Labeo rohita (rohu): 127178511
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Entry
127178511 CDS
T09007
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
127178511 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lroh03036
]
127178511 (chd8)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
127178511 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
Chromo_MIT1
HTH_Hrp3
MUN
Motif
Other DBs
NCBI-GeneID:
127178511
NCBI-ProteinID:
XP_050987387
LinkDB
All DBs
Position
2:complement(27304341..27328155)
Genome browser
AA seq
2599 aa
AA seq
DB search
MADPIMDLFDDTPLFNLDSLPEDAFSQGSSDPVEEALKLALGQVDPPTDPMSDAGVPVLS
DVVTDPALIPTPVAAPISVPLQTLQTQQPTQMAHEVSVAPASISVQPSLSVASNSSGAAT
VLLSSPLGVPVSAAQVTTQQLQTQQIAVTQQGAGQGAPKIVILKGPQGQTQVLQGVTGAT
GSPGKVTLARVLTGTPLRPGMAVVSGGTVLNATSPGQGQVKVGTGVQRLVQTANGPMKQV
LLTSVPQTQSQVQTQQVQVQIPAQTQLQSQSQPAQVQAQVQVQPQAQVALQAQVQTQDQA
PATTSPGTTAAAVRPQSVTLSAVPQQGEAKRITLVLQQPSQGGAAQAGTVTVGGTAAAGA
GQQGQQPRLVLGSLPGKLVLQGGQLAALAQAKAGQTGAQPKVLTIQLQVQQQPNQQGAKF
QLVSGAANAGGGPQVVQISQGQGGQRLAVPLKLLLQPQSTTASSAGGAVSVVKVINTSAA
GSASSTTTTAASSGVRLAKVQEPVRRVETLCKQEKANRIVAEAIARAKARGERNIPRVLN
QDELPAGQTSADLESTPGAGGAKKKGGGGGGGGGGGGGGGGSSSGGSKKKSPSAGGGKVV
VGGDKKSKAKTPGVVSGGGGSKSKSKTKLNTITPVGGKKRKRNASSDHSDIDLSPPVSPR
TLEEEMSQKRRSNRQVKRKKYTEDLDIKITDDEDEMDADVDVTTTPVSSAGHLQSMGAEL
QHELDGDGLPSMQFFVENPSEEDAAIVDKILSMRVTKKEVSPGQYTNVEEFFVKYKNYSY
MHCEWASLEQLERDKRIHQKLKRFKTKQAQMRNLFQEDEEPFNPDYVEVDRILDESHSVD
KDNGEPVVYYLVKWCSLPYEDATWELKEDVDEGKVEEFRKIESRPARLKRTPRPAASAWK
KLDESREYKNGNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIALLSEVFAAG
VQGPFLIIAPLSTITNWEREFSTWTDMNAIVYHGSLASRQMIQQYEMYCKDDKGHLIPGA
YKFDALITTFEMILSDCPELREISWRCVVIDEAHRLKNRNCKLLDSLKMLDLEHKVLLTG
TPLQNTVEELFSLLHFLEPAQFPSEIEFLREFGDLKTEEQVQKLQSILKPMMLRRLKEDV
EKNLAPKQETIIEVELTDVQKKYYRAILERNFSFLSMGATQNSNVPNLLNTMMELRKCCN
HPYLITGAEEKIVAELREVYDPLAPDFHLQALVRSAGKLVLLDKLLPRLKAGGHKVLIFS
QMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI
NLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLG
LDRAVLQSMSGNKDSSVNGIQQFSKKEIEDLLRKGAYAAIMDENDEGSRFCEEDIDQILQ
RRATTITIESEGKGSTFSKASFVASENRTDIALDDPEFWQKWAKKADIDMDSLNRKNTLV
IDTPRVRKQTRQYSSLRGEGGDLSDLDSDDDYPPHNSRQSRASRRSDRHSGGGYGRTDCF
RVEKHLLVYGWGRWRDILSHARCKRRLSERDVETICRVILVFCLIHYRGDENIKSFIWEL
ITPPENGREPQALLNHSGLSIPVPRGRKGKRVKAQSSFDVQKVEWIRKYNPDSLLLDDSY
RKHLKHQCNKVLLRVRMLYYLKQEVIGEHADSVLRGADARDIDIWLPEMEQQDVPSGWWD
AEADRCLLIGVYKHGYEMYTTMRADPCLCFVERCGRPNEQDINAEQQAADPELGEGGDYD
KYSEDPEFKPATRHTKDVYEEADSVNADGEICVEDRSAPVQVEGPSSGSSDLCYWPTSSS
LTARLRRLITAYQRSYRREQLKIEAAEKGDRRRRRCEQATKLKEIARQERQQRWTRREEC
DFYRVVSTFGVERIKKEGDAPEGDEHHMDWNRFRSFARLDKKTDESLTRYFKCFMSMCRK
VCHFRPARGEGEIHWKLVSSRDAKYIETQDLSQSLAPITEERASRTLYRVSLLCRLRERV
LPHPSLEERLSLAPPSSDLPNWWSIPQHDHELLLAAARHGVSRTELSIFSDPQYSFSQAR
LDYLQNQQAQAASQIHVLSQSQDPTGIKEESLDDESRLLGVEALCPSDSPAMLLSHSEVK
VGVQAGWGWKKNKNNGPSERKAGRERGEGPSDSDSDSDSGSSSSSRHSGSSDDSGDSDAE
REQVATLKMCDGDEENSILSLTPSQEGAPPESLTDPLRVDWPKDRVLINRIDNLCSLVVM
GHWPSGRRYVSDIQLNATSEEHDLSDDVGYPRVARKSNSALSAEALEGQESEFTVKLLKE
EGLKLTFSKQALMPNGEGSARKKRKDHELVDAEGVLHAPRRRDLPNWLKENPDYEVEGDM
LELLVNRTKRKRRRKRVEKGAALTGSERVKVIDIRTGKKFGGIYGPLLQDLREHLEENPD
HVVAPEWSETVRNSGFLPESLFHRLLSPHASIPKKNRHYLSTPSIQTDDPLLGGGEGETL
VSDGAYMMDDEDLEDGGHLTSSHHFLTPAYDVKMEPSALDMDGGDSLSQGGYDSSDREAI
LDDVIMAPKNSDSSSSSED
NT seq
7800 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcccattatggacctctttgatgacacaccactgttcaatttggattcctta
ccggaggatgcgttctcccagggctcctcagacccggtcgaggaggcgctgaagttggca
ctgggccaagtggacccacctacggaccctatgtcggatgctggtgtccccgtgctcagt
gatgttgtcacagatccagctctaatcccaacacccgtcgcagctcctatctccgtccca
ctgcagacccttcaaacacagcagcccacccagatggcccatgaggtttctgtggccccg
gcttcaatttccgttcagccctctctctcggtggccagtaatagcagtggggcggcaacg
gtcctgctgagctcccctcttggagtacctgtgtcagcggctcaagtcaccacccagcaa
ctgcagactcagcaaatcgctgttacgcaacagggggcagggcagggggccccaaaaatt
gtaattctcaaaggccctcagggtcagactcaagtgctacagggtgttacaggggccaca
ggctctccagggaaagtcaccctcgctagagttctgacagggaccccgcttagaccaggg
atggcggttgtttccggggggacagtattaaacgcgacatctcctgggcagggacaggtg
aaagtgggcactggagtccaaaggctggttcagactgcaaatggcccgatgaagcaggtg
ttactgacctcagtgccccagactcaatcgcaggttcagacgcagcaggttcaggtgcag
atacctgcgcagacccagctgcagtcacagtcgcagccagcacaggtacaggcgcaggtc
caggtgcagcctcaggcacaggtggcattacaagcccaagtgcaaacacaggaccaagcg
ccggctactacatcccctggaacaacagcagcggccgtccgacctcaaagtgtcacactt
tcagcagtgccacagcagggggaagcgaagaggatcactttggttctacagcagccctcg
caaggtggagcagcccaggccgggacagtgacagtagggggaactgcagctgcaggggca
ggtcagcagggccagcagcccaggctggtgttgggctctctgccagggaagttggtcctg
cagggtggccagctggcagctctcgcccaagccaaggcaggtcaaacgggtgcgcagccg
aaagtgctcaccattcagctgcaagttcagcagcagcccaaccaacagggagccaagttt
caattggtttctggggcagctaatgctggtggcggccctcaggtggtgcagatttctcaa
ggccaaggaggacaaagactagcagtgcctcttaaactactgctgcagccacagtcaacc
actgcttccagtgctggtggggccgtttctgtggttaaagttatcaatacctcggctgcc
gggtctgcgtccagcaccaccaccacagccgcgtcttccggtgtgcgtttggcgaaggtc
caggagcccgtgcgaagagtggagaccctgtgcaaacaagagaaagcaaatcgcattgtt
gctgaggccatcgcacgggccaaagccaggggcgaacggaacatcccccgtgtgctcaac
caggatgaactgcctgccggacagacctctgcagacctggagagtaccccaggggctgga
ggagccaaaaagaaaggaggaggaggaggaggaggaggtggtggtggtggtggtggtggt
ggtagtagtagtggagggagcaagaagaaaagcccaagtgcgggaggagggaaagtggtg
gtgggaggagacaagaaatccaaggcgaagactccaggagtggtttctggaggcggaggc
agtaaaagtaaatccaagactaagctgaacaccatcactcctgtgggtggtaagaaaagg
aaaagaaatgcatcctctgaccattcagatatagatctaagcccacctgtttcaccccgc
acactggaggaggaaatgtcacagaagcggcgttctaaccgtcaagtgaagcggaagaag
tacacagaggatttggacattaaaatcacagatgacgaagatgaaatggatgcggatgtt
gacgtaaccacaacccctgtgtctagtgcagggcatctccagtctatgggcgcagaactc
cagcatgaactggatggggatggtcttccaagcatgcagttttttgtggagaacccaagt
gaggaggacgctgctattgtggataaaatattgtctatgcgggtgaccaaaaaggaggtg
tctccagggcagtatactaatgtggaggaattttttgtcaaatataaaaactactcgtac
atgcactgtgaatgggccagtcttgagcaacttgaaagagacaagaggatccatcagaag
ctgaaaagattcaagacaaaacaggcacagatgaggaacctattccaagaggatgaggaa
cctttcaatccagactatgtggaggttgatcgtattttggatgagtcacacagtgttgat
aaagacaatggggagccggttgtttactacttagtgaagtggtgctctctgccctatgaa
gatgctacctgggagctgaaggaggatgttgatgaaggaaaagtggaagaattccggaag
attgaaagccgcccggcccgactcaaaagaactcctcgacctgctgcaagtgcctggaag
aagcttgatgagtccagagagtataagaatgggaaccagctccgagagtaccagctggag
ggagtcaactggctgctcttcaactggtacaacaggcaaaactgcatcctggcagatgaa
atgggtctggggaagaccattcagtccatagccttgctgtcagaggtgtttgctgcaggg
gttcaggggccgttcctcatcattgcccctttatccactatcacaaactgggagagagag
ttttccacctggacagatatgaatgctattgtttaccacggcagtctggccagtagacag
atgatccagcagtatgaaatgtactgcaaagatgataagggacacttgataccaggggcc
tataagtttgacgctctgatcacaacctttgagatgattctctcagattgcccagagctg
agggagatttcttggcgctgtgtagttattgatgaagctcaccgtttgaagaacagaaac
tgcaaactcctcgacagcctcaagatgcttgaccttgagcataaagtgttgttgacaggc
actccacttcaaaacacagtagaggagctgttcagtctgctgcactttctggagccggcc
cagtttccctcggagatagagttcttgcgcgagtttggagatcttaaaacagaggagcag
gtccagaaactgcagtcaattctaaagccaatgatgctgcgtagactgaaagaagatgta
gaaaagaacctcgccccaaaacaggagaccattattgaggtggagttgactgatgtacag
aagaagtattaccgtgctattctagaacgtaacttcagcttccttagcatgggagccaca
caaaacagcaatgtacccaatctcctcaacacaatgatggaacttcgaaagtgctgcaac
cacccttacctcattacaggtgctgaggagaagatagtggctgagctgagggaagtgtat
gatcctctggctccagactttcatctccaggctctggtgcgctctgcagggaaactggtc
ttgctggataagctgcttcctcgccttaaggctggcgggcacaaggtgctcatcttctca
cagatggtgcggtgcctcgacatccttgaggactacctcatacacaagagatacctgtat
gagcgcattgatgggcgggtcagaggaaacctgcgacaagcggccattgatcgctttagt
aaacctgattcagaccggtttgtcttcctgctttgtacccgggctggaggtttgggcatt
aatttgactgctgctgacacctgtgtcattttcgactctgactggaacccacagaatgat
cttcaagctcaggcacgttgccatcgtattggtcagtctaaagcggtgaaggtgtatcgt
ctcattaccagaaactcatatgaaagagagatgttggacaaagcgagtcttaaactggga
cttgatcgagccgttctgcaaagcatgagtggaaataaagacagcagtgttaatgggatc
cagcagttctccaagaaggagattgaggatttacttcgtaaaggtgcttatgcagccatt
atggacgagaacgacgagggcagccgtttctgtgaggaggacatcgatcagatacttcag
agaagagcaacaaccatcactatagagagtgaaggcaagggatccaccttctccaaagcc
agctttgtggcttctgagaatcgcaccgatattgctctggatgatcctgagttctggcaa
aagtgggccaagaaagctgacatagacatggactctctcaacaggaagaatactcttgtg
attgacacgccaagagtgagaaagcaaacgcgtcagtattccagtctgcgtggagaaggt
ggagatctgtctgacttggatagtgatgatgactacccaccccataattcccgtcaatct
cgggcttctcgacgctcagatcggcattctggtggtggttatgggcgcacagactgcttc
agagtggaaaagcacctacttgtttatgggtggggccgttggagggatatcctgtctcat
gctcgctgtaagaggcgtctcagtgaacgtgatgtggagaccatctgccgcgtcatcctg
gttttctgtctgatacattaccgtggagatgagaatatcaaaagcttcatttgggagcta
atcacccctccagagaatggacgagaaccacaggctctgcttaatcactctggtttgtct
atccctgttcctcgtggcaggaagggaaaacgagtcaaggctcagagctcttttgatgtg
cagaaagttgagtggattcgaaagtataatcctgacagtcttctgcttgacgacagttac
cgaaaacacctcaaacaccagtgcaacaaagtgttgctgagagtacgtatgctgtattac
ctgaagcaggaggtcattggagaacatgctgattctgtattgagaggagctgatgcaagg
gatattgatatctggttgcctgaaatggagcagcaggatgttccgtctggctggtgggac
gcagaagcagaccgatgcttgcttatcggtgtctataaacatggatatgagatgtacacc
actatgcgtgctgacccctgcttatgttttgttgagcgatgtgggcgtcctaatgagcag
gacataaacgcggagcagcaagcagcagacccagagcttggggagggaggggactatgac
aagtactcagaagatccagaattcaaacctgcgacaagacacaccaaggatgtatatgag
gaggctgattcggtgaatgcagatggtgagatttgtgtggaggatcgctctgcccctgtg
caggttgaagggccatcttcaggatcatcagatttgtgttactggccaacaagttcgtcg
ctcacagctagactacgccgtcttatcaccgcctaccaacgcagttacagacgagagcag
ctgaagatagaagcagcggagaagggtgaccgtagacgtagacgctgtgaacaagccaca
aaacttaaagagatagcccgacaagaacgacaacaaaggtggactcgtagggaggagtgt
gacttttacagggtggtatcaacctttggggttgaaagaataaagaaagaaggcgatgct
ccagaaggggatgagcatcatatggactggaatcgcttccgttcttttgctcgacttgat
aagaaaaccgatgagagcttgacacgttacttcaagtgcttcatgtccatgtgtcggaaa
gtgtgtcactttcggccagcacgtggagaaggagaaattcactggaaactggtttcgagt
agggatgcaaaatatattgaaactcaagatttgtcccagtctctggcccctatcacagaa
gaacgagcctcacgcacactctacagggtcagcttgctctgtcggctacgtgagcgtgtt
cttccccacccctcattggaggagcgcctcagtctggcaccaccttcctctgacctcccg
aactggtggagcatcccacagcatgaccacgagctgctcttagctgccgccagacatggt
gtcagccgcactgaactctcaatcttctctgacccgcagtactcattcagtcaggcccgc
ctcgactacctccagaaccagcaagcccaagctgcttcgcagattcacgtgttaagtcag
tcacaggatccgactggtatcaaagaggagagcctagatgatgagtctcggctgctgggg
gtggaggcactctgtccgtcagactctccagccatgctcctctcccattctgaggtgaaa
gttggagtccaagctggatggggctggaagaagaataaaaataatgggccgagtgagaga
aaagcaggaagagagagaggcgaagggccttcggactccgattctgattcagactctggc
tcgtcttcctcctcccgtcattctggcagctcagacgatagcggagacagtgatgcagag
agagaacaagtagcaactcttaagatgtgcgatggcgatgaagaaaacagcatcctctca
ctcacaccatctcaagaaggtgccccacccgaatccctcactgaccctctgagagttgat
tggcccaaagaccgtgtgttgataaaccgaatagacaacctctgctcgctggttgtaatg
gggcactggccgtcaggtcgacgctacgtttctgacatacagctcaatgctacatctgaa
gagcatgacctcagtgacgatgtaggttacccccgagtggcacgcaaaagcaacagtgcc
ctgtctgcagaagctcttgaaggccaagaatcagaattcacagtaaaactcctaaaggag
gagggtctgaagttaacgttttctaagcaggctctaatgccaaatggtgaaggaagtgca
cgcaaaaagagaaaggaccacgagctggtagatgccgaaggggttctccatgctccccgc
agaagggaccttcctaactggctcaaagaaaacccagattatgaagtggaaggagacatg
ttagaattactggtgaaccggaccaaaaggaagaggaggaggaagagggtagagaaagga
gcagcacttaccggcagtgagagagtgaaggtcatagacataaggacaggcaagaagttt
ggtggaatatacgggcctttactacaggacctgagagagcacctggaggagaatcctgac
cacgttgtagcaccagaatggtctgagactgttcgcaactcgggcttcttgcctgagagt
ttattccacagactgttgagtccccatgcttcaatccccaaaaagaatcgacattacctc
tccaccccttcgatccagaccgacgaccctctcctgggaggcggcgaaggcgagacgtta
gtttccgacggcgcatacatgatggacgacgaggacctggaggacggcggtcacctcaca
tcatctcaccacttcctaactccagcctacgatgtgaagatggagccgagcgctcttgat
atggacggaggcgacagtttgtcacaaggtggctatgatagctcagacagagaggccatt
ttggatgacgtcatcatggcaccgaagaattcagactcttcctcaagctccgaggattga
DBGET
integrated database retrieval system
