Labeo rohita (rohu): 127178454
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Entry
127178454 CDS
T09007
Name
(RefSeq) endoribonuclease ZC3H12A
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127178454
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
127178454
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
zf-CCCH
RuvA_C
Motif
Other DBs
NCBI-GeneID:
127178454
NCBI-ProteinID:
XP_050987296
LinkDB
All DBs
Position
16:35462970..35474585
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AA seq
584 aa
AA seq
DB search
MQSRCYHQPAGLGQDGPDLRGLQMKVDFFRKLGYSSQEVKAALRKLGLGTDTNAVLGELV
RSGAKAVPSSSSDSDDGGFSLPHRGGSSPRGQASMLEDATEPESDLKPIVIDGSNVAMSH
GNKEVFSCRGIELAVNYFLDRGHRNITVFVPSWRKEQPRPDVPISDQHILEELERKKILV
FTPSRRVGGKRVVCYDDRFIVKLAHDLDGIIVSNDTYRDLQSERPEWKRCIEERLLMYSF
VNDKFMPPDDPLGRHGPNLDNFLRKKAMLLDHKRQLCPYGKKCTYGIKCKFYHPERTNQS
HRSLADELRENARLSGSKEDSRVNGPLRGMYPRNDPGFGSCSPSLEQELEQKLRLDPKSS
DGRDVMLQYWDDILSTKKPLNTATVGQHSASVDITSMQAPYPTNHSSIFSSDSGLGSYES
QFSEPSQSTEELHRMRSGHPPMSGNPGLPEGGQRYYDNMNLFSNYQPNYGAYSSLPLPNP
VQRYSLPAYNAWSYPFFLPQATSLPEPLPCPSSHRSPNGYGSQQHSAMPQSSAFQEEREE
VRKKLHAIFNPHHVNKVMEMFPQLKDAQQLAAEVLKLKSRGEFF
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcgaggtgttatcatcaacccgctggcctgggccaagatggacctgacctccgt
ggcctgcagatgaaggtggacttctttcgtaaactgggttactcttcacaagaggtgaag
gctgccctaaggaagctcggtttggggacggacaccaacgcggtgctgggggagctggtg
cgttcaggagcgaaggctgtgccttcctctagctctgacagcgatgatggtgggttcagt
ttgccccatcgaggaggaagctcacctaggggacaggcctcaatgctggaggacgcaact
gaacccgaaagtgacctgaagcctattgtcatcgatggcagcaatgtagcaatgagtcat
ggaaacaaggaagtgttttcctgccgcgggattgagctggcagttaactacttccttgac
cgaggacacagaaatatcactgtgtttgtgccttcctggagaaaagagcagcccaggcct
gatgtacctatttcagatcagcatattttggaagagctggaaaggaagaagattcttgtg
ttcacaccttcaagaagggttggaggaaagcgtgtggtctgctacgacgatcgctttatt
gtcaaattagctcatgacctggacggcattatagtgtccaacgacacatatcgtgacctg
caaagtgaacgtccggagtggaagcgttgcattgaggagagattgcttatgtactccttt
gttaatgataagttcatgccacccgatgaccctctcggccgtcatggacccaatttagat
aattttcttaggaaaaaagcaatgttacttgaccacaagcgacaactctgtccatatgga
aaaaagtgcacatatggtatcaagtgcaagttctaccaccccgagcgcacaaatcagtca
caccgttctctagccgatgagcttcgagagaatgccagactgtctggttcaaaagaggac
agcagagtaaatgggcctctaagaggaatgtacccaagaaatgaccctggttttgggtcc
tgctccccctccttggagcaagaactagaacagaaactcagattggatcccaagagctct
gatggtagagatgttatgcttcagtactgggatgacattttgtccactaaaaagccctta
aatacagccacagtgggacaacacagtgcttctgtggacataaccagcatgcaagcacct
tacccaacaaaccattcgtccattttcagttccgactcaggacttggatcctacgaaagc
cagttctcagagccatcgcagagcaccgaagagttgcataggatgagatccggtcatcca
ccaatgtctggtaaccctggcctacctgaaggtggccagcggtactatgacaacatgaat
cttttctccaactatcaacctaactatggtgcctacagctccctacctctgcccaaccct
gtccagcgttatagtcttcctgcttacaatgcctggtcttaccctttcttcttaccacag
gcgaccagtttaccagaacctttaccctgtcctagctcgcacaggtctcccaatggctat
ggaagccagcagcactcagctatgccacagtccagtgctttccaggaagaaagagaggag
gtcaggaagaagcttcatgcgatctttaacccgcatcatgtaaacaaagttatggaaatg
tttccgcaactgaaagatgcacagcagcttgctgcagaggttctcaaactcaaatctagg
ggagagttcttctga
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