRRAFEADE
TRSFILTVLGRLQEQNATLSKIQSCVICFDPCRPARECEGTNLESAPQELDVDLAVIVDG
SRSILSDEYEGVKEVLGSVLDQIVVSSQPNGADRHARVAVYQQSSTYSEAQSSVKVIFDF
QQFSDRSLMKRSIYQDLKQTGGSSRLAFAMDYAITQGILAAPRGRKNKMVLVIIGEETAS
QDRAKLDFISKVAKCEGVVLFTLTVGNHISTAQVEELASYPLEQHIIHLGHLKNGEHEYT
QRFMRTFFHILSKNVNTYPHSSFQSQCRNFQTDPGQRLDYEAAERPIYSVPVPSAAYPDI
LVEEEIEEEDPTEEETWNQQNSGVKSLTDYTDNPCHLNSDLGTICGEYVQRWYYNEAVGV
CLPFWYGGCDGNSNRFNSEKECLQTCRKQNPEIILQTKGETVLVDDACLMKQDVGPCSNY
VLRWHYDIQQNECIHFWFGGCEGNKNRFDTEEECKALCVKYI
NT seq
7689 nt
NT seq
+upstream
nt +downstream
nt
atgggggcggcacggccatttctttctgctttaatcatcatatcatgtttccttgtaagc
actgcacaacaaacaggatgtctggctgaaaggccgccgtatgacattgtattccttgtg
gatagttctagcagcatcggtactcgagacttccgggaggttaagacgttcatgcgcact
tttgtggatggtttggatattgacacgaaaaaggtacaagttggtcttgcacagttcagc
accgatccccacaaagagtttctgataggggactatacaaacaaagcagatctgtttaag
aaaatcgaaaaccttccataccgaacaggaggcacgtacatgggaaaagccatgaatttc
cttaaggacaactatttcacgactgcgggtggaagccgtatcgatgaaaaagtgcctcag
gttgttgtggtggtcacagatggagactcagccgatgatataaagggacctgccagagag
ctgcgacaaaagggtattatcatctttgccattggtgtcggtccaaccaatatgacagag
ttaaaggccatcgccaacagcccacctgaacgttttgtggttaatattgacaattaccaa
gcgctgcaaggactgacgaccaccatgaaggagacagtgtgtatcttgatgagggatcag
gggaaagccattgccccaaagtttgttgatgtatttatactggtggatagttcagcccat
gggggaacacaacaaataagggaacttctcaaccaactggctgtgcaactcaatgtgggc
gatggatctcataagattgccctggctcaatttggcgagaacgttgtcgaagagttcctt
ttcaaagactacaaaataacagcagaagccacagaattcatagatcggttcgagcccagg
cccgatggagagcgaaaattaggaaaggccatggattatgttcgtacaaactttctcaac
acggcatctggcagcagaattgctaagggctacaagcagtatctgctggtgctgagagca
gggaactcttacgactccactctgagggccatgcgaacaatgaagaatgaggatgtgacc
gttattgatatcagattggaagaaaatttacgctacctgcttcctacgatacgcagtttc
caatttcaagagaatatcattgatgatgttgttgtagacatcacaaaaagaattcaggaa
aaagaaattttcaatgttacaggagattgcaaatcagcccaagtggcggatattgttttt
atcgtggacgaatcgggtagtatcaccagaaccaactttgatctcatgaaacgtttcctc
caccgcacagttagtggcctcgaggtgaaatctgacagtgtgagggtgggaatggttctt
tacaatgaaagacccagtgctgaattctacctggacactttcgttaataagagtgatatt
ctgaactacattaaaatcataccatacagaggcggaggaacctcaactggagaggccatc
aagtttgccaagaactatctcttcaccaagacaaggggcagcaggaaagatctcggtgtt
aagcagattgctgttgtcatcactgatggagagtcacaagatgatgtcaccgccccagct
gctgagctgaggcgctcaggagtcaccgtatatgcccttggggtgaagaatgccagcgtg
gaagagctcaaacaaataggatcttaccctgacagggagtttgtgttcagtgtggacagt
tttcagatgcttacatcactggagaaaagcctcagaaaaagtctttgtaaggttgtggtc
gatagaggttttgacaagaataatagattcatcctaaaacaaggatgtgtgaacacagag
gaagccgatatttatttcctgttggaccactctgccagcactcgcaccgacttcgaagac
gtgaagaaatttatcctaggcttcctgcaattattccacgttggacccaatcgagttcgt
gtgggagttgtgaaagtcaaccgtgttccgactctacagttcagcctgacggagcacaaa
aacagagtctctttagaagcagctgtgaacaaaatcattcagcccagtgaaggcacagag
acaggcaaagcactaacttatgtggccgatctctttaatcaggccagagcatcccgtcca
gctaaggtgcaggagattctcattgtcattactgataaggaatcccaagatgaggtgaga
gaaccagcggaagagctgaggattcaaggtgtttcagtctatgccattggagtaaagaat
gccaacaaaaaagagatcttaaacatgacgtctgacgcaaccaagcagttctatgtgagc
aactatgatggtctgaatgcccttaagagtgaaattatcacagatatttgctcacaggag
gcctgcaagagcaaagtggcagatatcatgtttttgattgacggctcttctagcatttat
accctagactttaaatcaatgttgacgtttattactaaagttgtaaatggtaccatcatt
ggaaaagatagtgtgcatattggggtggtccagttcagcgatgatccaagggagcagttt
ccactgaataggtactacagcaaaggtgaagtagagaaagagatcaacggcattacgcag
ctaacaggaaatacatacactgggaaagcgctctcattcatttcaaagtactttgacaaa
tccatgggcggtcggcctgatgttccacagttcctcgtagttatcacagatggggaagct
catgatgctgtcgctgcacccgccaaggccatcagagacaagggtgtgaccatcttctca
ataggcgtgggcagtgtaaacaccacacagctgtgggagatcagtggaactcgagataaa
gtgtatgtggagagggattttgatgcacttcagtccattgacagaaacctccaattcaaa
ctctgcagcgctgatacaggttgtccgagcacgcagctggctgatgtgatcttcctggtg
cagtgcaccagacgagttcgtctacaagaatttgaaaacattaagaactttttaatttcc
gtggtgaacagcacacagattggggacaatctgattcgcattggcgttattgtctactca
ggcactccgaatcaattcactttaaaccagtacaacaataaacgtcaggtgattgaagcc
ataagtaccttgaagtccccaactggaaacctcaacacagctaaggctcttggctactcg
ctcaattacttcagtgaagagaatggtgggcgccataaacggggcatccctcaaatgcta
ttcataattacggatggtgatgctagagaccgagataacttccatgcacgggctgatgat
tttatggccaaacatataaacgtgtatggaattggagtgtctacagttcgagaaagcgac
ctggagatcattacccagaacaaaaaccaaatcttccacgttgataattacgccggtctt
caagcactgcagaagaatgtctctagtgtgctttgcaatgcagccaaaccagaatgccag
aaagaggtagccgacgtggtgtttctggttgatggatctgaaagcatcaaggaggaatca
tggagaatcatgattgctttcttgctaaatgttgtggaccagctccgaatttctccagaa
cttttcagaattggtatagcccagttcagcacctcatatcagaaggagttctacttaaat
gagtataatgatgcggcgggggtgaaagcagcaattgaacgaatcactcaagttaaagaa
gggacaaacattggaaaagctctgagcagcgtcacagaattcttccaggagagcaaagga
agtcgcagacagagcggcgtaccacaaaatcttgtacttatcactgacggcgcttcatca
gaccgtgtgaacgaagcagctgatgaactccaacgccagcaaattccagtctatgtgatt
ggaatcggagatgtctcgttgccacagctcaactatattgccaggtcacgagataggtta
ttcgaagtgcaaaacttcaactaccttaatctgacaatttcaacatttgtttatgccctt
tgtactcctcagcaattagtagatccaagttgttctattgacattggcatcggatttgat
aactcacgcaccagttcaagttttcggtcaatctttagagaccagagaaagctgcagtcc
tacctacctgagatcatccgctacatttcagttgtgcacgacctatgctgtatacgcagc
ccaaccctcactaccaatgtaggcttccgattggttgaagaaaatggaaggatgctggat
gatttctccttcgaagagtacaatgaaggtgtggtaaaaaaagtgatggcacttcagacg
tcacaatctctgaaattcaacacccagcttctacgttcttttgagcagaagttcaaagct
tcaaattctcatgtaaaggtgctgatcatctttacagacgggttggatgagcctgttgag
gaccttcagcttgccattaacagcctcaggacaagtggtgtaaaagcgctgatgactgtg
gcgctagaaggatttaaaaacactgctgacctgcagaggctggagttcggtcgagggatg
cgctacagccagcttctctctatcggcatgcagaatgtgggcagtgtcatgcagaaggag
attgatacagttgcttcgagggagtgctgtaatgtaatgtgtaaatgcactggtcatgag
ggagcacgtggacattatggttctccagggattaaggggacttctggagtgaagggatat
tctggattccctggagaagaaggaggacctggtgagagagggcttcctggtttgaatgga
actcgaggacatcagggatgcattggaagaagaggcataaagggtggcagaggctacaga
ggcaacgatggagatgatggagatgatggtttaaatggggtaaatggtgaacagggtgta
acaggagcagcgggaagcccaggagagcgaggagattcaggcagcccaggtccaagaggt
atcagcggaagccctggaaacccaggacagcgagggctgagaggagatccgggaaattca
ggaatagacaacaactcccgtggtcctaaaggtgacgccggtggcccaggcatacagggt
gaaccaggtccagatggtcttccaggccaaaatggtgaaaatggcagaccaggctctaat
ggcagaagaggctcagcggggcaactgggtcccagagggcctccaggaacaccaggacta
ccaggactccctgggcccacaggtccactgggtcctgtcggtccacctggtccagttggg
cagaaaggttacattggtctacctggacctcagggatctcctggctctccaggaaggcca
ggatctaaaggaagctctgggtccaggggacagaagggccagccaggtgatcctggagat
aagggagctctcggatctctaggccccagaggattgccgggaaaagatggtgcagatgga
tatggattcccaggaacaaaaggacagaagggagattctggtttcccaggttatcctgga
cttcagggcgaatggggtgttaaaggaacaaatggaggtggtggtcctaaaggcaacagg
ggaagagggggcaattctggtagggcaggaccacctggagatcctggcagcgagggcatg
cctggacacaggggttcaaaaggaccacggggaaccagacagatgtctgactgtcaacta
atctcctatgtccgagaaaattgtgtgtgctgcagagataacataaaatgccctgcctac
cctactgatcttgtgattggcttggacatgtctgaagatgtgactcctcaaggctttgaa
cgcatgcgttctgtagtcctcagactgctggacaaaattaacattgtagagagcagctgc
ccgaccggggctcgggtggctgtggtctcctacagctcctacaccaaatacctgatccgc
ttcactgactatcaccgcaagacgcagcttattgaagcggtgaataacatcggcctggag
cgcactgcaaatcgccgcaacataggtgctgccatgcgcttcgtgggcaggaacgtcctg
aagcgtgtgcgaaagggcgtcctgatgaggaaagtagcgatcttcctcaccgccggagaa
tctcaggattcgatgtccctcaccacagccattctagagtacaaagccctgaacattaaa
cttggggtcatctcactaaggaatgtacctaatattagaagagcttttgaggcagatgaa
acccggagtttcatcttgactgtgctgggtagattgcaagaacagaatgctactctcagt
aagatccagagttgtgttatttgctttgatccctgtagaccagctagagaatgtgagggc
accaacctggaatctgctcctcaggagttggacgtggacttggctgttatcgtggacggc
tcccgtagcatcctgtctgacgagtacgagggtgtaaaggaggtgctcggcagtgtgctc
gatcagatcgttgtgagcagtcaacccaacggggctgacagacacgccagagttgccgtc
taccagcagagctccacgtacagtgaagcccagtccagtgtgaaagtaatattcgacttc
caacagttctcagatcgcagtctaatgaagagaagcatctatcaagatctaaaacaaacc
ggaggatcttcccgactggcttttgcgatggattacgccataacacagggcatcctcgcg
gctcctaggggtcgcaagaacaagatggtgctggtcattattggggaggagacggcatct
caagacagagcgaagctggactttatctccaaggtggcgaagtgcgaaggtgttgttctc
ttcaccctgacggtgggtaatcacatcagcactgctcaggtggaggaacttgccagctac
cccttagaacagcacatcattcacctgggccacttgaaaaatggagaacatgaatacaca
cagcgcttcatgaggacgttcttccacattctgagcaaaaatgtgaacacctaccctcat
tcatcattccagagtcagtgtagaaatttccaaacagatccaggccagcgtttggactat
gaggctgcagagagacccatatatagtgttcctgtgccgtccgctgcttacccagacata
ctggtggaagaggaaatcgaggaagaagaccctacagaggaagagacttggaaccagcag
aactcaggagttaagtctctgactgactacacagacaatccatgtcacctgaacagtgac
cttggcaccatctgtggtgaatatgtgcaacgctggtactataatgaagcagtcggtgta
tgtttacccttctggtatggcggttgtgacgggaacagtaaccgttttaattcagaaaag
gaatgccttcagacctgtcgcaagcaaaatcctgaaataatcctgcagacaaaaggggaa
acggtattagtggatgatgcgtgcctcatgaaacaggatgtggggccctgcagtaattat
gttttaagatggcactatgacatccagcagaatgaatgcattcacttctggtttggagga
tgtgaaggaaacaaaaacaggttcgacacggaggaggaatgtaaagctctttgtgtaaaa
tacatttaa
DBGET
integrated database retrieval system
