Labeo rohita (rohu): 127178538
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Entry
127178538 CDS
T09007
Symbol
nod1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04621
NOD-like receptor signaling pathway
lroh05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
127178538 (nod1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
127178538 (nod1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lroh04054
]
127178538 (nod1)
Pattern recognition receptors [BR:
lroh04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
127178538 (nod1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
CARD
LRR_6
NOD2_WH
LRR_4
AAA_16
AAA_22
NTPase_1
NPHP3_N
SLFN-g3_helicase
AAA_30
Motif
Other DBs
NCBI-GeneID:
127178538
NCBI-ProteinID:
XP_050987432
LinkDB
All DBs
Position
16:complement(1464889..1478783)
Genome browser
AA seq
937 aa
AA seq
DB search
MGSYKSDRSHLKLLTLHRELLVEQVKNTQCVLDNLRMNGFICTEDIEIIQRSSTKTDQVR
KILELVQSKGEECSAYFVHVLHEAYDAYIDLRPWFEEIKYTPLDTISVIPVVNTDPISKY
CEKLRNELGRDTRFITSYSKSEETPLEDLYTDTQMELLNDRGESLGYLESLDELLRDQGV
FNSQAETIFITGDAGIGKSIVLQKLQNLWSRRELKTQAKFFFKFRCRMFSAFKETDEISL
KDLIFKHNCYPDGDLDNEVFTYILRFPETVLFTFDGYDEIQSDFDLDNVPETVSPEEKTR
PLLLLMNLLCGKLLKGSRKILTARSGTEIQNRVIQKKVYMKGFSPEHLKRYTTLHFPEKE
HRTMVTDQLDANPHLCGLCSIPLFSWIILKSFKHLHSVYDNFELPDSCITLTNVFLLLSE
VFLGHSTARPGLLKRSTRCPAETFKAGERKLSAFARLALHGLERGGLVFSIEEVLSCGLE
DEDLQFGFLRPASHYDGFGGSATFEFLHETLQAFLAAFSLVLDSKVTPESILRFFSKCEY
KRSSHFSCLPCLGKSSPRDKDPFQTSFQFTNLFLCGLLSKPNAALLEHLVPPALLKQKHK
MLKSYLSNSVKTHLKGLPRYPSTDSGGDKVHAMPNFLWMLRCIFETNSEDVAKMTANGIS
ADYIKIAYCNIYSADCSALNFVLHHRRKHLGVDMDNNNINDYGVKQLRPSFSKMTVVRFC
VNQLTDSSIEVLAEELTRHKIIKVLGLYKNSITDVGAKLVAKIIEECPHLKIVKLGCNNI
TGVGGKYLASAICKSKSIFDIGMWGNSIGDEGADAFAEALKNHPSLTNLSLSANGITSHG
GRSLAKALKENTSLHIFWLIQNKISDDAASDFADTFRSNSALTHLMLIENEFTISGAKQM
SEGLTNNTTLKEVNVKGNRVSEEEERFYEGDKRLRFH
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgggctcttacaagagtgacaggtctcacctgaagctcctgactttacaccgcgagctg
ctggtggagcaggtgaagaacacgcagtgtgttctggacaatcttcggatgaacggattc
atctgcactgaagacatcgagatcatacagcgcagcagcaccaaaactgaccaggtacgc
aaaatcttggagctggttcagagtaaaggagaggagtgctcagcgtatttcgtgcacgtt
cttcatgaagcatacgacgcttacattgatctgcggccttggttcgaagaaattaagtac
acaccattagacactattagtgtcataccagtggttaacacagacccgattagcaagtac
tgcgagaagctcagaaatgagctgggaagagacactcggttcatcacgtcatactcgaaa
agcgaggagacgccgctggaggatctttacacggacactcagatggagctcctgaacgac
agaggtgagagtttgggatacttagagagtctggacgagcttctaagagaccaaggagtc
ttcaattcgcaggccgagaccatctttatcaccggtgatgctggcataggcaaatcaatc
gttctccagaagctgcagaacctgtggtccagaagggagctgaagactcaagcgaagttc
ttcttcaagttcagatgcaggatgttcagcgccttcaaggagacggatgaaatctcgctg
aaggatttgatttttaaacataactgctatccagacggagacctcgataacgaggtcttc
acctacatcttacgcttcccggagactgtgcttttcacctttgacggatatgatgaaatc
cagtcggattttgatttggacaatgttccggaaacggtgtcccctgaagaaaagacccgt
ccgcttttgcttctcatgaacttgctttgcggaaaattactcaaaggttcccggaagatt
ttgacagcacgaagtggcactgaaatccaaaacagagtgattcagaagaaagtctatatg
aagggtttttcccctgagcacctgaagagatacacaactttgcatttcccagagaaggag
cataggacgatggtgacagatcagctggacgccaatcctcacctttgtggtctttgctcc
atcccgttgttcagctggatcatcctcaagagctttaagcatctccattcggtatatgac
aacttcgagttgccggattcttgcatcaccctcacaaatgtcttcttgctcctctccgag
gtcttcctcggacactcgacggcacgtcctggacttttaaaacggagtacgaggtgtcct
gcggaaacctttaaagctggtgagcgcaagctctcggcttttgctcgcctggccttgcat
ggtctcgaacggggtggacttgttttcagcattgaggaagtgctatcctgcggattggaa
gacgaagacctccagtttgggtttctgaggcctgcttctcattacgatggatttggagga
tcggcaaccttcgagttccttcacgagaccctccaagccttcttggcggcgttctcattg
gtgcttgactccaaagtcactcctgaatctattttgaggttcttctccaaatgcgaatac
aagaggtcgtcgcatttctcctgcttaccttgtctgggaaagtccagtcctagagataaa
gaccctttccaaaccagcttccagttcaccaatttattcttatgtggcctcttgtccaaa
cccaatgcggcactcctggagcatctcgttcctccggcgttgttgaagcagaaacacaag
atgctcaagtcttatctctccaacagcgtgaagacgcatctcaaaggccttcctcgatat
ccatccacagacagtggtggtgacaaggtgcatgcaatgccaaatttcttgtggatgctg
aggtgcatatttgagacaaacagtgaggacgttgccaagatgacggctaacggcatatcg
gcggattacattaagatcgcctactgcaatatttactcggccgactgcagcgcgttgaac
tttgtcctccatcatcgtaggaagcacctgggagtcgacatggacaataacaacatcaat
gattatggagtgaagcaactaagaccgtctttcagcaaaatgacagtagtaagattttgt
gtgaatcagctgacggacagcagtattgaggttctggcagaggaactcaccagacataaa
atcattaaagtcttgggtctttacaaaaactccatcacagatgttggagccaaactagtg
gcaaagatcattgaggaatgtccacacttgaaaatcgtcaagcttggctgcaacaacatc
actggtgttggtgggaaataccttgccagtgcaatttgcaagagcaaatccatctttgac
ataggaatgtggggaaacagcatcggtgacgagggcgcagatgcgtttgcagaggctctg
aagaatcaccccagcctgaccaacctcagtctctctgccaatggcattacctctcacggt
ggaagaagtctggcaaaagcattgaaggaaaacacaagtcttcatatcttctggttgata
cagaataaaatctctgacgatgcagcgtcagactttgcggacaccttcaggtccaactct
gctctgacgcatctgatgctgatagaaaacgagttcaccattagtggagccaaacagatg
tctgaaggcctgacaaacaacactacactgaaggaagtgaatgttaaaggaaaccgggtt
tctgaagaagaagagcgattctatgagggcgacaagaggcttcgcttccactga
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