Labeo rohita (rohu): 127178170
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Entry
127178170 CDS
T09007
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03015
mRNA surveillance pathway
lroh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127178170
09123 Folding, sorting and degradation
03018 RNA degradation
127178170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127178170
03041 Spliceosome [BR:
lroh03041
]
127178170
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127178170
mRNA cycle factors
Stress granule specific factors
127178170
Spliceosome [BR:
lroh03041
]
Complex C
Other components
Complex C specific factors
127178170
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RBD_DEAH11
RRM_Nup35
RRM_10
RRM_3
Motif
Other DBs
NCBI-GeneID:
127178170
NCBI-ProteinID:
XP_050986833
LinkDB
All DBs
Position
16:complement(858867..870276)
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AA seq
549 aa
AA seq
DB search
MCLMKMMLSSSLYVGDLEPDVTEAMLFERFRSVGSVQSIRVCRDRITCRSLGYAYVNFER
PADAERVLDTMNFDLMRGKPMRLMWSQRDPSLRKSGVGNVFIKNLEKSIDSEGLFDIFSS
FGSILSCKVACDGNGSKGFGFVHFETQEAAEKAIEKLNGMLINEQKVFVSHFKSQKEREV
EMQARNREFTNIYIKNFGKDVDDKMLTEIFSKFGPTLSVRVMTDEKGMSRGFGFVSFENH
SDAKRAVEELNRTELNGRLVLVCRAQKRRERQAELKRHFEQIRQERMMRYQGVNLYVKNL
SDSVDSERLLREFSPYGNITSAKVMTDGGRSRGFGFVCFSSPEEATRAITEMNCRIIDSK
PIYVALAQRKKERQALLNQQHVMRRQQHETHAEQVPYFSSYHVTQPQFGSQWDTQSVSPH
LNQSLCLAVSAAPQHIYTPEVYDHHEFTSKPQQQWTVQQVQECLSSSVSSSAEKQALGRS
LFPLVQDAVGPLASKITEMLLETDESELLQLLRCRQSLCMKVNEALAVLQSHQTMEEAQI
IRSSRYSYQ
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgtgtttgatgaagatgatgttgagcagctcgctgtatgtgggcgatctggagccggac
gtgactgaagccatgctgttcgagcgcttcaggtcggtcggttcggttcagtcgatccga
gtctgtcgggaccgaatcacttgccgctcgctcggatacgcgtacgtcaacttcgagcga
cccgcagacgccgagcgagtgttggacaccatgaactttgacctgatgcggggtaaaccc
atgcgtctgatgtggtcacagcgagacccttcactgaggaagagcggcgtgggaaacgtc
ttcatcaagaacctggagaaatccatcgacagcgagggcctgttcgacatcttctcatcc
ttcggaagcatcctgtcctgcaaagttgcctgtgatggaaatggatcgaaaggctttggg
ttcgtgcactttgagacgcaagaagctgcagaaaaagccatcgagaaattaaacggcatg
ttgatcaatgagcagaaagtgttcgtctcacacttcaagtctcaaaaggagcgtgaggtc
gaaatgcaggcgagaaacagagagttcacgaacatttacatcaagaacttcgggaaggat
gtggatgacaagatgctgacggagattttcagtaaattcgggccgaccctgagcgttcgg
gtcatgacggatgagaagggaatgtcgagaggatttggtttcgtcagctttgagaatcac
agcgatgccaaacgggcggtggaggagctgaaccggacggagctgaacggcaggctggtg
ctcgtgtgccgagctcagaagagacgagagcggcaggcggagctgaagcggcacttcgag
cagatcaggcaggagcgcatgatgagatatcagggcgtgaatctgtacgtgaagaatctg
agtgacagcgttgacagcgaacggctgctcagagaattctctccgtacggaaacatcacc
agcgctaaggtgatgacagacggcggccgcagccgaggcttcggattcgtttgtttctcg
tctcccgaagaggccaccagagccatcactgagatgaactgccgcatcatcgactccaag
cccatatacgtggctctggctcagaggaagaaggagcgtcaggctctgctcaaccagcag
cacgtgatgagacgccagcagcacgaaacacacgccgagcaggttccgtatttctcctca
tatcacgtcactcagcctcagttcggctctcaatgggacacacagagcgtcagtcctcac
ttgaatcagtctctctgtttggccgtgagcgcagcaccgcagcacatctacactcctgaa
gtttacgatcatcacgagttcacaagcaaaccgcagcagcagtggactgttcaacaggtc
caggagtgtctgagctcatctgtgtccagctcagcagaaaagcaggcgcttggtcgcagt
ctcttcccgctggtgcaggacgcggtggggccgctggcgagtaaaatcaccgagatgctg
ctggagacggacgagtcggagctgctgcagctgctgcgctgccgtcagtctctgtgcatg
aaggtgaacgaagcgcttgctgttcttcagtctcatcagacgatggaagaggctcagatc
atcagatcatccagatattcatatcaatga
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